genome.fa.s19.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  90  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26440375--26440427	28	2.0	28	85	7	74	30	16	3	49	1.64
26442889--26442930	20	2.3	19	88	12	61	26	0	4	69	1.08
26453794--26454330	44	12.2	44	90	0	779	28	21	24	24	1.99
26458864--26458955	47	1.9	48	82	4	114	25	14	19	41	1.89
26462824--26462867	19	2.4	19	85	11	56	29	2	0	68	1.02
26471332--26471373	20	2.1	20	100	0	84	35	23	7	33	1.82
26472363--26472402	21	1.9	21	89	0	62	27	37	22	12	1.90
26474517--26474555	15	2.6	15	83	0	51	35	2	0	61	1.10
26474614--26474653	20	2.0	20	85	5	53	42	0	7	50	1.30
26475388--26475418	15	2.1	15	93	0	53	0	12	3	83	0.75
26476038--26476071	12	2.8	12	90	0	50	32	2	5	58	1.37
26476038--26476071	15	2.3	15	89	0	50	32	2	5	58	1.37
26476120--26476174	20	2.5	24	77	22	66	30	5	5	58	1.44
26480954--26480987	14	2.4	14	90	0	50	29	11	29	29	1.92
26481055--26481096	19	2.3	18	87	4	57	80	9	9	0	0.89
26481052--26481104	16	3.3	15	82	12	61	79	11	9	0	0.94
26482888--26483072	88	2.1	88	84	4	239	31	19	20	28	1.97
26483190--26483552	44	8.2	44	77	6	324	27	19	26	26	1.99
26483063--26483644	220	2.6	220	90	0	905	28	19	25	26	1.99
26485237--26485285	3	16.3	3	80	0	53	32	6	4	57	1.42
26485334--26485388	20	2.5	24	77	22	66	30	5	5	58	1.44
26492727--26492782	20	2.8	20	80	0	76	33	8	5	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26499856--26499892	19	2.0	18	94	5	65	56	5	0	37	1.22
26506677--26506725	4	12.2	4	100	0	98	24	0	24	51	1.49
26509427--26509486	29	2.1	29	93	0	102	38	0	18	43	1.50
26515068--26515184	39	3.0	39	83	5	137	28	28	11	31	1.92
26518494--26518529	18	2.0	18	100	0	72	16	22	11	50	1.77
26522397--26522446	3	16.7	3	87	0	73	60	0	4	36	1.16
26529366--26529401	17	2.1	17	100	0	72	30	11	22	36	1.89
26529807--26529855	24	2.0	24	96	0	89	42	6	20	30	1.76
26533372--26533604	40	5.8	40	87	5	269	26	26	20	26	1.99
26541346--26541563	40	5.7	40	85	10	251	26	27	21	24	1.99
26549198--26549417	40	5.7	40	87	6	276	26	27	21	25	1.99
26549165--26549366	40	5.2	39	85	8	252	26	26	20	26	1.99
26549165--26549366	79	2.6	79	87	6	270	26	26	20	26	1.99
26549198--26549417	77	2.8	79	85	6	281	26	27	21	25	1.99
26555617--26555655	18	2.2	18	95	0	69	38	12	10	38	1.78
26568214--26568464	27	9.3	27	84	1	299	44	17	19	18	1.87
26568214--26568464	81	3.1	81	87	1	342	44	17	19	18	1.87
26568816--26568870	28	2.0	28	88	0	83	27	30	16	25	1.96
26570440--26570486	21	2.4	19	82	10	58	57	0	2	40	1.11
26570454--26570546	27	3.5	27	85	7	84	51	1	0	47	1.07
26570536--26570578	22	1.9	23	90	4	70	37	0	2	60	1.10
26572814--26573142	164	2.0	164	98	0	631	37	12	25	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26585004--26585044	20	1.9	23	85	14	61	48	17	9	24	1.76
26587109--26587165	26	2.2	26	93	0	96	24	22	19	33	1.97
26588737--26588828	28	2.9	31	75	21	93	26	25	25	23	2.00
26588758--26588817	28	2.2	28	93	3	104	26	25	25	23	2.00
26589215--26589349	27	5.0	27	86	1	171	20	17	20	41	1.90
26589213--26589333	55	2.2	54	85	1	161	21	17	19	41	1.90
26603247--26603292	6	7.5	6	90	4	56	15	23	0	60	1.34
26603247--26603291	18	2.4	19	88	3	65	15	24	0	60	1.36
26609167--26609220	23	2.3	23	90	6	83	40	20	7	31	1.80
26614001--26614041	20	2.0	21	85	4	57	51	4	17	26	1.65
26619106--26619219	56	2.0	56	87	0	165	33	10	21	35	1.87
26619716--26619759	3	14.7	3	100	0	88	68	0	0	31	0.90
26619866--26620013	59	2.6	58	86	7	203	40	20	8	31	1.81
26622152--26622188	18	2.1	18	100	0	74	40	16	5	37	1.71
26635692--26635722	9	3.4	9	90	0	53	38	22	12	25	1.90
26637170--26637196	10	2.7	10	100	0	54	37	0	18	44	1.50
