genome.fa.s19.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  124  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37685329--37685505	81	2.2	81	87	0	255	26	20	9	43	1.82
37687188--37687236	18	2.6	19	78	18	57	22	2	2	73	1.04
37687187--37687236	22	2.3	22	83	10	66	22	2	2	74	1.03
37693760--37693808	18	2.6	19	78	18	57	22	2	2	73	1.04
37693759--37693808	22	2.3	22	83	10	66	22	2	2	74	1.03
37695702--37695820	50	2.3	52	88	2	170	32	17	12	36	1.88
37699394--37699524	50	2.6	51	83	3	174	35	13	12	38	1.84
37703515--37703564	26	1.9	26	91	0	82	80	14	4	2	0.95
37715663--37715766	32	3.0	32	80	20	136	18	12	25	43	1.85
37721790--37721882	48	1.9	48	86	0	132	16	26	1	55	1.47
37721835--37721899	30	2.2	28	79	15	69	15	24	0	60	1.36
37722874--37722912	12	3.2	12	96	0	69	23	7	0	69	1.14
37727813--37727845	11	3.1	11	86	4	50	27	24	9	39	1.85
37728669--37728738	34	2.1	34	100	0	140	31	8	17	42	1.79
37739819--37739854	18	1.9	18	88	5	54	58	5	25	11	1.54
37743974--37744059	37	2.2	39	76	13	88	72	1	18	8	1.16
37743992--37744021	14	2.1	15	93	6	53	86	0	13	0	0.57
37744013--37744059	18	2.6	18	93	0	76	72	2	19	6	1.17
37743991--37744059	6	11.3	6	72	9	59	75	1	18	4	1.05
37745249--37745286	19	1.9	20	89	10	60	34	15	13	36	1.87
37745464--37745503	20	2.0	21	85	5	55	32	17	15	35	1.91
37745581--37745673	19	5.1	19	68	21	72	32	9	12	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37745559--37745683	54	2.3	54	92	0	205	33	9	14	42	1.78
37748596--37748795	32	6.3	32	81	0	195	37	19	20	23	1.94
37748593--37748795	64	3.2	64	83	1	221	37	19	19	23	1.94
37748596--37748795	96	2.1	95	80	0	220	37	19	20	23	1.94
37748801--37748854	26	2.1	26	85	0	72	37	24	20	18	1.94
37751583--37751635	27	2.0	26	82	14	63	7	24	0	67	1.16
37755526--37755701	96	1.8	96	93	0	307	35	15	15	33	1.90
37765678--37765724	20	2.3	20	85	0	67	29	36	12	21	1.91
37767204--37767236	13	2.6	13	85	4	50	78	6	3	12	1.04
37767258--37767318	25	2.4	26	88	2	88	73	4	14	6	1.20
37768431--37768536	48	2.2	47	85	9	135	59	1	24	14	1.45
37770201--37770247	20	2.3	20	85	0	67	29	36	12	21	1.91
37777702--37777748	20	2.3	20	85	0	67	21	12	36	29	1.91
37779416--37779521	48	2.2	48	81	9	128	14	23	1	60	1.44
37780751--37780782	11	2.8	12	95	4	57	6	3	6	84	0.86
37782177--37782223	20	2.3	20	85	0	67	21	12	36	29	1.91
37787107--37787139	12	2.8	12	90	4	50	42	33	18	6	1.75
37788173--37788225	21	2.5	21	93	0	88	30	37	9	22	1.86
37789907--37789953	17	2.9	16	79	17	60	12	10	0	76	1.02
37789907--37789953	8	5.8	8	83	14	60	12	10	0	76	1.02
37793818--37793849	15	2.0	17	88	11	50	6	12	25	56	1.59
37796656--37796696	20	2.0	20	95	0	73	56	14	12	17	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37798177--37798210	16	2.0	16	88	11	50	29	2	2	64	1.22
37798617--37798703	45	1.9	45	95	0	156	29	32	10	27	1.90
37801900--37801931	15	2.0	17	88	11	50	6	12	25	56	1.59
37804729--37804769	20	2.0	20	95	0	73	56	14	12	17	1.68
37806250--37806283	16	2.0	16	88	11	50	29	2	2	64	1.22
37806690--37806776	45	1.9	45	95	0	156	29	32	10	27	1.90
37808934--37808974	13	3.1	14	75	10	50	12	14	12	60	1.58
37809648--37809704	19	2.7	19	84	13	60	75	7	7	10	1.19
37817980--37818044	30	2.1	32	86	11	91	67	3	1	27	1.14
37818903--37818986	25	3.2	25	73	12	78	48	15	8	27	1.73
37830586--37830623	15	2.5	15	84	12	51	7	10	2	78	1.04
37831113--37831146	15	2.3	15	94	0	59	23	29	14	32	1.94
37838450--37838508	30	2.0	30	83	6	75	28	15	25	30	1.96
37859392--37859439	25	2.0	24	84	8	62	41	12	8	37	1.73
37874222--37874255	13	2.7	13	90	4	52	8	5	5	79	1.05
37878964--37878994	11	2.7	11	95	5	53	77	6	9	6	1.12
