genome.fa.s19.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  131  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40058751--40058892	43	3.3	43	85	1	178	31	23	18	26	1.97
40064849--40064901	14	3.9	14	85	4	65	35	0	1	62	1.06
40064850--40064888	7	5.9	7	88	11	64	41	0	0	58	0.98
40068369--40068443	30	2.5	30	80	2	89	29	18	12	40	1.87
40071794--40071874	43	1.9	43	89	2	128	53	2	22	22	1.58
40076685--40076767	6	14.5	6	70	12	50	74	7	2	15	1.14
40076687--40076721	16	2.3	15	90	5	52	77	5	0	17	0.96
40076685--40076767	24	3.7	22	75	9	78	74	7	2	15	1.14
40076732--40076769	17	2.3	17	86	4	51	76	5	2	15	1.08
40078182--40078210	8	3.6	8	100	0	58	89	0	0	10	0.48
40084613--40084756	72	2.0	72	94	0	252	31	15	12	40	1.84
40084803--40084865	26	2.4	26	97	2	117	15	28	3	52	1.58
40091012--40091060	20	2.5	20	83	6	64	48	2	24	24	1.61
40091782--40091829	18	2.7	20	72	21	52	50	2	0	47	1.12
40091992--40092031	21	2.0	20	85	5	53	37	40	10	12	1.77
40091992--40092042	20	2.5	21	83	3	59	39	33	9	17	1.83
40092117--40092204	35	2.5	36	80	9	92	17	4	36	42	1.69
40100481--40100513	15	2.2	15	94	0	57	51	0	6	42	1.26
40101280--40101345	16	4.4	16	67	27	54	54	0	25	19	1.44
40102599--40102694	49	2.0	48	91	2	156	43	5	26	25	1.75
40107958--40108021	15	3.9	16	77	18	69	43	1	7	46	1.42
40108784--40108869	43	2.0	43	90	0	136	50	1	24	24	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40110949--40110987	20	2.0	20	94	0	69	43	15	12	28	1.83
40112956--40113010	23	2.3	23	84	3	74	30	12	29	27	1.93
40113000--40113051	24	2.2	24	85	0	68	26	21	25	26	1.99
40115992--40116024	14	2.2	16	89	10	52	30	3	0	66	1.06
40118631--40119037	126	3.2	126	89	2	613	33	18	20	27	1.96
40122041--40122251	116	1.8	116	84	0	287	45	4	7	42	1.52
40122431--40122470	21	1.9	21	84	0	53	7	22	37	32	1.82
40122727--40122769	18	2.4	18	88	0	59	44	9	27	18	1.80
40123394--40123419	7	3.7	7	100	0	52	57	15	0	26	1.38
40124625--40124661	11	3.4	11	84	0	56	43	0	35	21	1.53
40124627--40124683	22	2.5	24	83	13	77	45	0	31	22	1.53
40125602--40125650	22	2.2	22	85	7	64	20	14	6	59	1.56
40125874--40125907	12	2.8	12	90	0	50	67	0	0	32	0.91
40130028--40130085	29	2.0	29	86	10	82	10	39	12	37	1.77
40131430--40131720	50	5.9	50	74	10	260	25	17	26	29	1.98
40131434--40131712	101	2.8	101	88	5	394	25	17	26	30	1.98
40137895--40137942	24	2.0	24	84	8	62	50	2	22	25	1.60
40139379--40139404	12	2.2	12	100	0	52	38	0	0	61	0.96
40140041--40140078	21	1.9	20	84	10	51	31	2	5	60	1.33
40140051--40140105	29	1.9	30	85	14	80	32	0	7	60	1.24
40145079--40145120	21	2.0	22	90	4	68	71	9	0	19	1.13
40147784--40148305	159	3.4	151	85	5	735	53	8	8	30	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40148435--40148474	19	2.1	19	85	0	53	17	0	7	75	1.03
40149118--40149171	20	2.7	20	72	8	56	37	0	1	61	1.07
40149118--40149210	22	4.4	21	69	21	61	31	0	3	65	1.08
40149300--40149329	16	1.9	15	93	6	51	13	0	6	80	0.91
40149535--40149731	87	2.2	88	85	4	263	39	21	8	30	1.83
40152581--40152809	96	2.4	97	79	11	231	48	13	7	30	1.71
40153559--40153586	10	2.8	10	100	0	56	42	0	10	46	1.38
40155576--40155630	29	2.0	27	89	7	83	38	12	0	49	1.41
40155933--40155982	13	3.9	12	79	10	55	42	2	18	38	1.61
40164069--40164117	21	2.3	21	92	0	80	24	6	26	42	1.78
40168583--40168674	13	7.0	13	84	7	114	34	2	5	57	1.34
40168582--40168715	66	2.0	66	81	11	159	34	2	5	56	1.39
40168710--40168743	15	2.3	15	94	0	59	41	14	2	41	1.61
40171316--40171372	26	2.2	26	96	0	105	45	7	28	19	1.76
40173046--40173076	4	7.8	4	92	0	53	77	0	22	0	0.77
40174656--40174754	52	1.9	52	89	4	155	30	31	0	38	1.58
