genome.fa.s19.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  168  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51857429--51857473	22	2.0	24	91	8	76	48	4	13	33	1.62
51870904--51870954	19	2.7	19	90	0	84	41	15	9	33	1.80
51872977--51873006	11	2.7	11	94	0	51	86	0	10	3	0.67
51875182--51875300	42	2.8	43	82	3	134	26	27	24	21	1.99
51877363--51877418	24	2.4	23	83	13	71	73	3	0	23	0.99
51877343--51877418	40	1.9	39	86	2	107	68	5	1	25	1.18
51879421--51879580	87	1.8	87	90	4	259	27	10	9	52	1.66
51879655--51879865	103	2.0	104	83	6	266	27	11	11	49	1.73
51879496--51879982	256	1.9	256	86	4	705	27	13	12	46	1.79
51880551--51880613	7	8.9	7	78	3	54	33	46	1	19	1.59
51880553--51880592	21	1.9	21	90	10	64	35	40	0	25	1.56
51880583--51880616	15	2.3	15	94	0	59	35	52	2	8	1.47
51880636--51880677	14	2.9	14	82	6	57	35	35	0	28	1.58
51880632--51880678	15	3.3	15	82	8	62	40	31	0	27	1.57
51881226--51881380	73	2.1	73	85	7	217	25	25	23	25	2.00
51881280--51881720	114	3.9	113	89	2	652	25	25	22	26	2.00
51881283--51881720	227	1.9	227	88	2	666	25	25	22	26	2.00
51881621--51881764	72	2.0	72	86	0	198	22	23	25	28	1.99
51916069--51916123	24	2.2	26	81	12	71	45	0	1	52	1.11
51916261--51916355	45	2.1	45	88	1	138	32	27	5	34	1.79
51916336--51916387	16	3.2	16	94	0	86	34	36	0	28	1.58
51921403--51921436	12	2.8	12	90	0	50	41	26	11	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51923860--51923901	18	2.3	18	87	0	57	28	14	26	30	1.95
51924603--51924765	49	3.3	49	85	3	211	33	23	12	30	1.92
51925947--51926576	134	4.7	134	81	2	687	33	17	12	36	1.88
51926659--51926946	134	2.1	134	81	3	339	33	16	11	38	1.84
51926698--51927152	243	1.9	243	82	4	578	31	16	11	39	1.85
51927105--51927208	54	1.9	54	98	0	199	26	25	8	39	1.84
51928959--51929155	71	2.8	71	83	6	204	25	17	26	30	1.97
51932727--51932756	15	2.0	15	93	0	51	56	23	6	13	1.60
51950616--51950700	36	2.4	36	82	7	95	31	22	11	34	1.90
51950575--51951119	133	4.1	133	80	4	558	33	19	10	36	1.86
51950575--51951119	267	2.0	267	82	2	666	33	19	10	36	1.86
51951031--51951217	98	1.9	98	81	2	223	29	19	10	40	1.84
51951144--51951398	134	1.9	134	83	1	332	32	17	12	38	1.87
51957190--51957247	27	2.2	27	84	9	75	34	0	1	63	1.04
51964678--51964712	18	1.9	18	88	0	52	42	17	17	22	1.88
51974398--51974428	6	5.3	6	96	3	55	0	0	12	87	0.55
51985068--51985373	153	2.0	153	94	1	533	29	6	32	32	1.83
51985955--51986262	27	11.5	27	82	1	325	34	18	22	24	1.96
51986306--51986364	24	2.5	24	86	5	84	20	10	25	44	1.83
51986536--51986866	32	10.4	32	73	9	187	22	20	19	38	1.94
51986536--51986836	64	4.7	64	82	4	277	21	20	19	38	1.94
51986536--51986834	96	3.1	96	78	8	259	22	20	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51988705--51988754	23	2.2	23	100	0	100	52	12	14	22	1.74
51995489--51995523	17	2.1	17	94	0	61	42	25	11	20	1.85
51999417--51999463	24	2.0	24	91	0	76	36	2	6	55	1.37
52001645--52002003	44	8.2	44	87	3	304	25	23	20	30	1.98
52001645--52002003	88	4.1	88	85	4	456	25	23	20	30	1.98
52001689--52002003	132	2.4	132	87	1	479	26	24	19	29	1.99
52003087--52003175	42	2.1	42	91	0	142	24	34	13	26	1.93
52022661--52022697	18	2.0	19	89	5	58	54	2	5	37	1.38
52030763--52030805	20	2.1	20	86	4	59	72	4	11	11	1.27
52031897--52031925	14	2.0	15	93	6	51	13	10	0	75	1.04
52035517--52035551	15	2.4	15	90	4	54	31	0	5	62	1.18
52042432--52042506	19	3.8	19	89	6	123	36	10	17	36	1.84
52043070--52043146	29	2.8	27	82	9	84	37	2	2	57	1.27
52043127--52043170	23	2.0	22	90	4	70	31	4	2	61	1.28
52043135--52043187	25	2.1	25	82	6	63	32	7	3	56	1.45
