genome.fa.s19.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  114  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34238996--34239056	20	3.0	20	79	11	61	52	1	1	44	1.20
34239008--34239056	19	2.6	18	83	9	62	53	2	0	44	1.12
34239194--34239255	29	2.1	29	96	0	115	54	6	17	20	1.65
34240136--34240176	17	2.4	18	84	12	59	29	19	14	36	1.92
34245155--34245213	27	2.2	27	87	3	84	23	32	16	27	1.96
34246694--34246751	30	1.9	30	85	0	80	41	5	25	27	1.76
34247141--34247264	50	2.5	50	81	2	133	28	25	26	20	1.99
34248417--34248482	27	2.5	26	83	11	80	21	22	18	37	1.94
34251303--34251359	25	2.3	26	81	9	73	21	17	19	42	1.90
34252218--34252285	34	2.0	35	97	2	129	8	1	29	60	1.36
34253241--34253576	137	2.4	138	89	1	496	38	9	7	44	1.64
34256674--34256702	8	3.8	8	90	9	51	24	48	0	27	1.51
34262654--34262727	22	3.4	23	68	22	61	56	9	17	16	1.65
34266666--34266722	23	2.4	25	80	14	66	26	5	12	56	1.57
34268860--34268897	19	2.0	19	85	10	51	21	39	0	39	1.53
34270252--34270398	64	2.3	65	80	3	172	28	6	29	36	1.81
34272461--34272538	23	3.5	23	63	10	63	32	26	23	17	1.97
34272471--34272553	43	1.9	43	97	0	157	30	22	22	24	1.99
34285499--34285577	25	3.3	25	61	10	65	32	5	29	32	1.79
34285483--34285909	47	9.1	47	94	0	719	32	9	29	28	1.88
34286028--34286106	37	2.1	37	88	4	115	25	18	30	25	1.98
34287978--34288080	43	2.4	43	100	0	206	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34288498--34288614	40	2.9	40	88	0	171	26	22	26	24	2.00
34288465--34288614	80	1.9	80	83	5	196	27	20	26	25	1.99
34292009--34292387	47	8.1	47	94	0	643	32	9	30	28	1.88
34292506--34292584	37	2.1	37	88	4	115	25	18	30	25	1.98
34302850--34303006	27	5.8	27	89	3	192	35	22	19	21	1.96
34303016--34303097	24	3.5	23	86	5	110	23	7	23	46	1.77
34303213--34303272	26	2.3	26	85	0	75	20	20	23	36	1.95
34303226--34303278	26	2.0	26	88	0	79	15	20	30	33	1.93
34303267--34303439	32	5.4	32	78	3	170	20	22	20	36	1.95
34303266--34303425	64	2.5	64	89	0	239	20	23	20	35	1.96
34303431--34303477	22	2.1	22	84	0	58	19	17	17	46	1.84
34305550--34305584	3	11.7	3	93	0	61	0	0	28	71	0.86
34311525--34311624	28	3.6	28	81	0	128	35	23	18	24	1.96
34311956--34312037	27	3.0	27	82	7	78	24	17	21	36	1.94
34311992--34312072	27	2.9	28	87	5	103	22	13	24	39	1.90
34320862--34320983	23	5.3	23	83	3	156	32	25	20	21	1.97
34320862--34320983	46	2.7	46	86	0	181	32	25	20	21	1.97
34321070--34321116	23	2.1	23	84	11	62	51	8	10	29	1.66
34321183--34321219	9	4.1	9	85	0	56	48	13	8	29	1.71
34326588--34326612	10	2.5	10	100	0	50	32	40	0	28	1.57
34329670--34329694	9	2.8	9	100	0	50	48	20	8	24	1.76
34330060--34330200	39	3.6	39	93	0	228	43	19	4	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34336770--34337215	51	8.8	50	77	5	407	29	25	15	29	1.96
34336771--34337215	102	4.4	102	87	5	591	29	25	15	29	1.96
34339651--34339759	50	2.2	51	90	6	177	26	23	5	44	1.75
34350356--34350386	7	4.4	7	100	0	62	45	16	0	38	1.47
34350969--34351514	275	2.0	275	94	0	950	33	24	17	24	1.97
34359989--34360045	25	2.3	25	100	0	114	24	33	28	14	1.94
34366787--34367063	68	4.1	66	84	3	331	38	18	19	23	1.93
34366788--34367063	136	2.1	133	86	4	376	38	18	19	23	1.93
34367129--34367161	11	3.1	11	91	4	50	12	0	9	78	0.95
34367129--34367170	21	2.0	21	86	13	61	11	0	9	78	0.96
34372750--34372831	25	3.1	27	78	15	64	51	2	1	45	1.22
34372781--34372848	25	3.2	20	75	20	66	57	0	0	42	0.98
34372785--34372834	25	2.0	25	92	3	84	48	0	0	52	1.00
34372810--34372886	19	4.1	19	72	20	63	59	0	2	37	1.11
34372811--34372848	20	2.0	20	94	5	69	57	0	0	42	0.98
