genome.fa.s19.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  123  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37335936--37335971	18	2.0	18	100	0	72	5	50	5	38	1.49
37338644--37338689	24	2.0	24	82	4	58	19	15	4	60	1.51
37338943--37339011	36	2.0	34	88	8	104	28	27	26	17	1.97
37338943--37339033	35	2.6	36	87	3	139	30	24	25	19	1.98
37345581--37345614	16	2.1	17	88	5	52	38	5	20	35	1.77
37347155--37347182	12	2.3	12	100	0	56	28	42	21	7	1.79
37349414--37349467	27	2.0	27	82	10	65	37	1	11	50	1.49
37366708--37366970	131	2.0	131	98	0	508	41	12	9	36	1.76
37372898--37372945	18	2.6	18	90	6	69	22	25	0	52	1.48
37373652--37373690	20	2.0	20	84	0	51	33	17	0	48	1.48
37375758--37376003	43	5.7	43	86	3	282	41	24	15	18	1.90
37375758--37376009	129	2.0	129	88	0	378	41	24	15	18	1.90
37375762--37376003	86	2.8	86	85	0	340	40	24	16	18	1.90
37379392--37379450	25	2.4	23	83	10	73	16	22	20	40	1.91
37388092--37388133	21	2.0	21	86	4	59	42	0	16	40	1.48
37388732--37388782	24	2.1	24	81	0	57	25	21	9	43	1.83
37388772--37388840	25	2.7	25	73	13	68	20	23	18	37	1.94
37392141--37392219	37	2.1	37	90	0	122	25	31	18	24	1.98
37392338--37392795	47	9.7	47	95	0	783	28	29	8	32	1.88
37397093--37397161	18	4.3	18	66	27	64	50	0	1	47	1.09
37397104--37397163	28	2.1	28	90	0	93	46	0	1	51	1.10
37399200--37399262	32	2.0	32	100	0	126	39	15	12	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37403782--37403817	3	12.0	3	93	0	63	63	0	33	2	1.08
37407901--37407970	36	1.9	36	86	11	99	22	12	35	28	1.91
37435634--37435674	6	6.5	6	83	10	55	65	0	14	19	1.26
37435633--37435675	13	3.3	13	84	12	61	67	0	13	18	1.23
37435636--37435673	20	1.9	19	89	5	58	63	0	15	21	1.31
37442761--37442809	22	2.2	22	78	7	55	18	20	40	20	1.91
37442859--37442930	26	2.8	26	86	0	99	34	18	22	25	1.96
37443735--37443794	23	2.6	22	73	21	52	60	15	3	21	1.49
37444008--37444102	49	1.9	49	85	4	129	37	15	22	24	1.93
37444170--37444266	35	2.7	34	78	10	97	40	19	17	22	1.92
37450402--37450472	6	11.7	6	77	3	61	73	1	5	19	1.11
37462622--37462715	25	3.8	25	88	0	98	22	25	21	30	1.98
37473468--37473506	20	1.9	20	84	5	51	69	5	17	7	1.32
37480995--37481021	12	2.2	12	100	0	54	22	33	44	0	1.53
37485236--37485260	13	1.9	13	100	0	50	0	20	48	32	1.50
37495674--37495725	3	17.3	3	91	0	86	71	0	28	0	0.87
37496130--37496163	17	2.0	17	94	0	59	23	11	2	61	1.43
37497106--37497172	34	1.9	35	96	3	127	34	2	14	47	1.60
37500025--37500067	21	2.0	21	86	0	59	37	18	2	41	1.63
37518250--37518680	47	9.1	47	92	2	664	32	9	29	28	1.88
37518250--37518680	96	4.5	96	92	1	690	32	9	29	28	1.88
37518250--37518680	190	2.3	190	93	0	736	32	9	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37518250--37518680	143	3.0	142	92	2	679	32	9	29	28	1.88
37518799--37518877	37	2.1	37	88	4	115	25	18	30	25	1.98
37522118--37522434	72	4.4	72	84	3	399	24	5	15	54	1.62
37538213--37538400	51	3.8	48	80	4	187	23	17	29	29	1.97
37538213--37538400	102	1.9	101	86	3	270	23	17	29	29	1.97
37538396--37538494	46	2.2	43	82	12	119	23	18	26	32	1.97
37538618--37538649	16	2.0	16	93	0	55	59	0	15	25	1.36
37541376--37541476	47	2.1	47	81	3	114	25	15	27	30	1.96
37544242--37544428	101	1.8	102	89	3	270	24	17	27	31	1.97
37544242--37544426	51	3.7	50	80	6	196	24	17	27	31	1.97
37544347--37544428	26	3.2	26	66	27	75	24	14	28	32	1.94
37544248--37544434	102	1.8	101	89	3	277	24	17	28	30	1.97
37544652--37544683	16	2.0	16	93	0	55	59	0	15	25	1.36
37545686--37545760	20	3.8	20	89	0	105	24	26	17	32	1.97
37547977--37548154	27	6.6	27	83	3	205	26	15	28	29	1.96
