genome.fa.s19.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  207  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62483777--62484364	240	2.5	237	79	5	659	43	9	15	31	1.78
62486906--62486954	21	2.3	22	86	10	66	65	6	4	24	1.33
62496995--62497049	24	2.4	21	75	16	56	60	0	0	40	0.97
62497240--62497316	30	2.5	31	79	10	86	37	12	6	42	1.69
62497240--62497324	31	2.7	31	75	10	75	35	15	5	43	1.71
62502939--62502978	16	2.5	16	95	0	71	37	40	20	2	1.66
62507195--62507221	2	13.5	2	100	0	54	51	0	0	48	1.00
62508298--62508374	37	2.1	38	87	2	111	35	7	28	28	1.85
62513391--62513446	9	5.6	10	78	21	64	35	1	0	62	1.06
62513380--62513450	13	6.5	11	78	18	53	38	2	0	59	1.12
62513380--62513450	9	6.5	11	75	21	53	38	2	0	59	1.12
62513433--62513473	19	2.2	19	91	4	66	29	0	0	70	0.87
62513380--62513465	40	2.1	41	85	8	113	37	2	0	60	1.10
62513401--62513492	30	3.0	31	81	10	100	34	1	1	63	1.09
62529263--62529304	22	1.9	22	90	0	66	33	2	0	64	1.07
62543293--62543324	15	2.1	16	94	5	57	28	31	18	21	1.97
62547029--62547068	16	2.5	17	80	19	50	20	20	30	30	1.97
62555045--62555089	22	2.0	22	91	8	74	40	0	0	60	0.97
62556588--62556634	12	4.2	11	81	13	51	57	0	2	40	1.11
62567259--62567291	15	2.2	15	94	0	57	42	15	0	42	1.46
62569988--62570055	31	2.2	31	91	0	109	32	14	11	41	1.82
62570496--62570566	29	2.3	30	83	11	83	35	12	11	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62570509--62570566	29	2.0	30	86	10	84	34	12	12	41	1.79
62570520--62570587	30	2.3	29	80	5	82	38	11	11	38	1.79
62573171--62573218	4	12.0	4	90	0	78	75	0	25	0	0.81
62573376--62573440	4	16.2	4	96	0	112	26	3	24	46	1.67
62576768--62576825	9	6.2	9	76	11	55	63	1	0	34	1.04
62576768--62576825	19	3.1	19	80	2	73	63	1	0	34	1.04
62579199--62579306	34	3.2	33	80	6	101	41	0	10	48	1.37
62579378--62580010	126	5.0	126	91	0	1016	37	17	18	27	1.92
62583599--62583633	18	1.9	18	88	0	52	40	2	25	31	1.70
62585234--62585273	11	3.6	11	86	6	55	52	0	25	22	1.47
62587271--62587325	27	2.0	27	100	0	110	18	3	29	49	1.64
62589906--62589961	28	2.0	28	100	0	112	17	21	17	42	1.89
62617925--62617993	31	2.3	31	85	7	88	21	10	20	47	1.79
62618085--62618141	29	2.0	29	85	0	78	40	14	7	38	1.73
62618889--62618915	2	13.5	2	100	0	54	51	0	0	48	1.00
62623663--62623702	20	2.0	20	90	9	64	35	12	7	45	1.70
62623800--62623838	20	2.0	20	94	0	69	48	2	0	48	1.15
62626455--62626491	18	2.0	18	89	5	56	18	18	13	48	1.80
62630909--62630944	8	4.5	8	85	0	54	38	0	11	50	1.38
62653207--62653260	23	2.3	23	78	6	56	35	20	12	31	1.90
62660375--62660408	17	2.0	17	94	0	59	44	50	0	5	1.26
62665014--62665047	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62672388--62672448	31	2.0	31	90	0	95	49	8	11	31	1.68
62683901--62684057	31	5.1	30	73	13	97	38	14	5	41	1.68
62683901--62684106	62	3.3	62	78	11	169	38	13	7	41	1.72
62683932--62684053	31	3.9	32	75	8	110	40	16	4	39	1.67
62689233--62689853	322	1.9	324	85	4	858	26	16	28	28	1.97
62689840--62689867	14	2.0	14	100	0	56	21	0	35	42	1.53
62698838--62698884	23	2.1	21	84	7	58	42	19	6	31	1.76
62702695--62702742	24	1.9	26	87	8	73	52	0	18	29	1.46
62703674--62703906	69	3.3	69	81	11	274	32	16	17	33	1.93
62710840--62710886	16	2.9	16	75	9	51	63	0	0	36	0.94
62710823--62710908	27	3.1	27	75	11	66	62	2	0	34	1.08
