genome.fa.s19.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  52  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15261358--15261396	21	1.9	21	84	5	53	41	0	2	56	1.13
15263167--15263205	19	2.1	18	85	4	51	58	0	7	33	1.26
15265739--15265917	11	15.3	12	66	23	55	53	3	2	40	1.32
15265823--15265919	17	5.7	17	69	24	62	54	5	1	39	1.29
15265862--15265933	17	4.4	16	77	18	69	55	4	0	40	1.19
15265781--15265936	68	2.2	70	74	12	153	51	5	1	41	1.37
15270173--15270356	97	1.9	97	90	2	298	45	22	9	22	1.80
15286946--15286983	13	2.9	13	88	7	51	76	5	13	5	1.13
15287684--15288160	96	5.0	96	87	4	637	22	22	24	30	1.99
15292075--15292155	40	2.0	40	100	0	162	25	17	17	39	1.91
15299958--15300021	15	4.1	15	76	11	67	64	7	3	25	1.36
15300744--15300768	13	1.9	13	100	0	50	80	8	8	4	1.03
15303256--15303316	30	2.0	30	83	3	77	44	0	36	19	1.51
15303455--15303495	21	2.0	21	85	9	57	43	0	34	21	1.53
15303533--15303578	9	5.1	9	86	0	65	32	13	10	43	1.78
15303632--15303662	9	3.4	9	90	0	53	38	22	12	25	1.90
15307181--15307255	27	2.8	27	81	0	96	46	18	14	20	1.84
15310668--15310745	37	2.1	38	95	4	142	34	8	25	30	1.87
15311453--15311582	64	2.0	65	92	1	217	26	30	18	23	1.98
15316158--15316186	6	4.8	6	100	0	58	17	17	48	17	1.82
15329605--15329651	15	3.2	15	71	17	53	34	8	4	53	1.51
15331794--15331823	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15334514--15334554	17	2.5	16	80	7	55	43	12	7	36	1.70
15337659--15337688	15	1.9	16	93	6	53	33	0	33	33	1.58
15339489--15339556	20	3.5	20	78	11	77	4	16	20	58	1.54
15339496--15339545	24	2.0	25	84	3	66	4	18	20	58	1.55
15340869--15340903	15	2.4	15	90	4	54	25	0	0	74	0.82
15343646--15343692	18	2.5	19	82	3	60	40	2	21	36	1.65
15351592--15351650	5	11.8	5	81	0	73	3	23	18	54	1.59
15351579--15351650	15	4.8	15	80	0	72	4	22	19	54	1.61
15353836--15353903	31	2.1	33	89	5	104	29	11	19	39	1.87
15359255--15359472	88	2.5	85	82	9	258	33	7	20	38	1.81
15359988--15360017	12	2.4	13	94	5	53	36	0	0	63	0.95
15374090--15374122	16	2.1	16	94	0	57	42	0	21	36	1.53
15374306--15374432	61	2.1	58	82	7	148	48	4	0	45	1.28
15374306--15374462	58	2.7	58	78	10	142	50	4	1	43	1.30
15374440--15374482	21	2.0	21	86	9	59	62	2	0	34	1.08
15376467--15376498	16	2.0	16	100	0	64	12	25	31	31	1.92
15379670--15379697	5	5.6	5	100	0	56	17	0	17	64	1.30
15384227--15384271	23	2.0	22	86	4	63	71	4	13	11	1.29
15391205--15391312	23	5.0	22	82	8	132	16	22	24	37	1.94
15395265--15395299	11	3.1	11	91	4	52	85	0	14	0	0.59
15396102--15396142	17	2.5	16	80	7	55	65	7	4	21	1.37
15412909--15412945	19	1.9	19	94	0	65	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15419802--15419845	21	2.0	21	82	8	52	31	18	29	20	1.96
15421854--15422008	84	1.8	84	84	5	215	18	33	25	22	1.96
15425852--15425963	42	2.7	42	87	2	154	42	16	22	17	1.88
15431154--15431310	41	3.8	39	80	8	161	21	19	27	32	1.97
15431711--15432356	283	2.3	283	84	8	855	28	2	26	42	1.67
15432213--15432253	21	2.0	20	90	4	64	21	0	39	39	1.54
15433233--15433454	83	2.7	81	76	9	209	28	15	20	35	1.94
15432586--15433934	450	3.0	449	93	1	2272	30	15	19	34	1.93
15433683--15433902	83	2.7	83	73	7	205	29	15	19	35	1.92
15435513--15435654	66	2.2	66	88	5	207	40	18	27	14	1.89
15435650--15435721	21	3.4	21	92	0	117	34	16	43	5	1.72
15436355--15436498	43	3.3	42	80	2	153	25	17	31	25	1.97
15445767--15445860	39	2.4	40	80	8	104	42	2	14	40	1.58
15447580--15447620	18	2.3	18	91	4	66	51	0	2	46	1.14
15451737--15451783	24	2.0	24	95	0	85	23	42	23	10	1.85
15456242--15456673	108	4.1	106	88	3	568	32	19	18	29	1.95
