genome.fa.s19.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  130  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39793398--39793467	6	11.5	6	75	13	63	75	1	5	17	1.06
39793398--39793467	17	3.8	17	79	11	68	75	1	5	17	1.06
39793398--39793467	29	2.6	27	80	17	74	75	1	5	17	1.06
39799135--39799186	23	2.3	23	96	0	95	28	19	17	34	1.94
39802122--39802672	275	2.0	275	97	0	1048	35	17	16	30	1.92
39803635--39803698	31	2.1	31	100	0	128	21	21	18	37	1.94
39807620--39807694	30	2.5	30	84	0	96	24	25	10	40	1.87
39807649--39807849	60	3.4	60	71	8	167	22	28	13	35	1.93
39807738--39807845	30	3.6	30	77	6	96	23	28	13	34	1.93
39807649--39807849	90	2.2	89	80	6	210	22	28	13	35	1.93
39815293--39815371	30	2.6	30	77	0	86	17	25	11	45	1.82
39815351--39815425	30	2.5	30	82	0	87	25	30	10	33	1.90
39828562--39828612	25	2.0	25	88	0	75	31	13	29	25	1.94
39831102--39831168	32	2.2	30	79	17	75	56	5	0	37	1.24
39831101--39831168	30	2.3	29	80	16	77	55	7	0	36	1.28
39840198--39840717	47	11.1	47	94	0	817	32	9	29	28	1.88
39840836--39840914	37	2.1	37	90	0	122	24	18	31	25	1.98
39849751--39849793	11	3.9	11	81	0	50	79	2	11	6	1.02
39849749--39849794	22	2.1	22	87	0	65	76	2	15	6	1.09
39850182--39850484	42	7.3	42	85	1	403	35	24	18	21	1.95
39850889--39850946	15	3.9	14	77	22	57	0	10	6	82	0.83
39856870--39856907	18	2.1	18	85	9	51	44	7	15	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39861529--39861553	12	2.1	12	100	0	50	24	24	0	52	1.48
39866080--39866131	19	2.7	18	77	11	59	42	11	3	42	1.59
39866469--39866497	3	9.7	3	100	0	58	0	0	31	68	0.89
39874338--39874383	19	2.2	21	85	11	60	54	2	0	43	1.12
39874300--39874426	58	2.2	58	88	2	184	51	3	3	41	1.33
39874714--39874756	20	2.2	20	91	4	70	9	16	25	48	1.75
39892625--39892709	43	2.0	43	83	0	107	24	12	27	35	1.92
39893032--39893085	19	2.8	19	85	0	81	38	11	16	33	1.84
39898390--39898441	24	2.2	24	89	0	77	38	1	5	53	1.36
39898407--39898453	24	2.0	24	87	8	69	40	4	10	44	1.59
39898650--39898695	24	1.9	24	90	0	74	50	6	2	41	1.40
39899075--39899133	27	2.2	27	84	6	75	42	1	1	54	1.20
39899340--39899370	15	2.1	15	93	0	53	58	6	0	35	1.24
39899505--39899545	21	1.9	21	90	5	64	39	4	9	46	1.58
39899728--39899881	40	3.8	39	75	10	141	36	17	22	24	1.95
39899924--39900029	32	3.0	32	78	21	131	17	23	32	26	1.97
39899956--39900064	41	2.7	41	95	2	193	18	22	30	29	1.97
39900282--39900359	21	3.6	22	72	8	72	26	0	34	38	1.57
39900287--39900335	14	3.4	14	80	5	62	26	0	34	38	1.57
39900354--39900387	15	2.3	15	89	0	50	14	0	50	35	1.44
39900330--39900393	22	3.0	21	76	19	60	20	0	42	37	1.52
39900460--39900503	12	3.8	12	84	3	63	27	0	2	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39900459--39900510	24	2.2	23	82	3	68	32	0	1	65	1.04
39900711--39900751	21	2.0	21	95	0	73	26	0	43	29	1.55
39900708--39900761	21	2.5	20	82	11	72	24	0	42	33	1.55
39905325--39905597	43	6.4	43	92	0	395	27	19	29	23	1.98
39905667--39905710	21	2.1	21	91	0	70	38	27	20	13	1.90
39908771--39909115	129	2.6	131	82	1	408	38	13	16	31	1.87
39910468--39910504	18	2.1	18	89	0	56	29	10	10	48	1.72
39915857--39915978	23	5.3	23	85	3	174	22	19	26	31	1.98
39915857--39915978	46	2.7	46	92	0	199	22	19	26	31	1.98
39919640--39919699	30	2.0	30	100	0	120	30	43	0	26	1.55
39940797--39940831	8	4.2	8	85	7	52	45	2	0	51	1.16
39942016--39942692	114	5.9	114	87	3	898	26	22	23	28	1.99
39942016--39942692	231	2.9	228	87	3	941	26	22	23	28	1.99
39943310--39943379	14	4.9	14	74	8	52	24	0	40	35	1.56
39943452--39943485	7	4.9	7	88	0	50	17	0	50	32	1.47
39943448--39943485	14	2.7	14	87	0	58	21	0	44	34	1.52
