genome.fa.s19.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  16  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5068897--5068928	13	2.5	13	94	0	55	56	12	0	31	1.37
5069139--5069196	30	1.9	30	89	0	89	31	24	3	41	1.71
5071610--5071706	50	1.9	50	91	0	158	29	19	20	29	1.97
5072228--5072351	30	4.1	30	92	1	194	26	23	6	43	1.78
5072238--5072345	15	7.2	15	68	12	78	26	21	7	44	1.78
5076915--5077008	30	3.1	30	90	1	143	25	24	6	43	1.78
5076925--5077002	15	5.2	15	67	11	61	25	21	7	44	1.79
5080467--5080607	41	3.4	41	69	10	117	39	27	14	18	1.90
5080472--5080648	82	2.2	82	81	5	214	37	26	16	18	1.92
5091178--5091238	32	1.9	32	100	0	122	24	22	19	32	1.97
5091207--5091388	40	4.6	40	93	0	310	28	21	18	31	1.97
5106323--5106453	65	2.0	65	95	0	235	34	9	18	38	1.82
5110463--5110586	61	2.0	61	93	0	212	28	20	23	27	1.99
5110821--5110855	14	2.4	15	90	4	54	71	2	0	25	1.00
5110851--5110952	30	3.4	30	86	2	134	29	21	3	45	1.70
5111324--5111358	3	11.3	3	93	6	61	68	0	31	0	0.90
5111493--5111562	15	4.5	15	75	12	54	67	20	10	2	1.33
5111488--5111549	31	2.0	31	84	9	81	69	19	8	3	1.28
5111525--5111566	15	2.6	16	81	11	59	69	16	14	0	1.20
5111679--5111770	13	6.7	13	73	19	80	81	0	18	0	0.69
5111678--5111766	8	11.0	8	75	15	85	80	0	19	0	0.70
5111678--5111771	19	4.6	21	74	14	90	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5111695--5111770	11	6.7	11	80	15	84	82	0	17	0	0.66
5111678--5111768	35	2.5	36	84	11	116	81	0	18	0	0.69
5111679--5111770	28	3.3	29	79	11	95	81	0	18	0	0.69
5112310--5112352	22	2.0	22	86	8	63	53	16	4	25	1.62
5112368--5112457	33	2.6	34	87	3	128	33	11	8	46	1.70
5112348--5112457	17	6.4	17	84	7	132	31	11	9	47	1.72
5112395--5112469	35	2.1	35	82	0	87	28	14	9	48	1.75
5112468--5112509	17	2.5	17	85	11	52	28	7	14	50	1.69
5120667--5120840	70	2.5	69	82	5	192	30	13	22	32	1.93
5120667--5121306	194	3.3	191	93	3	1102	29	14	20	35	1.92
5120931--5121160	124	1.9	124	83	5	304	30	14	20	34	1.92
5121124--5121443	124	2.6	123	87	5	455	26	14	21	37	1.92
5121200--5121407	55	3.5	55	68	21	161	27	13	21	37	1.91
5121427--5121460	16	2.1	17	88	5	52	17	11	5	64	1.45
5121366--5121765	180	2.2	179	87	7	562	27	18	18	36	1.94
5121353--5121765	87	4.6	88	80	9	462	26	17	17	37	1.93
5121709--5121926	54	4.1	55	87	8	315	28	16	17	37	1.92
5122197--5122253	30	1.9	30	88	0	87	31	21	3	43	1.69
5122181--5122283	35	3.1	35	73	13	126	42	16	2	37	1.63
5122900--5123023	61	2.0	61	93	0	212	28	20	23	27	1.99
5123258--5123292	14	2.4	15	90	4	54	71	2	0	25	1.00
5123288--5123389	30	3.4	30	86	2	134	29	21	3	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5123652--5123701	10	5.2	10	80	7	59	70	0	30	0	0.88
5123655--5123697	19	2.3	19	88	11	63	69	0	30	0	0.88
5123767--5123803	3	12.3	3	88	0	56	72	0	27	0	0.84
5123767--5123820	12	4.6	12	88	8	76	77	0	22	0	0.76
5123767--5123820	9	6.1	9	83	14	60	77	0	22	0	0.76
5123917--5124001	31	2.7	29	79	15	89	70	21	7	1	1.17
5123964--5124002	13	2.8	13	88	7	51	69	17	12	0	1.19
5124135--5124195	15	3.7	15	80	18	68	80	0	19	0	0.72
5124137--5124200	16	3.5	20	73	20	66	79	0	20	0	0.73
5124119--5124200	28	2.9	27	85	12	96	78	0	21	0	0.76
5124122--5124195	35	2.1	34	85	9	96	78	0	21	0	0.75
5124131--5124199	11	6.1	11	72	12	59	81	0	18	0	0.70
5124521--5124559	21	1.9	21	84	5	53	53	10	2	33	1.48
5124744--5124785	21	2.1	21	86	8	61	52	16	4	26	1.63
5124781--5124943	17	9.4	17	78	9	159	30	12	9	47	1.73
5124781--5124943	35	4.7	34	79	8	168	30	12	9	47	1.73
