genome.fa.s19.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  195  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58727843--58727908	27	2.4	27	84	2	87	30	6	25	37	1.80
58728599--58728650	21	2.5	21	80	0	59	42	5	15	36	1.71
58734985--58735024	19	2.1	19	86	9	55	55	0	15	30	1.41
58738751--58738775	13	1.9	13	100	0	50	16	0	12	72	1.13
58739932--58740037	50	2.2	48	81	3	122	44	14	7	33	1.73
58748185--58748424	39	6.1	39	89	4	338	47	20	2	30	1.62
58748185--58748424	121	2.0	117	90	3	372	47	20	2	30	1.62
58756543--58756664	23	5.3	23	85	3	174	32	27	18	21	1.97
58756543--58756662	46	2.6	46	93	0	195	32	27	19	20	1.97
58756833--58756871	14	2.8	14	96	0	69	30	17	0	51	1.46
58760456--58760539	30	2.8	30	77	15	93	65	4	2	27	1.25
58760465--58760527	27	2.2	28	83	5	74	69	3	1	25	1.12
58761404--58761451	24	2.0	24	95	0	87	37	6	0	56	1.25
58761520--58761594	27	2.8	27	90	8	109	24	29	32	14	1.95
58761748--58761786	19	2.0	21	85	10	55	23	0	10	66	1.22
58761832--58761866	3	11.3	3	87	6	52	31	0	5	62	1.18
58761865--58761908	3	14.7	3	100	0	88	0	0	31	68	0.90
58762697--58762734	18	2.1	18	95	0	67	34	7	47	10	1.67
58767124--58767150	13	2.1	13	100	0	54	70	0	14	14	1.17
58768165--58768345	5	34.8	5	70	17	70	1	28	0	70	0.95
58768213--58768384	4	42.8	4	71	21	112	1	27	0	70	0.96
58768202--58768344	33	4.4	33	71	17	88	1	27	0	70	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58768233--58768346	49	2.4	48	84	8	142	1	27	0	71	0.96
58768204--58768393	39	4.8	42	77	14	197	1	28	0	69	0.98
58768426--58768495	27	2.6	27	93	4	115	17	28	28	25	1.97
58768426--58768504	27	2.9	27	85	7	106	16	30	27	25	1.97
58768570--58768615	23	2.0	23	95	0	83	54	0	8	36	1.32
58768570--58768635	23	2.6	24	81	16	71	50	1	10	37	1.47
58769617--58769651	4	8.8	4	93	0	61	25	2	48	22	1.64
58770878--58770902	13	1.9	13	100	0	50	32	0	0	68	0.90
58772857--58772963	21	5.0	21	78	16	96	37	0	0	60	1.09
58772868--58772963	41	2.3	40	77	19	99	38	1	0	60	1.04
58777304--58777342	20	2.0	20	100	0	78	41	5	0	53	1.23
58779532--58779584	17	3.2	17	75	2	54	60	1	0	37	1.08
58779491--58779558	23	3.0	23	78	6	66	60	2	1	35	1.21
58785797--58785904	15	7.2	15	67	12	78	44	7	22	25	1.79
58785791--58785914	30	4.1	30	93	1	203	43	6	24	25	1.78
58790483--58790590	15	7.2	15	65	12	69	45	7	21	25	1.78
58790479--58790590	30	3.7	30	90	4	172	46	7	21	25	1.76
58790479--58790599	60	2.0	60	91	3	199	45	6	22	25	1.76
58793341--58793365	13	1.9	13	100	0	50	32	0	0	68	0.90
58795322--58795550	21	10.3	22	69	17	118	40	1	1	56	1.18
58795487--58795568	22	3.6	23	82	9	96	42	0	1	56	1.07
58795477--58795546	22	3.2	22	82	13	90	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58798704--58798735	2	16.5	2	93	6	57	46	0	0	53	1.00
58799376--58799475	43	2.3	43	84	3	139	35	30	16	19	1.93
58805882--58805926	19	2.2	20	92	7	74	24	17	6	51	1.70
58806310--58806347	9	4.2	9	96	0	58	21	10	26	42	1.85
58806626--58806655	16	1.9	16	93	6	53	50	0	0	50	1.00
58806692--58806750	13	4.2	13	87	12	82	61	1	0	37	1.07
58806684--58806750	28	2.4	28	81	16	86	56	2	0	40	1.14
58806733--58806771	19	2.0	20	95	5	71	58	0	0	41	0.98
58806684--58806750	15	4.8	14	78	15	59	56	2	0	40	1.14
58806734--58806802	19	3.2	21	80	15	63	55	1	1	42	1.18
58806961--58807006	24	2.0	23	87	8	67	76	4	4	15	1.11
58809352--58810018	114	5.9	111	79	6	581	32	18	21	27	1.97
58809352--58810249	227	4.0	226	80	7	843	31	18	22	27	1.97
58809812--58810215	208	1.9	209	88	2	616	32	18	21	27	1.96
58810468--58810538	14	5.0	14	69	16	56	22	1	35	40	1.63
58811680--58811726	22	2.1	22	96	0	85	27	8	23	40	1.83
