genome.fa.s19.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  136  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41697590--41698222	143	4.6	134	86	9	712	33	8	29	29	1.87
41707753--41707784	11	2.9	11	100	0	64	28	28	9	34	1.88
41709469--41709549	34	2.5	33	86	6	112	11	30	0	58	1.33
41712709--41712746	20	1.9	20	94	0	67	50	0	23	26	1.50
41714524--41714655	51	2.6	51	83	0	147	22	29	12	35	1.90
41723807--41724064	99	2.6	99	89	0	399	48	18	19	13	1.80
41723776--41724064	33	8.8	33	81	1	292	48	18	19	13	1.80
41728003--41728048	24	1.9	24	82	8	58	43	2	2	52	1.25
41729313--41729375	8	7.9	8	75	15	51	22	4	1	71	1.13
41736348--41736388	21	1.9	21	85	5	55	34	0	4	60	1.18
41744663--41744713	21	2.5	21	90	3	77	31	9	29	29	1.89
41744915--41744970	21	2.6	21	78	18	62	16	17	5	60	1.53
41762734--41762799	30	2.2	30	94	0	114	24	27	3	45	1.68
41765673--41765820	43	3.5	42	84	1	188	33	24	17	25	1.96
41771780--41771970	61	3.2	61	72	11	221	43	1	4	50	1.30
41771784--41771967	56	3.1	59	71	20	200	43	1	4	50	1.30
41771761--41772005	120	2.0	120	96	3	449	43	0	4	50	1.29
41772155--41772244	45	2.0	44	89	6	137	35	28	5	30	1.80
41772224--41772256	16	2.1	16	100	0	66	21	36	6	36	1.78
41774047--41774287	7	33.9	7	70	12	80	43	33	0	22	1.57
41774599--41774700	40	2.5	40	82	0	114	29	21	17	31	1.96
41774773--41774859	40	2.2	40	82	0	102	28	21	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41774906--41775094	40	4.7	40	85	0	243	29	23	20	26	1.99
41774586--41775006	155	2.7	155	82	1	531	28	21	19	30	1.97
41782410--41783096	365	1.9	368	89	1	1085	36	12	16	35	1.85
41786862--41786901	13	3.1	13	82	10	55	15	17	15	52	1.75
41792395--41792686	47	6.1	47	95	2	496	32	8	28	29	1.88
41792663--41792710	24	2.0	24	100	0	96	29	16	33	20	1.95
41792616--41792757	71	2.0	71	97	0	266	32	11	29	26	1.91
41792522--41792833	165	1.9	165	92	0	525	32	9	30	27	1.89
41792569--41792782	118	1.8	118	97	0	410	32	9	29	28	1.88
41792687--41792833	47	3.1	47	89	0	213	31	9	31	27	1.88
41794208--41794519	40	7.8	40	87	0	444	26	21	26	25	1.99
41798584--41798903	49	6.7	49	96	2	571	32	8	28	30	1.87
41798880--41798927	24	2.0	24	100	0	96	29	16	33	20	1.95
41798739--41799050	165	1.9	165	92	0	525	32	9	30	27	1.89
41798833--41798974	71	2.0	71	98	0	275	31	11	30	26	1.91
41798786--41798999	118	1.8	118	97	0	410	32	9	29	28	1.89
41798904--41799050	47	3.1	47	90	0	222	31	9	31	26	1.88
41805311--41805404	28	3.4	28	74	9	79	50	15	3	30	1.60
41819054--41819170	59	1.9	59	84	8	155	42	3	3	50	1.36
41821329--41821444	43	2.7	43	86	2	153	40	23	13	22	1.90
41836716--41836757	19	2.2	19	86	0	57	19	33	16	30	1.94
41838373--41838401	12	2.3	13	94	5	51	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41839355--41839404	23	2.2	23	85	7	66	64	12	2	22	1.37
41841365--41841417	25	2.1	25	92	0	88	28	1	11	58	1.43
41841632--41841678	4	11.8	4	100	0	94	51	23	0	25	1.49
41850835--41850888	20	2.7	20	91	0	81	55	1	20	22	1.53
41859350--41859411	30	2.1	30	87	6	90	48	11	8	32	1.68
41862288--41862329	21	2.0	20	82	13	50	50	9	7	33	1.62
41862971--41863015	22	2.0	22	83	8	56	53	0	4	42	1.21
41866061--41866556	27	18.4	27	84	2	550	19	16	21	41	1.90
41876775--41877526	47	15.8	47	95	1	1288	32	8	29	29	1.87
41877645--41877723	37	2.1	37	90	0	122	24	18	31	25	1.98
41884166--41884225	27	2.2	27	82	5	68	71	8	5	15	1.27
41886693--41886817	41	3.0	41	86	5	171	23	30	12	33	1.92
41886747--41886814	21	3.3	21	68	12	59	26	32	10	30	1.90
41888127--41888214	40	2.2	40	91	0	140	25	20	23	30	1.98
41888136--41888262	40	3.2	42	81	11	151	22	21	25	31	1.98
41892754--41892782	12	2.5	12	94	5	51	27	0	17	55	1.42
