genome.fa.s19.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  191  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57702884--57703098	105	2.0	107	85	3	292	29	13	11	45	1.79
57702895--57703134	18	13.6	18	74	11	167	30	12	10	45	1.77
57707717--57707910	98	2.0	98	95	0	352	35	24	12	27	1.91
57708981--57709074	19	4.8	19	89	5	152	34	15	11	38	1.84
57708974--57709073	40	2.6	40	90	6	154	35	15	11	39	1.82
57710573--57710619	21	2.3	21	81	3	60	51	2	0	46	1.13
57711144--57711188	23	2.0	23	91	8	74	48	4	11	35	1.59
57716159--57716209	24	2.1	24	85	0	66	62	0	1	35	1.06
57716240--57716287	25	2.0	24	83	4	60	72	6	4	16	1.20
57716524--57716560	19	1.9	19	94	0	65	78	0	0	21	0.75
57716525--57716570	24	1.9	24	82	8	58	78	2	2	17	0.96
57716622--57716664	19	2.3	19	84	8	52	32	4	2	60	1.30
57719502--57719545	14	2.9	16	75	25	51	43	0	0	56	0.99
57719953--57720011	30	2.0	30	86	3	84	40	15	11	32	1.83
57720030--57720081	27	2.0	27	85	7	72	25	0	3	71	1.03
57720653--57720759	56	1.9	55	88	1	160	40	12	9	38	1.75
57724209--57724238	10	3.0	10	95	0	51	36	0	13	50	1.42
57725523--57725580	10	5.9	10	76	17	59	56	1	1	39	1.19
57735374--57735439	20	3.3	20	71	10	55	66	6	4	22	1.32
57736268--57736300	16	2.1	16	94	0	57	33	0	6	60	1.21
57741049--57741324	139	2.0	138	94	0	489	27	18	20	33	1.96
57743175--57743296	63	1.9	63	80	3	138	22	29	24	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57748588--57748628	21	2.0	21	81	18	50	21	26	19	31	1.97
57773052--57773084	16	2.0	17	88	5	50	57	3	0	39	1.14
57773155--57773241	33	2.7	31	81	13	95	59	6	4	28	1.43
57774531--57774585	27	2.0	27	100	0	110	34	18	10	36	1.86
57777029--57777187	81	2.0	82	96	1	293	30	21	17	30	1.96
57788754--57788778	6	4.2	6	100	0	50	52	0	16	32	1.44
57793047--57793077	2	15.5	2	100	0	62	51	0	48	0	1.00
57796894--57797334	147	3.0	147	83	1	544	33	14	26	25	1.94
57798909--57798955	15	3.1	15	84	0	67	44	2	8	44	1.46
57799369--57799454	30	2.9	30	83	0	127	41	18	3	36	1.68
57801161--57801194	14	2.4	14	90	5	50	17	2	0	79	0.86
57801155--57801194	15	2.7	15	80	11	55	22	5	0	72	1.04
57802153--57802238	30	2.9	30	92	0	154	43	20	3	32	1.69
57805653--57805717	16	4.1	16	75	9	71	30	24	4	40	1.75
57806188--57806218	16	1.9	16	93	0	53	41	0	0	58	0.98
57808950--57808991	20	2.1	20	95	0	75	45	4	16	33	1.69
57810926--57811004	40	2.0	40	100	0	158	54	10	2	32	1.47
57813809--57813843	17	2.1	17	94	0	61	42	2	34	20	1.66
57813815--57813848	17	2.1	17	88	5	52	41	8	29	20	1.82
57816025--57816072	25	1.9	25	100	0	96	35	8	8	47	1.64
57816524--57816570	23	2.0	25	91	8	80	57	2	10	29	1.44
57818946--57819018	20	3.3	21	81	11	76	71	0	1	27	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57818944--57819016	23	3.3	23	81	9	80	71	0	1	27	0.95
57818959--57819016	10	5.5	10	75	24	57	72	0	1	25	0.94
57818945--57818988	13	3.5	13	84	6	63	75	0	0	25	0.81
57818944--57819018	12	6.7	11	75	15	66	70	0	1	28	0.95
57820066--57820131	31	2.2	31	80	2	80	45	4	12	37	1.62
57822575--57823174	302	2.0	299	93	2	1033	29	15	20	34	1.94
57826007--57826039	15	2.3	15	89	5	50	54	0	18	27	1.44
57827455--57827526	22	3.2	22	66	11	65	43	4	8	44	1.53
57830916--57830956	20	2.0	20	100	0	82	36	9	9	43	1.71
57834152--57834212	28	2.2	28	85	5	81	45	0	3	50	1.17
57834387--57834428	15	2.7	16	82	14	52	45	0	2	52	1.13
57834378--57834419	15	2.9	15	82	10	52	47	0	0	52	1.00
57834644--57834711	16	4.2	16	96	0	127	38	35	0	26	1.57
57834901--57834927	9	3.0	9	100	0	54	55	11	0	33	1.35
57835015--57835065	22	2.3	22	86	0	66	43	0	1	54	1.11
57837530--57837860	103	3.2	103	93	0	529	32	29	19	18	1.95
