genome.fa.s19.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  147  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45021058--45021589	54	9.9	54	82	1	469	37	13	22	26	1.91
45023556--45023586	15	2.1	15	93	0	53	35	25	6	32	1.82
45023969--45024403	46	9.6	46	95	1	747	28	22	15	33	1.95
45023969--45024403	91	4.8	91	95	1	759	28	22	15	33	1.95
45023969--45024403	136	3.2	137	94	1	761	28	22	15	33	1.95
45028022--45028063	21	1.9	23	85	9	61	21	23	4	50	1.68
45030361--45030845	41	11.9	41	81	3	494	19	21	30	29	1.97
45031495--45031571	28	2.7	28	76	8	66	28	0	35	36	1.58
45032228--45032335	24	4.7	23	67	27	59	52	8	0	37	1.38
45032319--45032349	14	2.1	15	94	5	55	54	6	0	38	1.26
45032335--45032368	18	1.9	17	88	5	50	55	2	0	41	1.15
45032266--45032415	78	1.9	77	90	6	241	55	6	0	37	1.31
45036435--45036635	43	4.7	43	83	3	244	27	16	26	28	1.97
45043298--45043417	60	2.0	61	91	1	197	32	15	11	40	1.83
45043395--45043446	25	2.1	25	92	0	86	30	11	23	34	1.90
45045217--45045265	22	2.3	22	82	3	64	63	8	14	14	1.52
45048400--45048458	28	2.1	29	96	3	111	28	37	11	22	1.89
45049571--45049612	11	3.8	11	80	0	57	19	16	7	57	1.62
45049539--45049620	22	3.8	22	71	16	64	14	12	8	64	1.49
45049724--45049754	11	2.9	11	95	4	55	25	0	6	67	1.14
45069133--45069199	32	2.2	32	79	10	79	20	7	26	44	1.78
45078967--45079258	145	2.0	145	97	0	557	22	26	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45092678--45092731	20	2.7	21	74	8	58	33	9	18	38	1.83
45102338--45102386	20	2.5	20	86	6	64	10	36	18	34	1.85
45103399--45103525	50	2.5	51	82	8	161	35	12	9	42	1.75
45103781--45103819	16	2.4	16	95	0	69	38	0	2	58	1.12
45106278--45106315	20	1.9	20	88	0	58	52	10	2	34	1.50
45106956--45106986	15	2.0	16	93	6	55	80	0	0	19	0.71
45106956--45107029	9	8.4	8	75	16	51	75	1	5	17	1.06
45107362--45107391	7	4.3	7	100	0	60	30	13	43	13	1.82
45110225--45110463	51	4.7	50	78	4	237	25	17	27	30	1.97
45110225--45110500	101	2.7	102	80	6	310	26	15	26	30	1.96
45113054--45113091	18	2.1	18	90	0	58	21	26	10	42	1.85
45113338--45113398	21	2.9	21	80	4	61	27	37	21	13	1.90
45116720--45117010	126	2.3	126	90	2	451	27	21	19	31	1.97
45118134--45118192	22	2.7	22	83	0	73	18	8	6	66	1.41
45118124--45118169	11	4.2	11	80	0	56	15	6	2	76	1.09
45120099--45120131	2	16.5	2	100	0	66	51	0	0	48	1.00
45124317--45124510	37	5.0	37	85	10	262	38	13	20	28	1.90
45124317--45124549	83	2.9	79	87	7	266	37	14	20	27	1.91
45124279--45124510	120	1.9	120	93	0	401	37	12	21	28	1.90
45128713--45128843	66	2.0	66	84	0	172	25	17	29	28	1.97
45129428--45129484	26	2.2	26	84	6	71	33	24	1	40	1.66
45129436--45129486	26	2.0	26	92	0	84	29	25	1	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45130545--45130608	32	2.0	32	100	0	128	37	6	28	28	1.81
45134264--45134486	119	1.9	120	82	8	285	25	28	21	24	1.99
45134262--45134486	40	5.7	40	83	8	271	25	28	21	24	1.99
45144979--45145047	30	2.3	29	83	11	95	36	13	24	26	1.92
45151627--45151700	31	2.4	31	88	6	107	41	12	24	21	1.87
45151681--45151865	30	6.2	30	73	9	112	38	13	25	21	1.90
45151689--45151759	29	2.4	30	88	2	108	42	11	28	18	1.84
45151655--45151848	89	2.2	89	80	5	205	39	12	26	21	1.90
45151808--45151863	29	1.9	29	88	0	85	35	16	32	16	1.90
45151627--45151860	119	2.0	120	87	2	337	38	13	26	21	1.91
45155307--45155386	42	1.9	42	94	0	142	21	21	22	35	1.96
45155453--45155481	15	2.0	15	93	6	51	62	24	6	6	1.45
45155552--45155726	9	19.9	9	77	6	180	33	1	18	45	1.60
45155590--45155669	34	2.4	34	82	0	97	33	2	21	42	1.66
45155738--45155833	20	4.9	20	71	16	85	42	6	7	43	1.57
45155706--45155870	57	2.9	57	91	0	269	40	4	9	45	1.58