62716194--62716222	3	9.7	3	100	0	58	68	0	0	31	0.89
62716244--62716270	3	9.0	3	100	0	54	66	0	33	0	0.92
62716573--62716608	14	2.6	14	90	0	54	41	0	2	55	1.14
62719790--62719831	20	2.0	21	86	9	59	52	14	14	19	1.75
62721058--62721090	17	1.9	17	93	0	57	60	0	0	39	0.97
62729929--62729985	29	2.0	29	100	0	114	56	3	12	28	1.52
62737133--62737193	11	5.8	11	68	24	51	40	0	0	59	0.98
62737152--62737202	23	2.1	24	89	7	77	41	0	0	58	0.98
62743350--62743399	23	2.2	21	80	13	55	44	0	4	52	1.20
62747327--62747625	155	1.9	154	86	3	422	52	16	8	23	1.70
62749170--62749218	22	2.4	21	83	12	66	65	0	2	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62750169--62750195	11	2.5	11	100	0	54	0	0	7	92	0.38
62752857--62752908	6	8.7	6	77	8	52	23	1	0	75	0.91
62752857--62752918	30	2.1	30	93	3	108	27	1	0	70	0.96
62754341--62754378	20	1.9	20	89	10	60	55	15	10	18	1.68
62755387--62755448	30	2.1	30	82	11	74	48	6	0	45	1.28
62755613--62755640	13	2.2	13	100	0	56	50	21	0	28	1.49
62757959--62758247	97	3.0	96	81	6	332	47	19	15	17	1.83
62768652--62768685	17	2.1	16	88	5	50	70	0	0	29	0.87
62768650--62768692	14	2.9	14	83	13	50	74	0	0	25	0.82
62769037--62769201	62	2.7	60	79	7	190	50	7	20	21	1.72
62769929--62769978	3	16.7	3	100	0	100	0	0	68	32	0.90
62780044--62780468	104	4.1	104	91	1	647	40	16	11	31	1.83
62785352--62785413	29	2.1	29	96	0	115	27	8	14	50	1.71
62785425--62785463	20	1.9	21	89	5	62	28	0	2	69	1.02
62792670--62792707	20	2.0	20	89	5	60	18	5	2	73	1.14
62792715--62792755	16	2.7	16	88	7	59	39	2	0	58	1.11
62796197--62796248	22	2.4	22	93	0	86	30	23	21	25	1.99
62802607--62802654	23	2.1	23	88	3	71	22	6	8	62	1.46
62803380--62803453	31	2.4	31	84	6	89	32	12	13	41	1.81
62813241--62813279	20	2.0	20	85	5	53	33	0	7	58	1.26
62818549--62818597	20	2.3	20	82	6	53	18	0	8	73	1.07
62818651--62818690	21	1.9	21	89	0	62	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62818911--62818958	23	2.1	23	100	0	96	20	12	22	43	1.86
62841202--62841317	54	2.1	55	82	3	135	39	7	15	37	1.76
62843888--62843961	32	2.3	33	80	15	84	27	10	12	50	1.73
62854005--62854046	18	2.3	19	87	8	68	42	7	4	45	1.52
62855484--62855531	24	2.0	24	91	0	78	52	8	25	14	1.69
62860363--62860396	17	2.1	15	89	10	50	5	64	0	29	1.17
62865359--62865401	11	3.7	11	79	11	50	55	2	2	39	1.25
62886747--62886776	6	5.0	6	95	0	51	16	63	16	3	1.44
62897513--62897540	2	14.0	2	100	0	56	0	50	0	50	1.00
62904725--62904813	18	4.7	18	69	17	56	30	3	3	62	1.27
62921596--62921663	33	2.1	33	83	5	84	44	7	17	30	1.76
62922570--62922616	23	2.0	23	95	0	85	23	4	10	61	1.46
62944172--62944339	87	1.9	88	89	3	259	39	5	20	33	1.76
62952359--62952393	16	2.2	16	100	0	70	28	5	11	54	1.59
62953346--62953404	30	2.0	30	86	0	82	40	6	23	28	1.80
62953741--62953943	33	5.6	33	70	21	147	22	17	26	33	1.96
62953775--62954028	42	6.5	41	71	20	195	24	15	25	34	1.95
62953742--62953985	75	3.3	75	90	1	373	23	16	25	34	1.96
62953924--62954028	43	2.5	42	89	4	149	24	13	25	36	1.92
62953849--62954063	118	1.8	117	88	1	331	24	16	26	32	1.96
62960888--62960934	21	2.2	22	85	11	71	23	0	10	65	1.23
62960895--62960935	21	2.0	20	95	4	73	24	0	9	65	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62962267--62962311	23	2.0	23	95	0	81	26	42	4	26	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207

The End!