genome.fa.s19.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  120  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36464017--36464377	50	7.2	50	63	2	141	32	21	21	24	1.98
36463985--36464471	101	4.8	101	92	1	782	30	21	22	25	1.99
36465077--36465134	19	3.0	19	87	2	89	39	8	13	37	1.76
36465077--36465153	38	1.9	41	87	10	115	37	7	14	40	1.75
36466980--36467020	17	2.3	19	87	8	59	34	0	2	63	1.08
36466980--36467020	9	4.6	9	87	6	57	34	0	2	63	1.08
36467095--36467122	6	4.7	6	100	0	56	32	0	0	67	0.91
36477863--36477898	11	3.2	11	96	4	63	33	8	38	19	1.82
36477863--36477899	12	3.2	12	88	7	58	32	8	40	18	1.80
36482753--36482783	9	3.4	9	90	0	53	45	12	9	32	1.75
36482871--36482934	19	3.4	19	82	8	69	57	4	0	37	1.19
36483508--36483607	33	3.2	32	85	7	141	39	4	3	54	1.35
36483562--36483602	21	2.0	21	85	9	57	41	2	0	56	1.13
36484282--36484660	192	2.0	191	97	0	713	31	13	15	39	1.87
36486835--36486987	41	3.7	41	86	0	171	18	22	26	33	1.96
36491443--36491571	20	6.4	20	74	0	114	38	20	20	19	1.93
36491434--36491571	40	3.5	40	83	0	159	39	21	21	18	1.93
36492314--36492365	26	2.0	26	88	0	77	32	17	26	23	1.96
36492319--36492372	26	2.1	26	85	0	72	31	18	29	20	1.96
36492422--36492593	32	5.4	32	75	6	161	35	20	22	20	1.96
36492442--36492595	64	2.4	64	91	0	245	34	22	22	20	1.97
36492767--36492848	24	3.5	23	85	5	101	47	28	7	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36492898--36493067	27	6.3	27	85	1	128	24	21	18	35	1.96
36492885--36493041	81	1.9	81	82	5	192	26	21	18	33	1.96
36496027--36496075	20	2.5	20	89	0	71	55	10	6	28	1.57
36496027--36496078	25	2.1	25	85	0	68	55	11	5	26	1.58
36500570--36500958	82	4.7	82	80	5	349	45	10	15	29	1.78
36500570--36500946	164	2.3	162	81	3	414	46	10	15	28	1.78
36501087--36501137	13	3.9	13	80	12	52	64	1	0	33	1.05
36503197--36503435	82	2.9	82	84	3	311	46	11	15	26	1.79
36503573--36503622	26	2.0	25	84	4	64	62	2	0	36	1.07
36504116--36504156	20	2.0	20	90	0	64	51	12	7	29	1.66
36508042--36508077	18	2.1	17	94	5	63	52	5	38	2	1.39
36507898--36508953	554	1.9	553	83	3	1388	38	12	26	22	1.91
36521593--36521665	25	2.9	25	91	0	119	27	19	16	36	1.93
36529494--36529518	11	2.3	11	100	0	50	56	0	8	36	1.29
36531915--36531986	35	2.1	35	89	5	110	30	19	18	31	1.95
36535888--36535918	9	3.4	9	100	0	62	45	9	0	45	1.36
36535883--36535943	15	3.9	15	80	18	70	49	9	1	39	1.46
36535881--36535956	33	2.3	33	80	19	88	51	7	1	39	1.39
36540200--36540429	115	2.0	115	94	0	406	31	19	9	40	1.83
36543601--36543680	25	3.2	26	75	8	76	27	18	25	28	1.98
36549309--36549359	21	2.4	22	80	12	61	39	0	7	52	1.30
36551795--36551823	14	2.0	15	93	6	51	27	0	34	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36552530--36552556	14	1.9	14	100	0	54	33	37	0	29	1.58
36554444--36554495	9	5.7	9	79	4	50	19	40	5	34	1.75
36554443--36554488	19	2.5	20	86	10	62	21	39	4	34	1.73
36565361--36565545	101	1.8	102	87	3	275	24	17	27	30	1.97
36565352--36565540	51	3.7	51	79	7	217	25	17	28	29	1.97
36565771--36565802	16	2.0	16	93	0	55	59	0	15	25	1.36
36571184--36571243	30	2.0	30	83	6	77	48	11	6	33	1.66
36579028--36579121	46	2.1	46	97	2	181	34	22	20	23	1.97
36580882--36580961	27	3.0	27	96	0	142	25	10	20	45	1.81
36592233--36592325	29	3.2	29	76	11	93	15	23	23	37	1.93
36592258--36592336	29	2.7	29	75	9	81	15	22	20	41	1.89
36597544--36597712	43	3.7	43	71	14	140	38	1	21	37	1.64
36597405--36597802	95	4.1	95	82	7	412	40	2	17	39	1.64
36597377--36597847	103	4.7	102	79	10	449	41	2	16	39	1.63
36601111--36601207	34	2.7	36	85	7	128	46	7	2	44	1.42
36601707--36601768	30	2.1	30	81	6	72	6	11	46	35	1.65