45155815--45155952	37	3.7	37	95	0	231	35	5	9	50	1.57
45155887--45156022	56	2.4	57	87	2	202	38	3	7	50	1.48
45158494--45158535	19	2.2	19	86	0	57	23	2	45	28	1.66
45159575--45159672	20	4.8	20	74	9	81	47	40	0	11	1.39
45159592--45159664	14	5.3	13	75	6	56	49	42	0	8	1.32
45159627--45159678	27	1.9	27	84	0	68	55	38	0	5	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45160696--45160801	41	2.6	41	86	5	151	31	25	24	18	1.98
45160578--45160865	155	1.9	154	86	4	395	30	24	22	21	1.99
45160770--45160982	114	1.9	113	86	2	302	27	23	23	26	2.00
45164747--45164791	21	2.1	21	87	0	63	57	0	4	37	1.19
45180320--45180362	21	2.0	21	86	0	59	51	18	6	23	1.70
45192994--45193219	120	1.9	120	82	9	291	25	26	21	26	2.00
45192994--45193219	40	5.7	40	81	11	241	25	26	21	26	2.00
45195910--45195986	38	2.0	38	100	0	154	20	15	20	42	1.88
45198234--45198313	25	3.2	25	84	7	92	30	20	20	30	1.97
45202197--45202231	16	2.2	16	89	0	52	20	8	22	48	1.76
45205800--45205838	11	3.5	11	86	6	60	76	0	23	0	0.78
45208126--45208225	51	2.0	51	91	0	164	32	16	23	29	1.95
45208160--45208297	72	1.9	72	83	0	177	35	14	23	26	1.93
45208232--45208371	51	2.7	51	80	0	172	32	15	22	28	1.95
45208241--45208741	138	3.8	133	77	8	529	29	15	25	28	1.96
45208047--45208764	261	2.8	260	87	0	1058	30	15	25	28	1.96
45208494--45208632	51	2.7	51	79	0	143	27	19	25	27	1.99
45208547--45208708	87	1.9	87	82	0	207	27	17	26	29	1.97
45208634--45208741	51	2.1	51	85	0	144	28	14	26	29	1.95
45208720--45208762	21	2.0	21	90	0	68	39	4	30	25	1.76
45208725--45208778	21	2.6	21	84	0	63	44	5	27	22	1.75
45208785--45208955	44	4.0	42	75	10	148	29	16	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45208786--45208910	42	2.9	44	84	2	146	28	16	25	29	1.97
45208906--45209006	51	2.0	51	90	3	159	31	15	24	27	1.96
45210677--45210723	26	2.0	24	84	16	62	29	4	2	63	1.25
45210770--45210918	25	6.2	25	73	9	96	34	6	3	55	1.43
45211162--45211209	24	2.0	24	95	0	87	35	4	2	58	1.29
45223173--45223220	20	2.6	19	81	12	55	75	0	6	18	1.01
45223175--45223244	17	3.9	17	75	9	59	77	1	4	17	1.01
45223175--45223245	6	11.7	6	74	14	56	77	1	4	16	1.00
45238419--45238477	27	2.2	27	96	0	109	11	16	44	27	1.83
45241608--45241697	44	2.0	44	100	0	180	35	8	17	37	1.81
45248646--45248701	29	1.9	29	88	0	85	26	7	19	46	1.76
45265856--45265880	12	2.1	12	100	0	50	36	16	8	40	1.77
45266760--45266811	21	2.5	21	87	0	77	46	17	5	30	1.71
45272033--45272227	40	4.9	40	88	1	284	17	29	17	34	1.94
45272033--45272216	20	9.2	20	66	11	108	17	30	18	33	1.95
45280543--45280628	21	4.1	21	74	5	75	43	17	6	32	1.76
45285269--45285322	27	2.0	27	92	0	90	33	3	9	53	1.50
45289248--45289316	22	3.1	22	81	4	68	43	15	21	18	1.88
45291275--45291330	27	2.1	27	96	0	103	19	19	14	46	1.84
45296193--45296252	27	2.2	26	85	8	84	33	21	28	16	1.95
45296202--45296254	27	2.0	27	96	0	97	33	22	26	16	1.96
45296928--45296990	19	3.3	19	68	0	63	41	9	3	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45297025--45297059	17	2.0	17	88	5	52	48	0	17	34	1.47
45297521--45297578	28	2.1	28	87	6	82	51	0	5	43	1.24
45298312--45298393	40	2.0	43	85	9	116	48	1	4	45	1.31
45298360--45298414	18	3.1	18	75	12	60	50	0	1	47	1.11
45298484--45298511	6	4.7	6	100	0	56	53	0	0	46	1.00
45304150--45304191	15	2.7	16	77	3	50	26	2	2	69	1.13
45308505--45308663	79	2.0	79	100	0	318	17	10	30	42	1.82
45312189--45312277	31	3.0	29	81	5	97	35	10	10	43	1.72
45313476--45313530	20	2.8	20	83	10	60	52	9	1	36	1.44
45315068--45315127	30	2.0	31	86	3	86	20	40	0	40	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207