5129519--5129567	22	2.2	21	78	7	53	61	2	6	30	1.32
5129606--5129686	26	2.9	26	80	12	74	45	1	13	39	1.52
5129769--5129833	3	21.3	3	90	3	103	64	1	3	30	1.18
5131091--5131177	35	2.5	35	100	0	174	36	0	12	50	1.41
5131111--5131173	16	3.8	16	76	19	74	34	0	11	53	1.36
5131091--5131179	19	5.0	19	72	24	86	35	0	12	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5131228--5131318	22	4.1	22	85	4	112	21	2	30	45	1.64
5131335--5131374	7	5.9	7	83	16	57	52	0	0	47	1.00
5131332--5131374	12	3.3	12	78	15	50	53	0	0	46	1.00
5131390--5131462	22	3.4	22	92	1	112	19	1	34	45	1.59
5131246--5131914	155	4.4	155	92	3	1074	31	1	21	44	1.63
5131408--5132295	155	6.2	133	77	18	796	33	1	19	45	1.60
5131546--5131615	21	3.3	21	90	6	115	22	1	32	42	1.63
5131643--5131682	7	5.9	7	83	16	57	52	0	0	47	1.00
5131246--5132295	308	3.6	300	89	6	1425	32	1	20	45	1.61
5131694--5131762	21	3.3	21	92	6	113	23	1	33	42	1.63
5131701--5131770	22	3.2	21	91	2	104	22	1	30	45	1.61
5131836--5131909	21	3.4	21	87	7	69	27	0	25	47	1.52
5131850--5131914	21	3.0	21	95	2	112	24	0	32	43	1.55
5131924--5131963	7	5.9	7	83	16	57	52	0	0	47	1.00
5131975--5132043	21	3.3	21	90	6	104	26	1	31	40	1.65
5131984--5132051	22	3.1	21	93	2	109	25	1	27	45	1.62
5131247--5132177	155	6.3	147	83	11	1034	32	1	20	45	1.61
5132133--5132185	22	2.4	22	93	0	88	22	1	30	45	1.63
5132155--5133018	110	7.3	110	79	15	849	34	1	16	47	1.58
5132027--5133267	244	5.1	242	81	12	1343	34	1	17	47	1.58
5132263--5132316	28	1.9	28	88	7	83	25	0	27	46	1.53
5132327--5132373	19	2.5	19	86	6	60	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5132265--5133290	125	8.2	134	77	15	876	33	1	17	46	1.59
5132567--5132618	26	2.0	26	88	7	79	50	0	0	50	1.00
5132621--5132675	22	2.5	22	93	0	92	21	1	29	47	1.61
5132539--5133298	125	6.1	124	85	9	1089	33	1	18	47	1.59
5132692--5132743	26	2.0	26	88	7	79	50	0	0	50	1.00
5132744--5132789	21	2.2	21	96	0	83	23	0	32	43	1.54
5132769--5132815	15	3.2	15	72	27	55	25	0	34	40	1.56
5132760--5132815	29	1.9	29	100	0	112	25	0	33	41	1.56
5132766--5132818	14	3.7	14	75	22	56	22	0	32	45	1.53
5132935--5132986	26	2.0	26	88	7	79	50	0	0	50	1.00
5132876--5133291	131	3.2	129	88	6	644	32	2	19	46	1.62
5132986--5133040	21	2.6	21	91	2	83	23	3	32	40	1.72
5132263--5133434	499	2.3	495	87	8	1596	33	1	17	47	1.58
5133120--5133174	22	2.5	22	87	0	83	21	1	27	49	1.60
5132907--5133450	278	2.0	261	87	7	776	32	1	18	47	1.60
5133229--5133318	22	4.1	21	88	5	74	25	0	28	45	1.54
5133255--5133318	22	3.0	22	93	2	112	25	0	32	42	1.55
5133229--5133318	43	2.1	44	83	10	114	25	0	28	45	1.54
5133118--5133451	153	2.2	148	89	4	519	30	1	21	46	1.60
5133396--5133436	21	2.0	21	90	0	64	29	0	26	43	1.55
5133404--5133450	21	2.2	22	92	3	78	21	2	27	48	1.61
5135231--5135255	7	3.6	7	100	0	50	60	12	0	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5136478--5136508	11	2.8	11	95	0	53	48	3	29	19	1.64
5136405--5136505	50	2.0	50	82	3	123	47	0	24	26	1.58
5150112--5150152	18	2.3	18	91	0	64	39	21	21	17	1.93
5151014--5151046	13	2.6	13	90	4	50	60	0	6	33	1.21
5151157--5151210	22	2.5	22	81	0	63	62	14	9	12	1.53
5159232--5159364	63	2.1	64	80	6	155	23	28	27	21	1.99
5162443--5162479	3	12.3	3	100	0	74	32	0	35	32	1.58
5169381--5169423	21	2.0	21	95	0	77	27	0	37	34	1.57
5169404--5169436	16	2.1	16	94	0	57	33	0	36	30	1.58
5169415--5169509	45	2.1	44	88	1	136	34	5	27	32	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207