37894743--37894805	21	3.0	21	85	2	81	31	3	31	33	1.74
37907396--37907465	9	7.4	9	76	17	63	22	0	21	55	1.43
37907397--37907429	11	3.2	11	91	8	52	18	0	18	63	1.31
37907559--37907616	21	2.6	23	76	23	77	43	8	20	27	1.81
37913389--37913423	17	2.1	17	89	10	54	71	2	20	5	1.19
37913467--37913508	13	3.2	13	77	12	50	64	2	19	14	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37927266--37927311	13	3.5	13	88	8	67	67	0	19	13	1.23
37927275--37927334	13	4.9	12	74	15	52	60	1	23	15	1.44
37938903--37938967	20	3.3	19	73	16	51	38	16	21	23	1.93
37940740--37940802	33	1.9	33	84	12	85	12	25	6	55	1.60
37941689--37941726	10	3.7	10	92	3	58	5	7	2	84	0.86
37941681--37941741	22	2.7	22	80	10	61	6	14	3	75	1.13
37945202--37945264	33	1.9	33	84	12	85	12	25	6	55	1.60
37945261--37945314	28	1.9	29	88	7	85	9	20	1	68	1.27
37945261--37945321	29	2.2	27	85	5	77	11	19	3	65	1.38
37946149--37946186	10	3.7	10	89	3	58	2	7	2	86	0.74
37946141--37946202	20	2.8	21	83	16	72	4	14	3	77	1.06
37948338--37948384	20	2.3	20	85	0	67	29	36	12	21	1.91
37951819--37951891	29	2.5	29	90	0	119	46	13	9	30	1.75
37955338--37955378	16	2.6	16	88	0	64	19	9	4	65	1.40
37958359--37959209	430	2.0	431	96	0	1560	19	20	16	44	1.87
37963764--37963941	27	6.6	27	81	3	187	26	14	28	30	1.95
37963764--37963941	54	3.3	54	84	3	223	26	14	28	30	1.95
37971772--37971949	27	6.6	27	81	3	187	26	14	28	30	1.95
37971772--37971949	54	3.3	54	84	3	223	26	14	28	30	1.95
37974764--37974857	46	2.0	46	93	4	163	24	18	22	35	1.96
37994103--37994132	10	2.9	10	95	5	51	80	6	3	10	1.01
37994208--37994244	12	3.2	12	92	7	60	72	8	0	18	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37994237--37994303	13	4.8	13	72	22	55	77	2	13	5	1.07
37995309--37995414	48	2.2	47	85	9	135	59	1	24	14	1.45
37998617--37998646	11	2.7	11	100	0	60	80	6	0	13	0.91
37999578--37999606	15	2.0	15	93	6	51	75	0	17	6	1.01
38010349--38010381	12	2.8	12	100	0	66	81	6	0	12	0.85
38011410--38011515	48	2.2	47	85	9	135	59	1	24	14	1.45
38018589--38018633	22	2.0	24	82	8	58	26	15	13	44	1.83
38020101--38020178	36	2.1	37	90	2	122	25	30	19	24	1.98
38020297--38020581	47	6.1	47	94	0	482	28	30	9	31	1.89
38023966--38024146	40	4.6	39	79	9	172	24	27	22	25	2.00
38023953--38024108	78	2.0	80	82	5	192	25	27	20	26	1.99
38024516--38024661	43	3.4	43	100	0	292	26	35	15	22	1.94
38026510--38026587	37	2.1	37	88	2	113	25	32	16	25	1.96
38026708--38027030	48	7.1	47	82	11	404	28	29	8	32	1.88
38026759--38027030	95	3.0	91	86	10	389	30	28	8	33	1.87
38108923--38108969	20	2.3	20	77	0	58	29	34	14	21	1.93
38111672--38111724	23	2.4	22	76	20	56	9	18	1	69	1.25
38127138--38127169	12	2.6	12	95	5	55	25	6	3	65	1.31
38130912--38130946	11	3.4	11	88	11	56	22	0	0	77	0.78
38139731--38139778	25	1.9	25	83	8	62	18	16	14	50	1.79
38139943--38139976	13	2.7	13	90	4	52	8	5	5	79	1.05
38150196--38150229	13	2.7	13	86	4	52	14	2	0	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38150196--38150236	14	3.2	13	86	10	50	17	4	2	75	1.08
38155788--38155849	10	5.9	10	74	10	52	33	32	3	30	1.74
38155788--38155850	21	3.0	21	88	2	90	33	33	3	30	1.74
38160434--38160509	20	3.8	20	82	6	93	25	25	17	32	1.96
38160439--38160509	10	7.2	10	70	24	53	25	26	16	30	1.97
38162388--38162438	26	2.0	27	88	7	79	74	1	11	11	1.15
38164968--38165041	20	3.8	20	82	5	89	27	24	17	31	1.97
38169285--38169360	20	3.8	20	86	5	102	25	26	17	31	1.97
38169290--38169360	10	7.2	10	72	24	62	25	28	16	29	1.97
38173070--38173120	25	2.0	25	85	7	68	50	13	15	19	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207