genome.fa.s19.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  165  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50833297--50833366	8	8.4	8	76	17	63	60	5	2	31	1.35
50833296--50833367	18	4.2	17	73	16	60	61	5	2	30	1.33
50842128--50842158	16	1.9	16	100	0	62	58	3	0	38	1.15
50842173--50842212	16	2.5	16	87	0	53	42	0	0	57	0.98
50842341--50842392	9	5.3	9	77	22	52	32	1	1	63	1.16
50842342--50842416	32	2.4	31	86	6	107	29	2	1	66	1.13
50842733--50842939	103	2.0	103	97	0	387	34	10	23	30	1.89
50844825--50844897	38	1.9	38	86	8	105	2	28	2	65	1.20
50844840--50844901	20	3.2	19	71	15	56	3	25	3	67	1.20
50847057--50847109	23	2.3	23	86	0	88	20	18	26	33	1.96
50852944--50853012	21	3.2	21	77	10	68	72	0	24	2	0.98
50852952--50853001	20	2.5	19	81	15	57	70	0	26	4	1.05
50865517--50865560	22	1.9	24	86	9	65	18	11	54	15	1.70
50876444--50876745	145	2.0	153	81	7	352	32	0	14	52	1.47
50880331--50880364	15	2.3	15	90	5	52	38	0	8	52	1.33
50887351--50887381	15	2.0	16	93	6	55	25	0	45	29	1.54
50896618--50896694	34	2.3	34	93	0	127	41	0	40	18	1.50
50896632--50896688	19	3.2	19	61	19	50	38	0	42	19	1.51
50905171--50905203	16	2.0	17	94	5	59	6	18	3	72	1.18
50911713--50911746	15	2.3	15	90	5	52	73	0	0	26	0.83
50913422--50913461	17	2.5	15	84	11	53	70	5	2	22	1.19
50913422--50913502	16	5.3	15	76	14	69	69	3	1	25	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50920344--50920387	21	2.1	21	83	8	54	34	0	13	52	1.41
50925010--50925233	103	2.2	105	87	3	321	39	13	15	31	1.86
50925242--50925449	109	1.9	107	86	9	296	34	16	12	35	1.88
50926683--50926737	29	1.9	29	85	10	78	23	25	21	29	1.99
50930798--50930845	21	2.2	23	85	7	64	27	8	0	64	1.22
50933733--50933772	6	6.7	6	100	0	80	15	52	0	32	1.43
50937807--50937849	21	2.0	21	100	0	86	58	9	0	32	1.30
50943953--50944219	124	2.1	125	84	2	349	30	14	15	39	1.88
50944315--50944427	34	3.4	33	80	6	131	44	15	0	39	1.47
50949729--50949773	21	2.0	24	83	12	60	53	8	33	4	1.52
50951519--50952166	126	5.2	126	86	1	870	38	15	16	28	1.90
50951518--50952166	250	2.6	252	85	3	860	38	15	16	28	1.90
50952546--50952578	16	2.1	16	100	0	66	27	30	12	30	1.92
50955697--50955736	18	2.2	18	90	0	62	42	10	30	17	1.82
50967759--50967813	27	2.0	27	82	10	67	47	1	9	41	1.46
50974324--50974526	45	4.5	45	81	3	239	47	14	18	20	1.83
50977493--50977529	16	2.3	16	90	0	65	21	0	29	48	1.50
50996843--50996975	40	3.3	40	93	0	221	27	15	20	37	1.92
51000038--51000583	273	2.0	271	93	2	934	44	11	7	35	1.70
51002024--51002049	13	2.0	13	100	0	52	7	0	23	69	1.14
51003008--51003343	114	2.9	114	98	0	636	41	3	14	40	1.63
51003828--51004056	41	5.6	41	88	1	325	28	19	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51003834--51004056	82	2.7	81	93	2	367	28	18	27	24	1.98
51010653--51010988	114	2.9	114	98	0	636	41	3	14	40	1.63
51011475--51011660	41	4.5	41	86	2	239	29	18	27	24	1.98
51014620--51014690	3	23.7	3	97	0	133	69	0	30	0	0.89
51030717--51030794	39	2.0	39	100	0	156	41	10	12	35	1.77
51032045--51032176	55	2.4	55	87	2	194	22	21	32	22	1.98
51046526--51046560	6	5.7	6	96	3	61	0	31	0	68	0.90
51050428--51050569	22	6.3	22	81	11	171	44	16	14	24	1.85
51050417--51050547	47	2.9	44	81	9	158	45	16	12	25	1.82
51050926--51050964	20	2.0	20	89	0	60	41	12	5	41	1.65
51056003--51056029	12	2.2	12	100	0	54	22	18	14	44	1.86
51058949--51058991	22	2.0	22	90	0	68	37	13	13	34	1.85
51064435--51064470	18	2.0	18	88	0	54	55	22	8	13	1.65
51071647--51071692	18	2.6	18	89	6	67	28	8	34	28	1.87
51075842--51075877	19	1.9	19	94	5	65	5	16	5	72	1.23
51083761--51083796	11	3.3	11	92	0	54	2	11	0	86	0.68