57842577--57842635	26	2.4	24	80	8	64	27	0	5	67	1.11
57842579--57842636	25	2.3	26	79	5	66	27	0	5	67	1.12
57849231--57849268	19	2.0	20	89	5	60	50	2	5	42	1.39
57851025--57851147	57	2.3	52	75	23	123	31	1	4	62	1.23
57851980--57852015	15	2.4	15	90	9	56	30	13	2	52	1.55
57852667--57852710	21	2.2	20	83	4	52	72	2	0	25	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57853117--57853173	20	2.6	23	72	18	66	75	8	14	1	1.11
57853124--57853161	20	1.9	20	94	0	67	71	13	13	2	1.26
57853311--57853372	13	4.7	12	74	20	52	77	0	20	1	0.85
57853310--57853369	27	2.4	25	83	8	68	75	0	23	1	0.90
57853968--57854005	17	2.2	17	86	9	51	34	15	7	42	1.76
57853993--57854045	26	2.0	27	85	10	74	26	13	16	43	1.85
57854135--57854217	35	2.3	35	83	2	103	32	8	12	46	1.71
57854194--57854249	19	2.8	20	75	8	60	35	7	10	46	1.66
57854129--57854488	18	21.0	18	68	16	169	30	12	11	45	1.77
57854159--57854273	57	2.0	57	84	3	151	33	13	11	41	1.79
57854135--57854307	91	1.9	90	84	4	231	31	12	12	44	1.78
57854371--57854488	35	3.4	34	79	9	114	30	11	11	46	1.75
57865543--57865572	15	2.0	15	100	0	60	86	6	0	6	0.70
57865544--57865588	15	2.9	15	86	3	54	82	8	6	2	0.93
57866475--57867426	74	12.4	76	85	6	959	27	17	19	35	1.94
57866475--57867385	75	11.9	76	85	5	812	27	16	19	35	1.94
57867780--57867837	29	1.9	30	82	6	73	31	20	6	41	1.79
57868177--57868213	19	1.9	19	94	0	65	70	8	16	5	1.30
57868368--57868424	6	9.7	6	77	11	55	78	0	21	0	0.74
57868364--57868421	28	2.1	29	84	9	77	75	0	24	0	0.80
57868364--57868421	30	2.0	29	86	6	82	75	0	24	0	0.80
57869017--57869054	17	2.2	17	86	9	51	34	15	7	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57869180--57869542	18	21.0	18	68	16	189	29	13	11	45	1.78
57869140--57869227	43	2.0	43	82	4	106	23	13	14	47	1.80
57869181--57869543	35	10.5	34	66	17	153	30	13	11	45	1.79
57879133--57879191	29	2.0	30	90	3	93	28	6	15	49	1.70
57879137--57879200	29	2.2	29	83	8	76	31	9	12	46	1.73
57879261--57879324	29	2.2	28	81	8	74	50	7	3	39	1.47
57886209--57886255	24	2.0	24	82	0	58	65	14	12	6	1.44
57891878--57891917	21	1.9	21	85	10	55	10	5	5	80	1.02
57894259--57894352	48	2.0	48	80	4	109	21	22	18	38	1.93
57896627--57896655	12	2.3	13	94	5	51	44	13	13	27	1.82
57900642--57900668	4	6.8	4	100	0	54	51	25	22	0	1.48
57904341--57904394	23	2.5	22	79	11	58	55	7	0	37	1.28
57904352--57904395	23	1.9	23	86	9	63	54	6	0	38	1.27
57922393--57922431	20	2.0	20	94	0	69	48	2	0	48	1.15
57923595--57923644	26	2.0	24	85	14	66	52	6	8	34	1.55
57928903--57928966	16	3.8	17	70	15	53	62	0	0	37	0.95
57931878--57931912	18	1.9	18	88	0	52	8	11	11	68	1.39
57944234--57944290	25	2.3	25	87	0	78	17	15	17	49	1.81
57944736--57944789	24	2.1	25	83	16	67	53	0	1	44	1.11
57944751--57944804	23	2.3	24	84	6	67	50	0	1	48	1.11
57944935--57944964	11	2.7	11	94	0	51	36	0	3	60	1.14
57944988--57945029	8	5.2	8	81	18	52	76	2	21	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57944986--57945020	13	2.8	12	91	8	52	80	0	20	0	0.72
57945721--57945750	3	10.0	3	92	0	51	33	0	3	63	1.11
57945865--57945902	18	2.1	18	85	9	51	34	0	31	34	1.58
57946112--57946207	39	2.5	39	80	6	108	20	23	28	27	1.99
57948145--57948191	24	2.0	24	86	0	67	38	14	25	21	1.92
57948749--57948788	21	1.9	21	90	10	64	45	12	0	42	1.42
57948758--57948800	21	2.0	21	86	0	59	39	18	2	39	1.64
57952299--57952389	43	2.1	44	95	2	166	50	14	10	24	1.74
57953798--57953843	22	2.0	24	83	8	60	60	2	4	32	1.28
57953837--57953873	19	1.9	19	88	0	56	51	0	8	40	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207