15456242--15456673	215	2.0	211	85	5	575	32	19	18	29	1.95
15458623--15459262	44	14.6	44	78	3	612	23	24	21	31	1.98
15458623--15459269	131	4.9	131	96	0	1152	23	23	21	31	1.99
15458623--15459267	175	3.7	174	78	4	510	23	24	21	31	1.98
15459583--15459638	24	2.3	24	90	6	87	32	21	12	33	1.91
15470936--15471324	107	3.6	107	87	3	552	32	20	17	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15470936--15471324	215	1.8	213	87	3	575	32	20	17	29	1.96
15472156--15472185	13	2.3	13	94	0	51	0	56	0	43	0.99
15478840--15478898	21	2.8	21	84	0	82	38	5	18	37	1.73
15478881--15478926	18	2.6	18	86	10	67	32	8	21	36	1.84
15485748--15485811	29	2.3	27	84	7	76	64	1	0	34	1.03
15485818--15485847	13	2.3	13	94	0	51	80	0	0	20	0.72
15488984--15489083	27	3.7	27	72	15	80	40	2	1	57	1.17
15488984--15489069	29	3.1	28	78	18	90	38	2	1	58	1.19
15489042--15489085	17	2.6	17	81	0	52	45	0	0	54	0.99
15490081--15490258	28	6.4	28	81	4	189	23	16	6	53	1.65
15490080--15490246	55	3.0	55	80	5	201	23	16	5	53	1.64
15493882--15493973	37	2.4	36	81	15	98	40	3	4	52	1.38
15494598--15494680	5	16.6	5	100	0	166	20	0	19	60	1.37
15494750--15494824	34	2.2	35	81	13	86	28	9	14	48	1.75
15502446--15502476	16	1.9	16	93	0	53	45	0	3	51	1.17
15503094--15503158	34	1.9	34	84	6	87	30	9	13	46	1.75
15503282--15503577	137	2.2	138	84	2	382	28	23	16	32	1.96
15504358--15504401	21	2.1	21	83	8	54	56	4	4	34	1.40
15505816--15505850	17	2.1	17	100	0	70	37	11	11	40	1.77
15505924--15505975	24	2.2	24	89	0	77	55	5	1	36	1.35
15507868--15507918	24	2.1	24	88	0	75	56	5	1	35	1.35
15507881--15507936	24	2.4	23	84	3	67	55	7	0	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15508848--15508874	6	4.5	6	100	0	54	18	33	14	33	1.92
15512947--15512995	24	2.0	24	100	0	98	26	16	12	44	1.82
15520388--15520413	7	3.7	7	100	0	52	15	26	15	42	1.87
15522987--15523053	25	2.7	26	83	6	84	26	19	22	31	1.98
15522980--15523071	25	3.7	25	77	7	80	28	19	21	30	1.98
15527553--15527707	7	21.7	7	72	9	53	42	36	0	20	1.57
15527673--15527701	15	1.9	15	100	0	58	44	34	0	20	1.52
15527654--15527707	22	2.5	21	81	3	63	48	29	0	22	1.51
15528425--15528521	43	2.3	43	80	3	106	29	25	18	25	1.98
15528867--15528917	21	2.4	21	86	0	66	1	47	19	31	1.61
15528876--15528948	33	2.2	33	87	2	103	2	45	19	32	1.64
15530556--15530661	17	6.4	17	68	22	82	40	0	12	47	1.41
15530556--15530662	9	11.9	9	69	19	64	40	0	13	46	1.43
15530585--15530692	49	2.3	49	88	7	161	39	0	12	48	1.40
15530764--15530837	38	1.9	38	97	0	139	44	4	10	40	1.58
15530763--15530848	38	2.4	36	87	11	131	45	3	11	39	1.58
15532304--15532396	16	6.0	16	72	20	81	35	19	13	31	1.91
15532309--15532388	14	5.4	14	69	19	63	35	18	13	32	1.90
15534100--15534170	31	2.4	29	85	4	88	38	39	1	21	1.62
15534161--15534236	7	10.4	7	72	8	53	39	43	2	14	1.59
15534154--15534237	21	4.2	21	83	11	122	41	40	3	14	1.63
15534130--15534262	59	2.2	60	84	4	171	40	41	2	15	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15534165--15534241	38	2.0	38	100	0	154	38	45	2	12	1.57
15535300--15535355	8	7.2	8	74	6	53	32	46	1	19	1.61
15535330--15535388	19	3.4	16	82	15	73	30	47	0	22	1.51
15535751--15536174	114	3.7	111	81	6	444	26	25	22	25	2.00
15536615--15536742	40	3.2	39	76	7	114	21	19	19	39	1.93
15537730--15537814	43	2.0	43	83	4	109	38	1	12	47	1.50
15539529--15539678	40	3.7	39	76	7	106	36	20	25	17	1.94
15539747--15539812	24	3.0	24	63	28	65	15	21	30	33	1.94
15539821--15539891	25	3.2	25	62	29	68	15	30	26	26	1.96
15539719--15540083	42	8.8	42	87	1	452	15	25	27	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207