genome.fa.s19.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  174  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53691373--53691435	31	2.1	31	96	3	119	34	11	6	47	1.64
53691923--53691982	15	4.3	14	80	17	63	6	13	3	76	1.11
53696872--53696934	18	3.4	18	75	14	58	61	1	4	31	1.26
53696912--53696945	14	2.3	15	90	5	52	58	5	8	26	1.51
53705414--53705438	12	2.1	12	100	0	50	24	32	8	36	1.84
53706454--53706831	122	3.0	122	81	8	418	29	19	25	25	1.98
53706056--53706831	254	3.0	253	87	5	1017	29	18	25	25	1.98
53706033--53706865	386	2.1	393	86	5	1159	29	18	25	26	1.98
53706033--53706865	132	6.4	132	85	4	1073	29	18	25	26	1.98
53706891--53707005	51	2.3	51	83	3	133	29	21	20	27	1.98
53707703--53707735	5	6.6	5	89	10	50	18	0	0	81	0.68
53707709--53707735	14	1.9	14	100	0	54	18	0	0	81	0.69
53708437--53708503	16	4.1	16	72	22	59	23	7	0	68	1.15
53708699--53708787	3	30.0	3	73	6	74	30	7	1	60	1.32
53711446--53712577	59	19.2	59	90	0	1674	45	4	3	46	1.41
53712284--53712321	19	2.0	20	89	5	60	36	0	5	57	1.21
53711470--53712553	32	36.8	29	63	21	246	45	4	3	46	1.40
53718278--53718415	66	2.1	65	82	5	161	42	21	23	13	1.87
53718755--53718836	43	1.9	43	92	0	137	28	15	28	28	1.96
53721573--53721630	22	2.6	22	81	7	64	41	17	5	36	1.72
53721957--53725089	132	23.9	132	92	2	5055	29	23	17	28	1.97
53722734--53722915	44	4.1	44	64	13	113	31	23	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53723011--53723583	44	13.1	44	63	16	181	30	23	17	27	1.97
53723029--53723400	88	4.2	88	65	10	229	30	24	17	27	1.97
53727426--53727929	267	1.9	262	86	8	727	29	22	18	29	1.98
53727945--53730399	257	9.5	263	93	4	4120	29	23	18	28	1.98
53729472--53729659	44	4.4	43	67	16	124	28	24	16	30	1.96
53729623--53729803	44	4.1	45	64	14	99	29	22	20	27	1.99
53727945--53730399	132	19.0	132	92	4	4112	29	23	18	28	1.98
53730148--53730328	44	4.1	44	66	13	111	30	21	19	28	1.97
53734327--53734372	24	1.9	24	86	0	65	10	26	17	45	1.81
53737225--53737282	22	2.6	22	81	7	64	41	17	5	36	1.72
53737238--53737371	19	6.8	19	89	3	160	39	13	7	39	1.73
53737261--53737364	38	2.7	38	92	0	181	39	11	7	41	1.70
53738461--53738513	19	2.8	20	78	21	60	35	1	5	56	1.34
53738581--53738773	106	1.9	103	86	7	275	44	7	8	40	1.62
53764585--53764716	68	2.0	67	92	4	221	21	6	21	50	1.70
53771777--53771831	23	2.3	24	81	3	67	38	0	3	58	1.16
53772450--53772679	96	2.4	96	83	4	286	39	3	18	38	1.68
53772689--53772741	16	3.4	16	71	23	58	37	1	5	54	1.35
53772684--53772746	31	2.0	31	100	0	126	38	3	7	50	1.47
53772743--53773159	126	3.3	126	93	1	710	31	18	22	27	1.97
53775622--53775659	17	2.2	17	100	0	76	52	18	13	15	1.74
53776854--53776896	18	2.4	18	80	0	50	41	9	27	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53778530--53778580	22	2.3	22	82	0	66	35	21	23	19	1.96
53778559--53778616	25	2.3	25	85	5	73	37	22	22	17	1.93
53778963--53778992	15	2.0	15	93	0	51	63	0	0	36	0.95
53779641--53779666	11	2.4	11	100	0	52	0	42	7	50	1.31
53785212--53785294	25	3.3	25	88	3	114	37	20	22	19	1.94
53785584--53785616	5	6.6	5	92	0	57	18	3	0	78	0.87
53788852--53788957	41	2.6	41	95	0	185	21	21	25	31	1.98
53792674--53792712	20	1.9	21	84	5	53	0	33	5	61	1.18
53795554--53795841	126	2.3	126	91	0	459	31	19	21	27	1.98
53799131--53799187	21	2.7	21	78	5	53	7	17	43	31	1.76
53799428--53799470	18	2.4	18	88	0	59	44	9	27	18	1.80
53801210--53801280	30	2.2	31	80	19	74	52	4	2	40	1.36
53801288--53801330	10	4.0	10	82	14	50	44	0	32	23	1.54
53823710--53823790	31	2.7	30	81	9	85	41	7	6	44	1.57
53825689--53825796	15	7.2	15	65	15	53	46	7	20	25	1.77