34373174--34373213	21	1.9	21	90	10	64	55	12	10	22	1.67
34373369--34373420	26	2.0	26	100	0	104	26	11	15	46	1.80
34375797--34375856	28	2.1	28	90	6	95	38	3	8	50	1.49
34376074--34376128	24	2.1	27	83	9	71	32	0	12	54	1.38
34405801--34405854	28	1.9	28	81	7	65	46	1	5	46	1.37
34406744--34406860	41	2.8	43	80	3	139	26	18	26	28	1.98
34407081--34407304	43	5.2	42	87	5	297	24	24	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34407647--34407716	21	3.4	21	90	2	106	4	45	17	32	1.67
34409454--34409515	25	2.4	26	89	2	90	40	1	14	43	1.55
34409454--34409525	17	4.2	17	72	13	58	40	1	13	44	1.53
34409621--34409720	9	11.4	9	76	9	66	32	0	19	49	1.49
34413299--34413346	21	2.3	20	79	10	51	39	37	2	20	1.65
34413319--34413426	21	5.5	21	66	18	72	39	37	2	20	1.67
34413340--34413405	17	3.6	17	71	15	60	37	37	1	22	1.64
34413316--34413426	38	2.9	38	93	2	179	38	37	2	20	1.67
34413662--34414336	115	5.9	114	84	3	818	25	24	21	27	1.99
34431032--34431091	22	2.7	23	73	19	63	66	6	0	26	1.16
34431041--34431074	4	8.0	4	90	9	50	73	2	0	23	0.97
34436450--34436490	16	2.6	16	96	0	73	41	17	4	36	1.71
34437590--34437620	14	2.2	14	94	0	53	6	16	3	74	1.16
34443725--34443813	24	4.0	22	76	17	78	68	0	19	12	1.20
34443746--34443789	6	7.3	6	82	10	54	65	0	18	15	1.27
34443926--34443965	19	2.2	19	86	13	57	60	2	27	10	1.42
34446833--34446875	22	2.0	21	86	4	59	34	0	9	55	1.32
34448176--34448209	11	3.0	11	91	4	50	70	2	8	17	1.25
34448192--34448224	15	2.4	14	90	10	50	75	6	9	9	1.18
34449271--34449343	12	6.5	12	72	16	50	68	1	20	9	1.25
34449284--34449339	21	2.7	21	75	8	60	69	0	21	8	1.15
34455365--34455408	12	3.5	13	84	9	56	63	6	4	25	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34457031--34457087	30	1.9	29	82	3	69	24	24	19	31	1.98
34463855--34463937	12	6.9	12	71	14	55	13	16	0	69	1.18
34463884--34463936	27	1.9	28	88	3	81	15	16	0	67	1.23
34463819--34463926	39	2.8	39	84	2	137	13	19	0	65	1.32
34463855--34463938	39	2.2	39	86	0	114	13	16	0	70	1.17
34471838--34471866	12	2.5	12	94	5	51	20	3	10	65	1.38
34473115--34473189	20	3.2	25	64	21	72	45	16	10	28	1.80
34473100--34473191	44	2.1	44	97	0	175	46	14	10	28	1.78
34474723--34474764	16	2.6	16	92	0	66	28	11	30	28	1.92
34476250--34476453	92	2.2	92	84	3	259	32	18	17	31	1.94
34476250--34476480	92	2.5	91	81	4	234	32	19	16	31	1.94
34477701--34477730	15	2.0	15	100	0	60	60	0	20	20	1.37
34480567--34480670	39	2.7	39	83	1	120	31	7	15	45	1.74
34480645--34480726	38	2.1	38	82	10	96	31	7	14	46	1.72
34489772--34489800	10	2.9	10	100	0	58	72	6	0	20	1.07
34490871--34490930	6	10.5	6	82	10	81	68	0	16	15	1.22
34490933--34490996	34	1.9	34	87	9	96	51	6	29	12	1.64
34497757--34497816	30	2.0	31	87	9	88	53	11	8	26	1.65
34502606--34502635	16	1.9	15	93	6	51	33	10	3	53	1.51
34503672--34503703	11	3.1	11	82	17	50	62	18	0	18	1.33
34503672--34503716	9	4.7	9	91	8	63	57	22	0	20	1.40
34503672--34503716	20	2.3	19	88	11	65	57	22	0	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34503799--34503883	39	2.2	40	89	2	136	49	11	8	30	1.69
34506223--34506264	18	2.4	17	88	11	59	4	16	2	76	1.07
34507957--34507989	11	3.2	11	83	16	52	57	18	0	24	1.40
34507957--34507992	10	3.6	10	88	11	56	55	22	0	22	1.44
34508082--34508160	40	2.0	40	97	0	149	44	15	10	30	1.79
34508114--34508254	70	2.0	70	92	0	237	45	13	12	29	1.79
34522644--34522685	22	2.0	21	85	4	57	16	28	11	42	1.84
34530768--34530810	20	2.2	20	86	0	59	53	2	30	13	1.53
34543375--34543413	20	2.0	20	84	0	51	33	15	30	20	1.94
34543378--34543451	30	2.5	30	80	4	78	32	13	36	17	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207