genome.fa.s19.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  149  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45692855--45692911	19	2.9	20	70	15	55	64	1	7	26	1.28
45692895--45692958	26	2.4	27	89	5	96	54	6	4	34	1.46
45693126--45693205	28	2.8	30	78	14	98	38	1	0	60	1.05
45693154--45693216	19	3.4	19	78	8	67	36	0	1	61	1.05
45693116--45693207	37	2.4	38	82	8	100	36	1	0	61	1.03
45693118--45693231	9	12.4	9	69	19	67	34	0	0	64	1.06
45693137--45693231	37	2.6	37	80	11	90	36	0	1	62	1.03
45693134--45693230	28	3.6	26	81	14	90	37	0	1	61	1.03
45712267--45712537	42	6.4	42	86	6	334	32	21	20	25	1.97
45712266--45712494	85	2.7	85	88	2	343	33	20	20	25	1.97
45712267--45712537	127	2.1	127	86	6	370	32	21	20	25	1.97
45712267--45712537	85	3.2	83	84	7	332	32	21	20	25	1.97
45712973--45713038	21	3.1	21	84	0	87	1	39	21	37	1.63
45718199--45718230	16	2.0	16	100	0	64	18	25	31	25	1.98
45718523--45718897	9	43.9	9	68	14	136	30	4	19	46	1.69
45718532--45718659	16	7.6	17	72	10	77	29	4	19	46	1.70
45718648--45718720	34	2.1	34	94	0	128	28	6	20	43	1.77
45718635--45718694	25	2.4	25	77	0	66	28	5	23	43	1.74
45718706--45718778	37	2.0	37	100	0	146	30	2	16	50	1.59
45720098--45720127	14	2.1	14	100	0	60	53	6	13	26	1.64
45720329--45720430	54	1.9	54	90	6	163	50	19	2	27	1.62
45720608--45720654	22	2.1	22	92	0	76	42	19	8	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45721637--45721674	7	5.3	7	93	6	67	44	39	0	15	1.47
45721637--45721674	15	2.6	15	95	4	69	44	39	0	15	1.47
45721773--45721829	22	2.7	21	86	2	78	42	38	1	17	1.60
45721820--45721875	23	2.4	23	93	0	94	42	41	0	16	1.48
45721775--45721895	7	16.7	7	70	14	68	42	38	0	18	1.56
45722109--45722772	113	5.9	114	73	6	420	26	21	19	32	1.97
45725052--45725102	21	2.4	21	74	6	50	9	9	11	68	1.39
45729652--45729691	12	3.3	12	85	0	53	20	30	50	0	1.49
45729647--45729680	9	3.8	9	96	0	59	17	35	47	0	1.48
45743013--45743058	23	1.9	25	86	8	69	32	4	4	58	1.37
45745253--45745733	27	17.8	27	78	6	255	43	20	15	20	1.88
45745251--45745667	81	5.1	81	76	6	310	43	21	16	19	1.88
45745267--45745720	54	8.4	54	77	4	285	43	20	15	20	1.88
45745779--45745841	24	2.6	24	87	0	81	23	7	23	44	1.80
45745905--45745968	27	2.4	27	82	14	80	20	25	21	32	1.97
45746011--45746105	32	3.0	32	84	0	118	22	21	22	34	1.97
45749586--45749661	23	3.3	23	84	0	107	26	21	21	31	1.98
45752361--45752584	40	5.7	40	83	7	244	25	27	21	25	1.99
45752361--45752584	79	2.8	78	77	8	213	25	27	21	25	1.99
45755169--45755282	42	2.7	42	87	0	147	29	11	19	39	1.87
45755373--45755491	24	5.0	24	86	0	130	25	22	21	30	1.99
45776087--45776195	41	2.7	41	86	0	155	30	24	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45782497--45782527	16	1.9	16	93	0	53	22	0	9	67	1.19
45783681--45783864	101	1.8	102	88	5	284	25	17	26	30	1.97
45783677--45783863	51	3.7	48	72	13	162	25	17	27	30	1.97
45802156--45802186	3	10.3	3	100	0	62	67	0	0	32	0.91
45802212--45802263	6	8.2	6	77	12	50	75	3	5	15	1.14
45803908--45803971	27	2.4	28	81	7	78	35	9	26	28	1.87
45804138--45804164	5	5.4	5	100	0	54	59	0	0	40	0.98
45804184--45804230	10	4.6	10	78	10	51	25	0	4	70	1.05
45804190--45804227	19	2.1	18	85	9	51	26	0	5	68	1.11
45804809--45804848	11	3.6	11	90	9	64	0	7	2	90	0.55
45804806--45804846	13	3.2	13	85	0	55	0	9	2	87	0.62
45804845--45804877	7	4.7	7	100	0	66	12	12	15	60	1.59
45804806--45804855	24	2.1	24	81	7	57	2	10	4	84	0.84
45805798--45805872	29	2.6	29	82	6	98	26	21	32	20	1.97
45806201--45806361	84	1.9	85	84	6	220	40	9	20	29	1.83
45809560--45809726	59	2.8	58	85	3	217	52	8	5	33	1.56