40174707--40174757	22	2.3	22	87	12	70	31	31	0	37	1.58
40174791--40174859	32	2.2	32	94	0	120	34	1	0	63	1.03
40175733--40175771	20	1.9	19	85	10	51	30	2	12	53	1.52
40177189--40178016	144	5.9	144	85	7	1146	43	26	0	29	1.59
40177789--40177834	22	2.1	22	91	0	74	41	30	0	28	1.56
40177189--40177993	29	28.3	29	86	6	1105	43	26	0	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40178017--40178140	56	2.2	56	89	2	187	37	13	7	41	1.72
40181663--40181725	29	2.2	28	82	2	72	47	15	12	23	1.80
40186271--40186368	24	4.0	24	72	16	76	32	21	27	18	1.96
40186303--40186448	25	5.8	25	71	16	88	32	20	28	19	1.97
40196249--40196318	35	2.0	34	86	8	97	45	1	4	48	1.30
40196276--40196336	24	2.5	23	80	15	61	45	1	4	47	1.34
40196253--40196334	35	2.4	34	80	8	94	46	1	4	47	1.31
40196448--40196474	7	3.9	7	100	0	54	29	0	11	59	1.32
40197635--40197671	12	3.1	12	88	0	56	45	0	10	43	1.39
40197846--40197909	27	2.5	27	80	12	73	39	0	26	34	1.57
40217253--40217286	14	2.5	14	95	4	61	14	0	35	50	1.44
40229416--40229440	13	1.9	13	100	0	50	84	0	0	16	0.63
40232965--40233031	9	7.4	9	86	0	89	40	25	10	23	1.86
40232965--40233031	27	2.5	27	90	0	107	40	25	10	23	1.86
40233055--40233104	6	7.7	7	95	4	56	20	2	14	64	1.39
40233063--40233104	6	6.8	6	97	2	75	19	0	14	66	1.25
40233132--40233175	18	2.4	18	88	0	61	13	2	43	40	1.57
40234642--40234672	6	5.2	6	100	0	62	16	32	0	51	1.44
40235652--40235763	37	3.0	37	89	0	170	33	4	16	46	1.67
40235770--40235830	9	6.6	9	79	7	59	27	8	26	37	1.85
40235761--40235830	18	3.8	18	77	7	59	28	7	25	38	1.82
40235760--40235815	20	3.0	18	77	10	58	25	7	26	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40235760--40235832	38	1.9	38	82	0	92	27	6	24	41	1.80
40237368--40237439	30	2.4	30	76	4	74	30	37	16	15	1.90
40237822--40237861	21	1.9	21	84	0	53	35	45	17	2	1.62
40237983--40238286	49	6.2	49	93	0	509	41	2	7	48	1.44
40241242--40241653	125	3.3	124	93	1	664	29	19	18	32	1.96
40241848--40241873	6	4.3	6	100	0	52	38	46	0	15	1.46
40258758--40258785	13	2.2	13	100	0	56	50	7	0	42	1.30
40262184--40262213	3	10.3	3	92	7	53	0	36	0	63	0.95
40265364--40265425	28	2.2	28	83	8	83	30	40	16	12	1.86
40269370--40269703	42	7.9	42	90	1	524	35	21	20	22	1.96
40269369--40269703	171	2.0	170	91	0	544	35	21	20	22	1.96
40270023--40270072	21	2.4	21	79	0	64	2	46	18	34	1.60
40275585--40275809	9	24.8	9	75	8	179	32	3	16	48	1.61
40279113--40279329	114	1.9	114	80	5	251	29	22	22	25	1.99
40279475--40279691	115	1.9	114	90	1	344	24	23	16	35	1.95
40279612--40279766	75	2.1	75	91	0	247	23	22	15	38	1.93
40279503--40279880	189	2.0	190	91	0	614	25	24	15	35	1.94
40279687--40280242	114	4.9	114	90	0	862	26	25	15	33	1.95
40279687--40280242	227	2.4	228	91	0	889	26	25	15	33	1.95
40283536--40283662	42	2.8	45	69	20	102	40	6	5	47	1.52
40287995--40288041	21	2.2	21	92	0	76	34	21	44	0	1.52
40288450--40288571	42	2.9	43	88	2	192	22	19	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40288476--40288667	98	1.9	100	91	2	316	20	18	23	36	1.95
40288519--40288628	56	1.9	57	92	1	186	20	16	23	39	1.92
40288576--40288667	42	2.2	41	96	1	166	18	19	26	35	1.95
40289611--40289647	16	2.3	16	90	0	56	72	0	0	27	0.84
40302574--40302614	19	2.2	19	83	12	50	17	0	24	58	1.38
40306716--40306754	9	4.2	9	86	3	51	43	2	33	20	1.65
40308645--40308769	44	2.8	44	81	4	146	42	6	4	47	1.48
40319175--40319260	33	2.7	32	77	13	95	45	18	9	26	1.80
40319251--40319290	20	2.0	20	90	0	62	45	15	10	30	1.78
40322490--40322620	69	1.9	66	84	7	174	45	13	10	30	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207