41894087--41894122	14	2.5	15	90	4	56	66	0	8	25	1.19
41894090--41894122	15	2.2	16	84	15	52	63	0	9	27	1.24
41898358--41898533	85	2.1	85	96	0	325	38	7	26	27	1.84
41900674--41901179	47	10.6	47	92	2	805	33	8	28	29	1.86
41900674--41901179	96	5.3	96	93	0	831	33	8	28	29	1.86
41908450--41908578	33	4.2	28	71	18	78	31	20	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41908454--41908548	33	2.9	33	93	0	154	35	20	21	23	1.96
41908732--41908791	27	2.2	28	85	11	81	38	21	21	18	1.94
41908976--41909218	26	9.3	26	86	3	319	24	16	20	38	1.93
41912140--41912186	24	2.0	24	82	0	58	44	17	10	27	1.81
41920033--41920075	18	2.4	18	88	0	59	13	23	18	44	1.86
41920669--41920707	12	3.2	12	85	0	51	20	23	5	51	1.67
41920906--41921148	50	4.7	51	77	8	192	24	25	20	29	1.99
41924955--41924991	18	2.0	19	85	15	51	43	5	18	32	1.73
41926810--41926842	16	2.0	17	88	5	50	27	3	18	51	1.60
41937060--41937097	20	1.9	20	84	10	51	52	28	0	18	1.45
41938232--41938285	3	18.0	3	92	0	90	66	29	0	3	1.09
41942356--41942477	44	2.8	44	73	12	124	31	25	16	27	1.96
41945772--41946046	139	2.0	139	94	0	487	33	27	13	26	1.93
41950396--41950517	44	2.8	44	72	12	115	30	25	16	27	1.97
41951156--41951188	8	4.0	8	96	4	57	60	15	0	24	1.35
41952050--41952774	359	2.0	359	93	0	1227	32	24	18	23	1.97
41953915--41953999	25	3.4	24	73	15	66	23	21	23	31	1.98
41954425--41954456	16	1.9	17	93	6	57	37	9	9	43	1.69
41970658--41970730	22	3.4	22	74	11	71	38	12	24	24	1.90
41970678--41970749	20	3.5	20	72	7	72	34	13	27	23	1.93
41970642--41970749	42	2.6	42	86	2	146	33	15	24	26	1.95
41973924--41974044	29	4.1	29	82	1	125	36	13	25	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41982385--41982436	20	2.6	19	85	8	68	44	17	11	26	1.83
41984258--41984297	20	2.0	21	95	5	73	47	15	10	27	1.77
41989327--41989373	15	3.1	15	81	0	58	51	0	12	36	1.40
41991102--41991135	17	1.9	18	94	5	61	32	5	2	58	1.37
41991149--41991236	29	3.1	28	79	10	90	59	0	11	29	1.32
41991146--41991222	29	2.8	27	80	11	102	58	0	11	29	1.34
41994703--41994755	27	2.0	27	88	0	79	33	18	26	20	1.96
41995449--41995501	27	2.0	27	88	7	81	30	15	30	24	1.95
41995449--41995521	27	2.7	27	77	8	69	28	17	27	26	1.98
41999414--41999465	27	1.9	27	84	0	68	30	38	13	17	1.88
42000417--42000459	17	2.6	16	82	10	50	65	2	2	30	1.18
42006249--42006295	23	2.0	23	100	0	94	27	17	4	51	1.64
42006255--42006305	23	2.3	22	86	10	68	29	17	3	49	1.65
42009235--42009412	27	6.6	26	80	6	169	26	16	28	28	1.97
42009236--42009391	82	1.9	81	86	3	224	26	16	28	28	1.97
42009232--42009412	82	2.2	81	82	2	220	27	16	28	28	1.97
42009317--42009423	27	3.9	27	81	1	79	26	15	28	28	1.96
42017364--42017541	27	6.6	26	80	6	169	26	16	28	28	1.97
42017365--42017520	82	1.9	81	86	3	224	26	16	28	28	1.97
42017361--42017541	82	2.2	81	82	2	220	27	16	28	28	1.97
42017446--42017552	27	3.9	27	81	1	79	26	15	28	28	1.96
42028505--42028541	18	2.2	18	90	9	60	8	13	0	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42029839--42029905	28	2.4	28	87	5	91	16	14	35	32	1.90
42029877--42030082	103	2.0	103	97	0	385	26	14	31	28	1.95
42031565--42031604	19	2.1	19	90	9	64	35	7	2	55	1.42
42031654--42031807	78	2.0	78	94	2	276	31	3	8	57	1.45
42039047--42039263	38	5.7	38	86	2	274	14	21	29	34	1.93
42046014--42046067	27	2.0	27	100	0	108	48	22	7	22	1.75
42046953--42047040	43	2.0	43	100	0	176	10	27	2	60	1.41
42048227--42048273	24	2.0	24	86	0	67	55	10	12	21	1.67
42050098--42050173	36	2.1	36	95	0	134	13	27	1	57	1.44
42050175--42050213	11	3.5	11	80	19	53	61	2	0	35	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207