39943469--39943731	90	3.0	89	86	3	359	28	1	26	42	1.66
39944124--39944310	84	2.2	84	82	3	207	30	16	20	32	1.95
39944193--39944350	84	1.9	78	88	7	235	28	17	20	34	1.95
39945835--39945863	12	2.4	12	100	0	58	48	10	0	41	1.37
39945859--39946202	9	39.8	9	66	20	148	47	18	1	31	1.59
39945859--39946210	25	14.0	25	67	21	105	47	19	1	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39945922--39946198	41	6.9	41	72	17	165	47	18	1	32	1.59
39945983--39946198	16	13.1	16	68	21	117	48	18	1	31	1.57
39945983--39946083	44	2.2	44	96	3	184	51	16	0	31	1.45
39946395--39946458	25	2.5	26	89	2	103	43	15	1	39	1.56
39948142--39948367	43	5.3	43	87	3	294	28	19	28	23	1.98
39951331--39951380	26	1.9	26	87	0	73	54	4	6	36	1.44
39951331--39951380	13	3.8	13	78	0	55	54	4	6	36	1.44
39954348--39954408	25	2.5	26	71	7	65	24	3	3	68	1.19
39958225--39958258	17	1.9	18	88	5	52	55	20	2	20	1.56
39959846--39959882	12	3.2	12	88	11	51	16	0	0	83	0.64
39960205--39960322	41	2.7	44	80	6	143	22	27	20	29	1.98
39960301--39960402	44	2.4	42	85	8	127	28	20	21	29	1.98
39960447--39960553	42	2.5	44	82	8	121	28	23	19	28	1.98
39960131--39960781	223	2.9	225	80	4	631	29	20	18	31	1.97
39960653--39961000	92	3.9	90	71	9	253	30	20	16	32	1.95
39960344--39961183	407	2.1	405	88	1	1220	29	20	17	32	1.95
39960581--39960960	184	2.1	179	89	2	571	30	19	17	32	1.95
39960837--39961449	45	13.8	43	67	14	132	30	20	16	33	1.94
39960706--39961456	223	3.4	222	86	1	1018	30	20	16	32	1.95
39962679--39962806	45	2.7	45	81	6	148	13	24	21	41	1.88
39963767--39963819	11	4.8	11	77	9	54	7	20	0	71	1.10
39968638--39968671	17	1.9	18	88	5	52	55	20	2	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39969146--39969185	21	1.9	21	84	0	53	62	2	2	32	1.22
39971016--39971066	10	4.3	12	78	16	54	5	15	1	76	1.07
39990311--39990398	27	3.3	27	79	9	108	17	19	18	45	1.86
39999294--39999451	72	2.2	72	84	4	212	29	18	22	28	1.98
39999355--39999568	114	1.9	114	86	2	306	27	19	25	28	1.99
39999468--39999627	73	2.2	74	85	3	225	28	19	23	28	1.98
39999292--40000078	187	4.2	187	83	5	906	28	19	24	26	1.99
39999655--39999826	73	2.4	73	87	0	245	28	18	26	27	1.98
39999725--39999943	114	1.9	114	89	3	343	27	18	27	26	1.98
39999870--40000027	84	1.9	84	85	2	219	27	20	24	27	1.99
40000368--40000415	22	2.2	21	77	3	51	22	0	29	47	1.51
40000457--40000496	21	2.0	20	95	5	71	12	0	30	57	1.36
40000762--40000823	21	3.0	20	83	9	70	25	0	38	35	1.56
40001492--40001560	16	4.2	16	92	3	120	24	1	36	37	1.65
40001492--40001560	33	2.1	32	94	2	120	24	1	36	37	1.65
40001771--40001825	15	3.4	16	80	16	53	54	1	0	43	1.10
40001777--40001825	16	2.9	18	80	20	61	55	0	0	44	0.99
40001678--40002005	156	2.1	156	97	0	611	42	3	6	46	1.47
40001947--40001981	18	2.0	17	88	5	52	54	0	0	45	0.99
40008801--40009068	43	6.2	44	78	7	171	22	19	31	27	1.97
40008801--40009004	86	2.4	85	79	4	205	22	19	31	26	1.98
40008862--40009070	85	2.4	84	79	8	199	23	19	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40016971--40017018	16	3.1	15	80	16	53	77	0	4	18	0.93
40019843--40019940	41	2.4	41	89	0	142	31	21	19	27	1.97
40020152--40020338	65	3.0	61	72	14	148	40	16	7	36	1.76
40028232--40028329	41	2.4	41	91	0	151	32	21	18	27	1.96
40035503--40035533	15	2.1	15	93	0	53	41	12	6	38	1.69
40035542--40035605	27	2.4	27	81	0	74	23	23	14	39	1.91
40035772--40035951	26	6.8	26	68	13	82	32	22	13	32	1.92
40035772--40035882	26	4.2	26	79	6	91	32	23	14	29	1.94
40035815--40035961	53	2.8	52	76	11	154	34	21	14	30	1.93
40041589--40041643	27	2.0	27	89	0	83	30	18	16	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207