26641083--26641112	15	2.1	14	93	6	51	40	13	26	20	1.89
26643010--26643047	17	2.1	19	90	9	62	55	0	0	44	0.99
26643012--26643061	20	2.3	20	83	16	57	56	0	0	44	0.99
26647805--26647860	20	2.8	20	84	10	87	50	0	28	21	1.49
26651662--26651691	16	1.9	16	93	6	53	50	13	0	36	1.42
26652763--26652857	25	3.8	25	85	2	120	30	23	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26660339--26660387	20	2.7	18	77	22	57	51	4	2	42	1.32
26665279--26665427	41	3.7	40	85	11	196	26	22	28	22	1.99
26672299--26672433	41	3.3	40	82	11	175	28	21	28	22	1.99
26674825--26674922	41	2.4	42	84	1	126	29	23	24	22	1.99
26674867--26675124	137	1.9	137	84	3	349	33	27	19	19	1.96
26681942--26682003	27	2.3	27	88	5	90	40	19	20	19	1.92
26681942--26682027	27	3.2	28	79	11	83	39	19	20	19	1.93
26687890--26687954	28	2.3	28	86	0	85	33	23	18	24	1.96
26688286--26688364	27	3.0	26	83	9	88	24	17	20	37	1.93
26688320--26688541	27	8.2	27	90	1	320	18	17	23	39	1.92
26701213--26701415	110	1.8	109	83	6	266	42	17	8	31	1.80
26705890--26705919	15	1.9	16	93	6	53	40	6	23	30	1.80
26709327--26709388	31	2.0	31	100	0	124	32	9	16	41	1.80
26718695--26718849	43	3.6	44	86	4	201	33	27	15	23	1.95
26718973--26719173	31	6.5	30	84	4	224	44	17	7	29	1.77
26718980--26719173	62	3.1	62	84	2	257	44	17	7	29	1.77
26718991--26719194	62	3.3	62	79	10	213	46	16	7	29	1.74
26718991--26719182	93	2.1	92	87	2	267	45	17	7	29	1.76
26725245--26725392	43	3.4	43	88	0	206	31	25	18	25	1.98
26725510--26725704	31	6.4	31	78	5	200	43	17	7	31	1.77
26725510--26725736	92	2.5	92	81	5	228	43	16	7	32	1.76
26725510--26725736	62	3.7	63	80	5	225	43	16	7	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26734980--26735027	19	2.5	20	86	6	71	60	2	2	35	1.20
26735105--26735173	36	1.9	35	82	8	86	57	4	7	30	1.45
26745556--26745809	22	11.9	21	73	15	141	17	0	30	51	1.49
26745578--26745610	16	2.0	17	88	5	50	15	0	30	54	1.41
26745595--26745806	7	29.4	7	63	23	50	16	0	32	50	1.49
26745595--26745718	29	4.6	28	72	18	109	16	0	33	50	1.45
26745629--26745862	44	5.2	44	77	10	163	18	1	30	49	1.58
26745663--26745755	15	6.3	15	71	19	63	18	0	30	51	1.46
26745702--26745774	15	4.9	16	72	14	66	19	0	30	50	1.48
26745679--26745862	22	8.5	22	76	3	167	19	2	29	48	1.60
26746448--26746485	18	2.1	18	90	0	58	42	7	28	21	1.81
26748388--26748439	23	2.3	23	83	12	72	46	0	28	25	1.53
26748391--26748436	11	4.2	11	86	8	67	45	0	30	23	1.53
26748751--26748806	11	5.0	11	75	16	53	44	0	30	25	1.54
26748750--26748805	22	2.5	23	88	8	80	42	0	32	25	1.55
26753045--26753070	3	8.7	3	100	0	52	69	0	0	30	0.89
26753149--26753200	10	5.0	10	81	6	59	28	0	1	69	0.99
26757624--26758305	44	15.7	43	71	12	330	28	23	19	28	1.99
26757624--26758309	217	3.2	217	93	0	1165	28	24	19	27	1.99
26759113--26759163	24	2.1	24	85	7	68	60	9	11	17	1.57
26770682--26770733	21	2.6	19	78	9	50	67	3	1	26	1.18
26772398--26772438	21	2.0	21	85	0	55	51	0	4	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26774294--26774322	14	2.0	15	93	6	51	48	0	0	51	1.00
26774872--26774901	12	2.5	12	100	0	60	53	16	6	23	1.66
26788990--26789289	152	2.0	152	99	0	591	45	11	6	37	1.66
26789246--26789270	13	1.9	13	100	0	50	48	0	8	44	1.32
26789418--26789462	23	2.0	23	86	0	63	42	8	0	48	1.34
26789463--26789499	15	2.4	16	82	13	51	43	5	0	51	1.24
26791730--26791817	35	2.5	36	79	5	90	28	19	23	28	1.98
26792251--26792404	28	5.5	28	85	3	184	31	18	19	30	1.96
26792242--26792404	84	1.9	84	85	2	220	31	19	19	29	1.96
26794596--26794629	13	2.6	13	100	0	68	41	32	11	14	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207