36601718--36601787	30	2.3	30	82	4	79	5	12	45	35	1.66
36603002--36603083	41	2.0	41	100	0	164	26	21	24	26	2.00
36603499--36603546	11	4.4	11	80	17	55	41	0	35	22	1.54
36603507--36603549	10	4.0	10	82	14	50	44	0	32	23	1.54
36614336--36614417	6	13.8	6	97	1	148	18	0	13	68	1.21
36616083--36616131	20	2.5	20	79	0	53	16	10	4	69	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36622963--36623032	27	2.6	26	93	4	113	40	10	0	50	1.36
36623095--36623161	27	2.5	27	87	0	98	28	29	26	14	1.96
36623296--36623334	19	2.0	21	85	10	55	23	0	10	66	1.22
36623601--36623653	26	2.0	26	92	0	88	45	0	7	47	1.31
36623659--36623689	12	2.6	12	94	0	53	19	0	19	61	1.35
36624246--36624290	18	2.5	18	81	0	63	28	8	48	13	1.72
36630096--36630201	4	26.2	4	72	17	60	0	34	0	65	0.93
36630085--36630124	19	2.1	19	90	0	62	0	37	0	62	0.95
36630115--36630210	30	3.1	31	82	12	101	0	36	0	63	0.95
36630095--36630167	26	3.0	24	69	15	60	0	34	0	65	0.93
36630113--36630201	34	2.6	35	78	16	98	0	33	0	66	0.92
36630145--36630212	18	4.1	18	71	21	58	0	38	0	61	0.96
36630244--36630310	27	2.5	27	95	0	116	14	26	29	28	1.96
36630368--36630436	26	2.6	26	90	2	102	55	0	2	42	1.15
36637032--36637211	21	8.6	21	67	4	96	20	20	17	42	1.90
36637065--36637241	42	4.2	42	82	6	189	17	20	18	42	1.89
36637065--36637227	84	1.9	84	85	2	220	17	20	19	42	1.89
36646324--36646396	19	3.8	19	92	0	128	36	8	16	38	1.79
36646603--36646647	23	2.0	23	81	0	54	20	2	15	62	1.43
36651851--36651883	7	4.7	7	100	0	66	42	42	0	15	1.46
36661138--36661201	21	3.2	21	63	24	57	35	3	15	45	1.62
36661142--36661219	38	2.1	38	97	0	147	37	3	14	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36661146--36661212	21	3.4	21	68	16	70	35	4	13	46	1.63
36661158--36661218	19	3.2	19	67	17	54	37	4	13	44	1.65
36661266--36661319	24	2.2	24	83	0	72	14	18	7	59	1.58
36661286--36661387	41	2.5	41	84	4	127	21	24	5	48	1.72
36668826--36668884	10	6.1	10	86	11	61	50	3	0	45	1.18
36668821--36668881	19	3.2	19	78	0	68	55	3	0	40	1.16
36679667--36679734	9	7.3	9	73	16	50	73	0	1	25	0.92
36679627--36679698	28	2.3	31	86	13	96	63	1	2	31	1.17
36679683--36679712	11	2.6	11	94	5	51	60	0	3	36	1.14
36682168--36682335	30	5.7	30	80	6	137	22	26	11	39	1.88
36682163--36682386	29	7.6	29	79	10	138	20	28	11	39	1.88
36682154--36682386	59	3.9	58	75	10	193	20	27	12	39	1.89
36682155--36682357	89	2.3	89	84	5	259	20	27	12	38	1.89
36682168--36682442	118	2.3	118	84	2	354	22	25	12	40	1.88
36683655--36683764	25	4.4	25	86	4	114	25	22	20	30	1.98
36683659--36683754	50	1.9	50	85	4	131	23	25	19	31	1.98
36683658--36683769	50	2.2	50	80	3	127	24	23	21	31	1.98
36685198--36685240	17	2.5	17	96	0	77	20	25	32	20	1.97
36688008--36688229	50	4.3	50	84	3	246	25	22	29	22	1.99
36688008--36688289	50	5.5	50	80	4	201	27	20	28	23	1.99
36693660--36693727	30	2.3	30	92	2	111	22	2	16	58	1.51
36698200--36698232	18	1.9	18	88	11	52	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36698421--36698492	36	2.0	36	94	0	126	36	22	16	25	1.94
36705879--36706095	39	5.6	39	86	4	287	47	18	2	32	1.61
36707867--36708915	521	2.0	522	97	0	1967	32	22	13	30	1.93
36713022--36713060	19	2.1	19	90	9	62	56	2	5	35	1.35
36713385--36713435	20	2.8	17	80	13	57	19	3	1	74	1.07
36726393--36726455	20	3.1	20	64	28	51	39	11	4	44	1.61
36726987--36727022	15	2.4	15	100	0	72	36	8	11	44	1.70
36730021--36730213	91	2.1	92	92	0	316	45	3	4	46	1.39
36730143--36730203	28	2.2	28	85	5	81	45	0	3	50	1.17
36730061--36730203	44	3.2	43	69	20	121	46	2	3	48	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207