genome.fa.s19.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  145  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44629033--44629067	3	11.7	3	100	0	70	68	31	0	0	0.90
44630384--44630421	19	2.0	19	85	10	51	21	42	0	36	1.53
44632243--44632291	19	2.6	18	84	9	71	42	28	4	24	1.73
44639045--44639343	50	5.8	50	88	3	391	21	29	22	26	1.99
44647928--44647964	10	3.8	10	92	3	58	32	0	2	64	1.07
44653941--44653995	6	9.3	6	77	15	53	83	1	12	1	0.80
44653941--44653992	17	3.0	16	86	8	59	84	1	11	1	0.78
44654684--44654723	10	3.8	10	84	12	53	35	0	2	62	1.09
44662957--44663157	28	7.2	28	85	4	264	30	21	23	24	1.99
44662958--44663147	84	2.3	84	91	1	301	29	21	24	24	1.99
44663261--44663334	26	2.8	27	83	6	98	33	25	22	17	1.96
44663538--44663624	27	3.3	27	77	7	79	25	13	22	37	1.91
44663549--44663963	81	5.1	81	78	9	325	20	17	19	42	1.90
44663550--44663973	54	7.9	53	79	6	329	20	16	20	42	1.90
44663550--44663973	27	15.7	27	78	9	266	20	16	20	42	1.90
44666730--44666859	50	2.6	49	80	2	143	25	24	29	20	1.99
44674164--44674355	50	3.7	50	83	4	204	28	21	27	22	1.99
44698167--44698211	22	2.1	21	87	4	63	68	8	6	15	1.36
44698988--44699091	46	2.3	46	85	5	131	41	1	13	43	1.55
44699800--44699834	18	1.9	18	88	0	52	31	11	14	42	1.81
44702136--44702166	6	5.3	6	96	3	55	51	0	0	48	1.00
44705907--44706114	66	3.2	66	63	16	169	31	15	17	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44705846--44706312	131	3.6	130	88	4	622	33	14	15	36	1.88
44706331--44707071	132	5.6	132	82	3	769	34	13	13	39	1.84
44706447--44707070	65	9.5	65	65	16	219	33	13	13	39	1.84
44706331--44707071	396	1.9	395	82	2	941	34	13	13	39	1.84
44706691--44707435	365	2.0	365	84	2	949	33	13	13	39	1.84
44706557--44708322	497	3.5	494	76	8	1597	33	13	13	38	1.85
44706955--44707152	101	2.0	101	85	2	272	33	11	13	41	1.80
44706823--44707304	233	2.1	233	85	1	644	34	13	13	38	1.84
44707056--44707987	132	7.1	131	81	3	888	33	14	13	38	1.86
44707056--44707987	395	2.4	396	83	1	1152	33	14	13	38	1.86
44707881--44708088	95	2.2	96	89	2	312	33	15	14	36	1.88
44707743--44708212	227	2.1	228	86	1	647	33	14	14	37	1.87
44707969--44708322	132	2.7	132	87	1	487	33	13	15	37	1.86
44707969--44708321	65	5.4	64	66	14	191	33	13	15	37	1.86
44707611--44708493	359	2.4	363	84	3	1129	34	14	13	37	1.86
44707816--44708453	233	2.8	222	78	6	568	34	14	14	37	1.86
44708216--44708413	101	2.0	101	86	0	279	35	9	14	40	1.78
44714530--44714576	25	1.9	24	83	12	60	57	0	4	38	1.18
44715195--44715280	19	4.8	17	76	18	68	56	2	1	39	1.19
44715195--44715279	38	2.3	36	80	11	93	57	2	1	38	1.19
44718662--44718698	18	2.1	18	94	0	65	40	5	24	29	1.77
44721462--44721724	131	2.0	131	97	0	499	40	12	16	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44722323--44722360	17	2.2	17	86	9	51	76	2	2	18	1.02
44722324--44722364	22	1.9	21	90	5	64	78	2	2	17	0.98
44724461--44724510	18	2.8	18	84	6	57	32	14	8	46	1.73
44724496--44724524	14	2.0	15	93	6	51	41	3	6	48	1.47
44727851--44727881	15	2.1	15	93	0	53	54	9	12	22	1.67
44728742--44728784	21	2.0	23	81	9	54	44	11	11	32	1.77
44732321--44732387	25	2.7	25	86	2	82	20	26	17	34	1.96
44737898--44737941	13	3.5	13	82	14	56	68	6	0	25	1.14
44738002--44738308	158	1.9	157	93	0	524	37	13	8	39	1.76
44739570--44739668	52	1.9	52	85	4	137	34	19	20	26	1.96
44739904--44739972	34	2.0	34	100	0	138	5	23	11	59	1.53
44739913--44739975	16	3.8	16	72	15	65	3	23	6	66	1.29
44739971--44740019	25	1.9	26	87	4	73	18	10	8	63	1.50
44742864--44742907	25	1.9	24	82	17	58	45	4	9	40	1.56
44744680--44744732	27	2.0	27	85	14	74	58	5	0	35	1.22
44744665--44744756	46	2.0	46	81	8	107	58	3	2	35	1.26