52047409--52047681	36	7.0	36	80	15	303	36	13	20	28	1.91
52047491--52047727	118	2.0	118	94	0	420	36	14	20	29	1.92
52047601--52047666	21	3.5	20	63	25	52	34	12	19	33	1.89
52047373--52047751	82	4.6	82	88	9	528	35	14	20	29	1.92
52052577--52053075	88	5.7	88	90	0	746	28	27	23	21	1.99
52053929--52054003	19	3.8	19	89	6	123	36	10	17	36	1.84
52063022--52063212	41	4.7	41	83	1	224	23	28	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52063022--52063216	82	2.4	81	84	4	248	23	28	14	34	1.93
52064726--52064766	21	2.0	21	95	4	75	21	4	0	73	1.02
52066676--52066742	10	7.4	9	74	17	59	34	1	1	62	1.13
52077461--52077512	26	2.0	26	100	0	104	26	23	23	26	2.00
52083222--52083262	21	2.0	21	85	9	57	29	26	0	43	1.55
52085694--52085743	26	2.0	25	84	4	64	6	24	0	70	1.10
52085772--52085835	7	8.6	7	77	16	58	53	0	1	45	1.10
52085769--52085832	8	8.4	8	78	13	64	51	0	1	46	1.10
52091905--52091931	9	3.0	9	100	0	54	66	11	11	11	1.45
52104351--52104460	44	2.5	44	87	0	157	35	24	19	20	1.96
52105461--52105493	17	2.0	17	88	5	50	33	6	0	60	1.21
52111380--52111432	27	2.0	27	81	7	63	28	5	20	45	1.74
52119097--52119154	28	2.1	28	86	0	80	56	10	5	27	1.54
52120156--52120203	18	2.7	18	81	15	55	75	4	0	20	0.97
52121080--52121140	30	2.0	30	96	0	113	29	13	16	40	1.86
52122352--52122415	26	2.4	28	79	7	71	26	15	32	25	1.95
52131293--52131331	17	2.3	17	86	8	53	46	5	10	38	1.60
52143607--52143655	26	1.9	26	83	4	64	46	10	6	36	1.63
52156898--52157069	75	2.3	75	82	1	211	36	20	17	25	1.94
52159048--52159107	25	2.4	26	86	8	88	21	31	18	28	1.97
52160457--52160496	21	1.9	21	89	0	62	25	10	17	47	1.78
52173563--52173596	6	5.5	6	86	6	50	79	0	2	17	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52175847--52175951	45	2.3	45	93	3	176	16	23	19	40	1.90
52175847--52176003	45	3.5	43	81	6	154	17	24	17	40	1.91
52179306--52179405	39	2.6	38	83	1	128	47	8	7	38	1.60
52180422--52180602	90	2.0	90	94	0	317	38	12	17	32	1.87
52184114--52184157	21	2.1	21	100	0	88	38	9	13	38	1.77
52184113--52184168	21	2.8	19	87	10	85	37	8	16	37	1.80
52184126--52184191	23	3.0	23	82	12	77	37	6	16	39	1.74
52184157--52184201	23	2.0	23	86	4	65	33	4	15	46	1.66
52184367--52184405	19	2.0	21	85	10	55	15	10	5	69	1.34
52184629--52184671	3	14.3	3	80	9	52	30	0	2	67	1.03
52184617--52184670	15	3.4	15	75	12	54	29	0	3	66	1.09
52184613--52184671	12	5.2	12	75	19	56	28	0	3	67	1.06
52184630--52184672	21	2.1	20	91	4	68	32	0	2	65	1.06
52184897--52184928	17	1.9	16	93	6	55	28	0	6	65	1.16
52185425--52185466	19	2.2	20	86	4	59	28	7	14	50	1.69
52194757--52194838	40	2.1	39	90	2	128	43	26	18	10	1.83
52195899--52195932	18	1.9	18	88	5	52	38	14	0	47	1.45
52196655--52196734	33	2.4	34	81	6	92	11	21	20	47	1.80
52196683--52196849	33	5.1	33	75	1	138	17	20	14	47	1.83
52196683--52196848	65	2.5	66	80	3	174	18	20	14	46	1.83
52199370--52199647	139	2.0	138	95	1	495	32	25	7	34	1.84
52202659--52202716	22	2.6	22	81	7	64	41	17	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52205715--52205758	22	2.0	23	86	4	63	52	2	2	43	1.26
52215936--52215992	30	1.9	30	88	0	87	26	21	31	21	1.98
52217019--52217072	6	8.7	6	82	12	56	79	0	18	1	0.82
52217020--52217072	18	2.9	18	85	2	70	79	0	18	1	0.83
52217026--52217079	25	2.2	25	86	3	74	79	0	14	5	0.90
52218096--52218128	17	1.9	17	93	0	57	36	12	24	27	1.91
52221601--52221691	44	2.0	45	93	2	157	31	14	16	37	1.89
52223774--52224190	46	9.6	45	84	11	516	33	14	22	29	1.93
52223902--52224054	36	4.0	36	77	17	155	36	14	18	30	1.91
52223856--52224190	82	4.0	82	87	6	453	34	15	21	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207