51085557--51085595	13	2.9	13	81	7	51	51	5	2	41	1.38
51092274--51092308	5	7.0	5	93	0	52	45	14	20	20	1.85
51097901--51097936	6	6.0	6	100	0	72	16	16	0	66	1.25
51102360--51102428	26	2.7	26	86	4	88	37	18	7	36	1.79
51110645--51112273	407	4.0	407	96	0	2857	34	7	17	40	1.78
51110645--51112273	819	2.0	816	94	1	2861	34	7	17	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51113311--51113400	28	3.2	28	66	9	76	23	17	22	36	1.95
51115047--51115215	81	2.1	81	90	0	266	44	5	13	37	1.66
51115914--51116215	91	3.3	91	76	3	311	32	6	21	40	1.78
51115912--51116240	182	1.8	182	84	2	455	31	6	21	39	1.80
51117211--51117244	17	1.9	18	88	5	52	82	2	2	11	0.89
51117977--51118682	351	2.0	351	100	0	1412	31	24	20	23	1.98
51122255--51122317	4	14.8	4	77	12	54	69	4	6	19	1.28
51122255--51122317	13	4.9	12	74	14	54	69	4	6	19	1.28
51122255--51122317	17	3.6	17	77	8	65	69	4	6	19	1.28
51136529--51136571	20	2.1	21	95	4	79	23	13	2	60	1.45
51137408--51137467	31	1.9	32	86	3	86	38	3	0	58	1.15
51138187--51138235	21	2.6	18	81	18	55	61	2	0	36	1.08
51138933--51138978	21	2.2	20	84	3	56	50	0	0	50	1.00
51141235--51141321	3	28.3	3	75	11	70	32	3	3	60	1.30
51147836--51147887	25	2.0	26	88	7	79	21	0	11	67	1.22
51174089--51174504	131	3.2	131	88	5	608	30	20	24	24	1.99
51174515--51174556	21	2.0	21	95	0	75	35	4	35	23	1.76
51176279--51176307	12	2.4	12	100	0	58	34	6	0	58	1.25
51176285--51176328	21	2.0	22	83	12	56	25	11	2	61	1.41
51177514--51177556	14	3.0	14	80	16	52	30	0	9	60	1.28
51180753--51180787	15	2.3	16	85	14	56	71	0	28	0	0.86
51189310--51189359	17	3.2	17	72	21	63	56	22	10	12	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51191401--51191445	24	1.9	23	86	13	65	46	22	13	17	1.83
51192537--51192589	25	2.2	24	89	3	79	30	15	26	28	1.96
51193025--51193050	13	2.0	13	100	0	52	38	23	0	38	1.55
51200279--51200406	43	3.0	41	75	2	112	28	14	25	32	1.94
51207631--51207670	14	2.9	14	84	0	53	42	0	5	52	1.23
51217814--51218129	41	7.7	41	92	0	497	22	28	20	28	1.99
51255445--51255535	42	2.2	42	82	7	107	17	31	32	17	1.94
51255630--51255855	124	1.8	124	90	3	366	28	15	22	33	1.94
51258884--51259101	116	1.9	116	96	0	400	42	9	9	38	1.70
51259107--51259901	23	33.7	23	75	17	617	27	1	25	46	1.61
51259178--51259280	50	2.1	51	90	3	165	27	0	26	45	1.60
51259225--51259266	21	2.0	20	90	4	66	28	0	26	45	1.54
51259098--51259312	117	1.8	118	88	5	328	29	1	23	45	1.63
51259151--51259835	73	9.7	72	80	13	556	27	1	25	45	1.61
51259478--51259611	28	5.2	28	80	15	157	27	0	25	46	1.58
51259227--51259835	308	2.0	298	89	6	938	27	1	25	45	1.61
51259694--51259798	50	2.1	51	96	1	194	23	0	30	45	1.53
51259794--51259899	53	2.0	53	81	0	122	23	2	25	48	1.65
51259907--51259992	43	2.0	45	90	4	140	51	12	0	36	1.40
51260415--51260449	18	1.9	18	94	0	61	34	8	31	25	1.86
51261101--51261125	7	3.6	7	100	0	50	60	12	0	28	1.32
51262355--51262405	22	2.3	22	96	0	93	41	0	31	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51262268--51262383	51	2.3	51	95	0	205	46	0	25	28	1.53
51262763--51262801	16	2.4	16	86	4	51	48	2	10	38	1.51
51266383--51266647	114	2.3	114	76	3	262	40	19	10	29	1.85
51270294--51270338	23	2.0	22	83	12	56	28	4	24	42	1.74
51277931--51278317	27	14.4	27	83	0	391	32	18	22	25	1.97
51278336--51278468	24	5.5	24	79	0	113	30	7	18	43	1.78
51278616--51278800	32	5.8	32	83	0	217	25	19	17	37	1.94
51278618--51278800	96	1.9	96	87	0	267	25	19	17	37	1.94
51278807--51278852	22	2.1	22	83	0	56	17	17	17	47	1.83
51280857--51280978	33	3.5	36	81	7	144	23	16	17	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207