45810089--45810124	18	2.0	18	94	0	63	41	5	27	25	1.77
45816820--45816848	8	3.8	8	95	4	51	0	24	0	75	0.80
45823383--45823542	85	1.9	85	81	10	193	52	3	1	42	1.27
45827953--45827985	17	2.0	17	94	5	59	48	0	0	51	1.00
45827942--45828023	19	4.2	20	73	21	77	41	0	1	57	1.06
45831143--45831174	15	2.2	14	94	5	55	84	0	12	3	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45832487--45832511	13	1.9	13	100	0	50	56	12	0	32	1.36
45832866--45833113	119	2.1	119	98	0	478	29	14	13	42	1.84
45833455--45833507	21	2.5	21	90	6	81	30	35	9	24	1.87
45835517--45835583	13	5.1	13	81	3	89	29	7	25	37	1.83
45836779--45836803	11	2.3	11	100	0	50	72	0	12	16	1.13
45842758--45842956	41	4.9	41	84	4	233	29	21	28	20	1.98
45842771--45842941	81	2.1	82	84	6	231	29	22	28	19	1.98
45843144--45843205	31	2.0	31	96	0	115	27	9	27	35	1.88
45850474--45850660	41	4.6	41	83	4	200	28	21	30	19	1.98
45850848--45850909	31	2.0	31	93	0	106	27	8	27	37	1.85
45875977--45876125	25	6.0	25	75	12	126	22	14	25	36	1.93
45875997--45876115	50	2.4	50	89	0	184	22	15	24	36	1.94
45880850--45880902	26	2.0	26	81	0	61	45	22	0	32	1.53
45880867--45880901	18	2.0	17	88	5	52	45	22	0	31	1.53
45881625--45881797	85	2.0	84	98	1	337	28	15	15	41	1.87
45882729--45882774	22	2.1	22	100	0	92	36	13	4	45	1.63
45883432--45883470	19	2.1	19	95	0	69	20	7	15	56	1.63
45890334--45890385	22	2.4	22	83	0	68	15	15	17	51	1.76
45892212--45892260	24	2.0	25	84	4	64	30	22	26	20	1.98
45892251--45892319	25	2.9	24	84	4	77	36	17	24	21	1.95
45896989--45897034	18	2.6	18	86	6	67	39	0	4	56	1.19
45899600--45899652	25	2.1	25	82	0	61	30	11	15	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45906678--45906738	33	2.0	30	84	15	81	36	6	18	39	1.76
45906986--45907080	5	19.0	5	73	12	52	35	6	18	38	1.77
45923638--45923771	67	2.0	67	81	11	159	35	16	25	23	1.95
45931039--45931078	21	1.9	21	85	10	55	77	0	0	22	0.77
45931029--45931067	15	2.5	16	83	8	53	74	0	2	23	0.94
45936059--45936095	3	12.3	3	100	0	74	32	0	0	67	0.91
45936135--45936179	22	2.0	22	87	8	65	24	6	2	66	1.27
45950409--45950470	18	3.6	18	77	14	60	61	3	1	33	1.22
45953507--45953547	21	2.0	21	90	0	64	70	4	0	24	1.06
45955771--45955818	20	2.4	20	78	0	60	43	16	2	37	1.60
45956308--45956358	26	1.9	27	84	4	68	66	11	3	17	1.38
45974709--45974739	15	2.1	15	93	0	53	32	3	0	64	1.09
45974757--45974798	3	14.0	3	100	0	84	33	0	0	66	0.92
45975224--45975270	18	2.7	18	86	3	60	48	4	6	40	1.48
45977210--45977354	67	2.2	67	84	0	200	36	16	23	23	1.94
45980131--45980314	79	2.3	80	83	8	225	25	27	22	24	2.00
45980131--45980314	40	4.7	40	83	8	225	25	27	22	24	2.00
45987998--45988177	78	2.3	80	82	8	217	25	27	22	25	2.00
45987998--45988181	40	4.7	40	82	9	225	25	27	22	24	2.00
45994120--45994162	10	4.1	10	82	11	50	58	6	0	34	1.25
46006924--46006966	20	2.2	20	82	0	50	41	0	23	34	1.55
46010157--46010224	20	3.4	20	81	0	82	13	29	14	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46017412--46017457	20	2.2	20	81	11	58	28	28	23	19	1.98
46029142--46029320	51	3.5	50	76	6	175	24	17	27	30	1.97
46033430--46033523	49	1.9	49	91	0	152	24	18	25	31	1.97
46034518--46034595	20	3.9	19	73	6	66	37	11	5	46	1.62
46035016--46035058	21	2.0	22	86	4	61	72	11	2	13	1.22
46042566--46042701	43	3.2	42	77	4	146	30	27	19	23	1.98
46043910--46044102	50	3.8	50	92	0	314	25	23	29	21	1.99
46051445--46051637	50	3.8	50	89	0	287	26	23	28	21	1.99
46052966--46053066	43	2.4	42	89	1	157	37	27	12	21	1.90
46054728--46054753	2	13.0	2	100	0	52	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207