58812033--58812232	71	2.8	71	96	2	368	26	5	18	50	1.67
58812368--58812397	14	2.1	14	100	0	60	26	13	6	53	1.64
58813076--58813154	29	2.6	31	90	4	117	49	1	0	49	1.09
58813423--58813649	9	26.9	9	69	14	99	44	22	3	29	1.70
58813423--58813649	25	9.0	25	69	5	152	44	22	3	29	1.70
58813515--58813546	16	2.0	16	93	0	55	53	18	6	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58813423--58813649	52	4.5	50	84	4	242	44	22	3	29	1.70
58813573--58813640	34	2.0	34	82	0	82	42	25	2	29	1.69
58817354--58817424	21	3.4	21	84	0	88	35	18	43	2	1.65
58817748--58817868	43	2.9	41	85	3	152	35	19	19	25	1.95
58817750--58818080	42	7.9	41	87	3	365	27	21	20	30	1.98
58817837--58818080	83	2.9	83	91	1	382	23	22	21	31	1.98
58827012--58827058	17	2.8	17	78	15	53	61	8	0	29	1.25
58827272--58827356	3	28.3	3	73	17	54	67	1	3	28	1.15
58827272--58827353	24	3.4	23	75	15	76	67	1	3	28	1.15
58827686--58827758	23	3.2	23	76	16	71	60	28	1	9	1.37
58827684--58827749	21	3.0	21	82	8	62	57	30	1	10	1.42
58828244--58828395	40	3.8	40	80	3	187	26	20	21	31	1.98
58828228--58828396	82	2.0	83	88	1	250	26	18	21	34	1.96
58828583--58828781	45	4.4	45	66	13	111	28	24	19	27	1.99
58828558--58828862	136	2.3	135	94	1	522	29	22	20	26	1.99
58828798--58829375	44	13.1	45	73	6	421	29	26	17	26	1.97
58828800--58829380	132	4.4	132	92	0	928	29	26	17	27	1.97
58839427--58839499	20	3.4	21	78	12	60	53	1	1	43	1.17
58839450--58839498	25	2.1	23	85	11	64	57	2	2	38	1.22
58839425--58839473	20	2.5	20	83	6	64	57	0	0	42	0.99
58841065--58841101	16	2.4	16	90	4	58	8	32	5	54	1.53
58844203--58844236	16	2.1	16	89	10	52	70	0	2	26	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58844392--58844448	27	2.1	28	81	12	66	56	5	17	21	1.60
58845187--58845249	14	4.5	13	75	15	54	60	0	3	36	1.13
58846316--58846441	43	2.9	43	79	11	125	28	23	17	30	1.97
58848132--58848292	28	6.0	27	74	12	109	31	24	17	26	1.97
58849751--58850200	1	450.0	1	95	0	801	0	0	1	97	0.20
58887420--58887497	26	2.9	27	75	14	79	35	25	15	23	1.94
58887430--58887500	26	2.6	27	78	10	83	35	28	14	22	1.93
58889687--58889800	42	2.5	44	76	20	112	30	20	15	33	1.94
58891947--58892138	40	4.8	40	92	1	226	27	27	21	23	1.99
58891918--58892137	80	2.8	80	81	4	248	28	27	20	23	1.99
58900132--58900323	40	4.8	40	92	1	226	27	27	21	23	1.99
58900103--58900322	80	2.8	80	81	4	248	28	27	20	23	1.99
58908590--58908627	12	3.2	12	85	10	51	55	2	0	42	1.14
58916314--58916395	9	8.7	9	78	12	60	29	1	0	69	0.96
58916313--58916399	10	9.0	10	75	20	87	31	1	0	67	0.98
58916323--58916434	40	2.7	40	75	22	90	31	1	0	66	1.02
58916298--58916429	50	2.5	50	87	8	176	30	2	0	67	1.03
58922859--58922913	25	2.3	24	79	11	60	54	7	1	36	1.39
58927105--58927157	25	2.1	25	82	6	63	45	32	7	15	1.74
58932655--58932971	50	6.3	51	82	10	382	29	23	14	33	1.94
58932657--58932862	94	2.2	94	95	0	367	28	23	15	32	1.95
58932751--58932976	58	4.2	57	81	12	253	29	23	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58944409--58944456	24	2.0	24	100	0	96	37	25	8	29	1.85
58945809--58946162	166	2.1	165	82	1	422	44	20	11	24	1.84
58948646--58948673	3	9.3	3	100	0	56	67	0	0	32	0.91
58950337--58950399	24	2.5	26	76	10	67	50	1	1	46	1.20
58950350--58950399	25	2.0	24	84	11	64	54	0	0	46	1.00
58950354--58950406	27	2.0	25	82	7	61	54	0	0	45	0.99
58950369--58950410	17	2.6	16	77	7	50	57	0	0	42	0.99
58950571--58950643	36	2.0	36	91	0	119	32	10	4	52	1.56
58952932--58952968	19	1.9	19	88	0	56	21	24	32	21	1.98
58957791--58957955	85	2.0	84	82	8	201	27	21	21	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207