44744744--44744777	11	3.3	11	88	12	54	50	0	0	50	1.00
44744720--44744787	20	3.3	19	73	15	64	52	0	4	42	1.21
44748640--44748824	43	4.3	43	76	5	149	27	18	21	32	1.96
44748602--44748778	86	2.1	86	79	6	189	26	20	18	33	1.96
44748641--44748803	86	1.9	86	82	5	204	25	17	20	36	1.94
44750245--44750324	39	2.1	39	100	0	160	62	7	5	25	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44767322--44767350	9	3.2	9	100	0	58	68	0	0	31	0.89
44767748--44767784	9	4.1	9	89	0	56	32	10	10	45	1.74
44769396--44769421	12	2.2	12	100	0	52	73	15	0	11	1.11
44769430--44769460	13	2.4	13	94	0	53	41	12	0	45	1.42
44770058--44770308	78	3.3	79	80	9	295	41	3	34	20	1.69
44773043--44773081	17	2.2	19	86	9	55	30	0	28	41	1.57
44773439--44773694	46	5.6	46	80	4	250	28	20	20	29	1.98
44773439--44773693	138	1.8	138	83	3	334	29	20	20	29	1.98
44773514--44773712	46	4.3	45	87	3	254	28	20	22	28	1.99
44773514--44773719	92	2.2	92	84	6	283	29	19	22	28	1.98
44775698--44775888	51	3.8	51	79	5	199	30	27	18	23	1.98
44775700--44775884	101	1.8	101	84	3	255	30	26	19	23	1.98
44779638--44779844	112	1.8	112	87	0	306	34	14	17	33	1.90
44793387--44793418	12	2.7	12	95	0	55	43	12	34	9	1.75
44798436--44798767	27	12.3	27	82	5	352	44	19	15	21	1.87
44798436--44798767	54	6.1	54	84	4	393	44	19	15	21	1.87
44798436--44798772	81	4.2	81	81	3	401	43	19	15	21	1.87
44798970--44799019	26	1.9	26	83	0	64	22	20	18	40	1.92
44799668--44799710	20	2.2	20	100	0	86	46	13	16	23	1.83
44804543--44804592	24	2.1	24	96	0	91	20	10	26	44	1.82
44809068--44809757	346	2.0	345	97	0	1301	35	14	19	30	1.91
44812655--44812691	19	1.9	19	88	0	56	18	16	27	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44815400--44815425	9	2.9	9	100	0	52	65	0	0	34	0.93
44819554--44819758	97	2.1	98	90	5	326	28	8	22	40	1.83
44831150--44831663	44	11.8	43	69	14	238	28	20	23	27	1.99
44831143--44831660	217	2.4	217	89	0	786	28	20	23	27	1.99
44831419--44831624	84	2.4	87	79	11	210	28	19	24	27	1.99
44831501--44831665	89	1.9	89	83	7	219	29	21	23	26	1.99
44833834--44834039	98	2.1	98	95	2	369	29	9	22	38	1.86
44838414--44838631	105	2.1	104	80	5	233	24	25	23	26	2.00
44842220--44842282	30	2.1	30	90	0	99	23	4	14	57	1.56
44843856--44843917	21	3.0	20	79	9	63	29	4	6	59	1.43
44852234--44852265	16	1.9	17	93	6	57	53	0	18	28	1.45
44852521--44852579	30	2.0	31	83	6	77	42	0	33	23	1.55
44857881--44857931	25	1.9	28	84	11	72	45	0	3	50	1.20
44858686--44858739	27	2.0	27	92	0	90	16	20	20	42	1.89
44864919--44864970	19	2.9	17	81	10	59	38	11	17	32	1.85
44864929--44864972	19	2.1	22	88	12	67	38	9	18	34	1.82
44870532--44870569	6	6.7	6	82	11	53	78	2	18	0	0.86
44870525--44870562	17	2.2	18	86	13	62	81	2	15	0	0.80
44870522--44870569	11	4.5	11	86	2	64	81	2	16	0	0.79
44870522--44870566	16	2.9	16	87	12	67	82	2	15	0	0.77
44871810--44872688	88	10.1	88	86	5	1033	24	23	26	26	2.00
44872109--44872685	261	2.2	262	87	1	834	25	22	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44872699--44873114	133	3.1	133	84	2	448	30	15	25	28	1.95
44872698--44873084	177	2.2	175	89	0	585	30	15	24	29	1.96
44872698--44873114	44	9.5	44	81	4	446	30	15	25	28	1.96
44873418--44873492	19	3.8	19	91	6	123	33	10	20	36	1.87
44884760--44884800	19	2.1	20	86	4	57	31	4	4	58	1.40
44885248--44885282	15	2.3	15	95	0	61	22	0	11	65	1.24
44896254--44896302	26	1.9	26	88	12	75	16	12	8	63	1.51
44896967--44897715	133	5.7	130	83	5	794	28	17	25	28	1.97
44896968--44897715	221	3.4	221	86	2	988	28	17	25	28	1.97
44896995--44897715	310	2.3	310	87	1	1045	28	17	25	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207