37547978--37548133	82	1.9	81	88	3	233	26	15	28	29	1.96
37547974--37548154	82	2.2	81	83	2	229	27	15	27	29	1.96
37551105--37551159	11	5.0	11	82	8	67	72	3	5	18	1.18
37551204--37551250	24	1.9	25	86	4	69	76	4	8	10	1.13
37552116--37552154	15	2.4	15	87	12	51	66	2	20	10	1.33
37553635--37553689	20	2.8	20	88	0	83	25	29	16	29	1.97
37554323--37554426	54	1.9	55	88	5	158	41	14	21	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37558684--37558728	12	3.8	12	82	8	56	68	6	4	20	1.29
37558694--37558739	14	3.5	14	82	11	53	69	6	6	17	1.32
37558682--37558740	13	4.8	12	75	21	52	67	6	6	18	1.36
37563237--37563283	23	2.1	23	84	7	62	51	12	4	31	1.59
37568603--37568642	15	2.7	15	96	0	71	17	10	5	67	1.37
37568682--37568726	11	4.0	11	94	2	72	20	0	8	71	1.12
37568681--37568723	12	3.6	12	90	9	70	16	0	6	76	0.99
37580443--37580509	20	3.4	19	77	18	75	23	26	11	37	1.90
37580472--37580513	10	4.2	10	84	9	59	21	23	11	42	1.86
37585758--37585804	23	2.1	23	84	7	62	51	12	4	31	1.59
37588958--37588990	12	2.8	12	100	0	66	81	6	0	12	0.85
37590004--37590109	48	2.2	47	85	9	135	59	1	24	14	1.45
37597187--37597220	14	2.4	14	100	0	68	17	11	5	64	1.45
37597263--37597295	13	2.5	13	100	0	66	12	0	6	81	0.85
37598287--37598333	23	2.1	23	84	7	62	51	12	4	31	1.59
37605964--37605992	9	3.0	10	90	10	51	51	10	20	17	1.74
37605964--37606001	19	1.9	19	89	5	58	52	13	18	15	1.74
37608717--37608792	34	2.2	34	95	0	134	43	14	6	35	1.71
37608783--37608809	9	3.0	9	100	0	54	55	11	0	33	1.35
37610695--37610732	6	6.3	6	87	0	58	5	15	0	78	0.91
37610671--37610732	24	2.6	24	81	0	70	8	17	4	69	1.31
37610700--37610751	18	2.9	18	88	5	70	7	19	0	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37611714--37611750	4	9.8	4	88	11	60	21	0	0	78	0.75
37611713--37611752	18	2.2	18	100	0	80	20	0	0	80	0.72
37611718--37611746	14	2.1	14	100	0	58	20	0	0	79	0.74
37613368--37613419	26	2.0	26	96	0	95	13	23	34	28	1.92
37613290--37613659	102	3.6	105	93	3	608	19	20	30	30	1.97
37615352--37615421	30	2.3	30	100	0	140	38	15	10	35	1.81
37615369--37615433	30	2.2	30	83	5	78	35	16	12	35	1.87
37625342--37625451	34	3.2	34	94	0	193	40	12	10	36	1.77
37626024--37626133	6	18.0	6	66	9	53	7	19	2	70	1.22
37626074--37626133	24	2.5	24	88	0	84	6	18	1	73	1.14
37628411--37628450	20	2.0	20	90	0	62	35	15	25	25	1.94
37631320--37631366	19	2.4	20	79	13	62	25	25	12	36	1.92
37632965--37633044	28	2.8	29	75	17	78	60	3	27	8	1.44
37633006--37633047	19	2.3	19	87	4	59	64	4	23	7	1.38
37644206--37644258	20	2.7	20	84	0	79	39	15	22	22	1.91
37646383--37646433	20	2.5	21	87	9	79	27	17	29	25	1.98
37649857--37649890	13	2.8	12	90	4	50	20	2	2	73	1.09
37651217--37651268	25	2.0	25	82	17	63	63	13	1	21	1.39
37651376--37651424	20	2.4	19	77	12	53	42	16	18	22	1.88
37651382--37651431	20	2.5	19	75	9	55	38	16	20	26	1.92
37661735--37661981	25	9.9	25	78	3	210	26	12	22	38	1.89
37661735--37661985	50	5.0	50	82	0	261	27	11	22	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37661769--37661981	75	2.8	75	84	1	284	27	12	21	38	1.90
37661914--37661998	25	3.4	24	75	13	82	29	12	18	38	1.88
37665146--37665188	22	1.9	23	90	4	70	37	32	4	25	1.77
37670890--37670932	22	1.9	23	90	4	70	37	32	4	25	1.77
37672581--37672645	20	3.3	19	73	16	51	38	16	21	23	1.93
37672576--37672645	30	2.3	29	83	11	88	40	17	20	22	1.92
37681249--37681282	18	1.9	17	88	5	50	61	2	11	23	1.43
37682307--37682371	17	3.9	17	75	11	55	50	0	3	46	1.17
37682417--37682450	16	2.1	16	88	0	50	32	2	8	55	1.45
37685329--37685505	27	6.6	27	86	0	228	26	20	9	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207