53825685--53825796	30	3.7	30	93	0	188	47	7	20	25	1.75
53830380--53830487	15	7.2	15	68	12	78	44	7	21	26	1.78
53830374--53830497	30	4.1	30	92	1	194	43	6	23	26	1.78
53842289--53842354	35	1.9	34	84	6	89	45	13	7	33	1.72
53847631--53847671	21	1.9	22	85	5	57	26	2	7	63	1.33
53848108--53848171	13	4.9	13	76	14	60	34	7	21	35	1.83
53848110--53848171	26	2.4	26	76	10	72	35	8	20	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53850437--53850488	27	1.9	27	88	0	77	61	5	23	9	1.48
53855641--53855691	19	2.7	19	77	17	52	66	3	0	29	1.09
53855778--53855824	22	2.3	19	82	13	58	55	6	2	36	1.37
53855780--53855830	20	2.4	22	87	9	70	54	7	1	35	1.40
53857162--53857203	2	21.0	2	95	0	75	47	50	2	0	1.14
53857165--53857211	8	5.9	8	94	0	58	44	48	6	0	1.28
53867866--53867891	13	2.0	13	100	0	52	30	23	15	30	1.95
53872379--53872410	16	2.1	15	94	5	55	50	12	0	37	1.41
53872754--53872799	16	2.9	16	79	20	53	52	2	2	43	1.25
53880630--53880853	104	2.2	104	92	1	369	31	31	19	17	1.95
53881182--53881245	30	2.2	29	81	10	76	29	28	6	35	1.82
53881189--53881245	30	1.9	30	85	3	80	29	24	7	38	1.82
53892037--53892067	2	15.5	2	100	0	62	48	0	51	0	1.00
53896722--53896757	17	2.1	17	90	10	56	55	2	0	41	1.14
53898753--53898810	29	2.0	29	86	6	82	56	0	0	43	0.99
53898767--53898809	9	4.4	9	88	5	50	55	0	0	44	0.99
53898772--53898809	19	2.1	18	95	5	67	52	0	0	47	1.00
53898766--53898810	10	4.5	11	81	18	62	57	0	0	42	0.98
53899688--53899795	55	2.0	55	88	0	162	34	17	21	26	1.96
53904114--53904191	28	2.6	31	74	8	72	32	5	1	61	1.26
53909968--53910008	21	1.9	23	85	14	61	26	19	19	34	1.96
53913736--53913789	27	2.0	28	85	3	74	18	5	14	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53915701--53915790	45	2.0	45	95	0	162	35	12	10	42	1.76
53915946--53915975	14	2.1	14	93	0	51	46	10	13	30	1.75
53917179--53917219	21	2.0	21	90	0	64	2	39	19	39	1.65
53920641--53920675	17	2.1	17	88	0	52	42	11	11	34	1.77
53921931--53921988	18	3.2	18	75	18	66	46	0	13	39	1.44
53922630--53922801	7	24.7	7	67	10	57	40	36	3	19	1.69
53922630--53922782	14	10.9	14	69	13	64	40	35	3	20	1.69
53922637--53922709	29	2.5	29	90	0	119	35	39	5	19	1.75
53922863--53922936	7	10.6	7	80	0	67	50	28	0	21	1.49
53922863--53922936	21	3.5	21	83	3	87	50	28	0	21	1.49
53923032--53923071	21	1.9	21	94	0	71	52	32	0	15	1.43
53925397--53925605	91	2.3	90	83	4	249	25	12	24	36	1.91
53929801--53929842	18	2.5	17	80	7	50	52	7	0	40	1.29
53930270--53930336	16	3.9	18	73	15	61	70	7	1	20	1.20
53931741--53931793	25	2.1	25	82	6	63	52	1	22	22	1.56
53939861--53939902	21	2.0	22	81	13	52	57	11	11	19	1.65
53941495--53941533	20	1.9	21	84	5	53	23	23	15	38	1.92
53976279--53976314	18	2.0	18	100	0	72	44	16	11	27	1.82
53977571--53977605	18	1.9	18	88	0	52	51	0	5	42	1.25
53978620--53978671	27	1.9	27	92	0	86	30	23	30	15	1.95
53979243--53979338	19	5.2	19	78	5	115	37	13	0	48	1.43
53979247--53979338	37	2.5	37	94	0	157	36	14	0	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53979563--53979628	19	3.5	19	79	4	89	50	1	10	37	1.47
53979940--53980016	27	2.9	27	88	0	109	19	32	20	27	1.97
53979940--53980025	27	3.2	26	83	6	100	18	30	23	27	1.98
53980085--53980122	20	1.9	20	89	10	60	47	2	0	50	1.15
53986614--53986649	10	3.7	10	85	7	56	58	0	8	33	1.28
53990949--53991150	37	5.2	37	84	11	237	26	21	15	36	1.93
53991054--53991420	46	7.6	46	86	7	437	28	22	13	34	1.93
53991097--53991414	52	6.3	52	86	7	417	28	22	13	34	1.92
53991054--53991406	196	1.8	196	92	0	598	28	22	13	34	1.93
53991054--53991420	98	3.7	97	84	9	492	28	22	13	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207