genome.fa.s19.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  38  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11002021--11002061	22	1.9	22	90	5	66	24	14	26	34	1.94
11002637--11002696	20	3.0	20	80	4	59	31	26	8	33	1.86
11004946--11005008	30	2.1	30	96	0	117	55	14	4	25	1.58
11005046--11005093	22	2.1	23	81	11	55	62	4	14	18	1.47
11007729--11007758	15	2.0	15	93	0	51	30	0	0	70	0.88
11018181--11018212	15	2.1	16	94	5	57	43	0	0	56	0.99
11018749--11018803	26	2.1	27	83	10	69	65	1	5	27	1.25
11018748--11018812	22	2.7	23	80	19	64	64	1	6	27	1.26
11023334--11023392	20	3.0	20	85	7	77	45	28	3	22	1.68
11026614--11026670	30	1.9	30	96	0	105	26	12	14	47	1.79
11030922--11031145	44	5.1	44	77	0	216	33	17	20	29	1.95
11031679--11031717	21	1.9	20	84	5	51	53	5	25	15	1.62
11032681--11032808	60	2.2	60	81	6	147	32	8	1	57	1.39
11032702--11032826	60	2.1	60	86	0	169	31	8	1	58	1.38
11032753--11033178	69	6.1	67	77	10	306	29	7	2	60	1.37
11032816--11033113	70	4.2	71	78	6	198	28	7	3	61	1.37
11032868--11032906	20	1.9	20	89	5	60	28	5	0	66	1.12
11032753--11033175	140	3.0	141	79	9	377	29	7	2	60	1.37
11042844--11042984	41	3.4	41	73	7	133	24	28	24	22	2.00
11042868--11043020	83	1.8	83	90	2	245	23	26	27	22	2.00
11043741--11043771	5	6.2	5	100	0	62	80	0	0	19	0.71
11051636--11052649	336	3.0	336	94	0	1744	30	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11057231--11057401	40	4.3	40	87	0	243	35	29	19	15	1.93
11058485--11058524	21	1.9	20	85	10	53	50	7	2	40	1.44
11062791--11062852	32	1.9	32	96	0	115	30	30	0	38	1.58
11064009--11064069	29	2.1	29	93	0	104	40	4	8	45	1.55
11076012--11076045	3	11.3	3	100	0	68	35	0	0	64	0.94
11076241--11076278	19	2.0	19	100	0	76	42	21	0	36	1.53
11080536--11080575	20	2.0	20	90	0	62	27	10	12	50	1.72
11080522--11080587	34	1.9	35	90	3	107	31	9	13	45	1.75
11081378--11081425	20	2.3	21	82	13	64	22	4	2	70	1.15
11081378--11081426	21	2.4	20	86	10	64	24	4	2	69	1.17
11081392--11081431	20	2.0	21	90	5	64	25	5	2	67	1.23
11082274--11082319	24	1.9	24	90	0	74	36	4	8	50	1.53
11084404--11084455	24	2.2	24	100	0	104	7	3	26	61	1.41
11088883--11088952	29	2.4	29	83	4	79	28	27	7	37	1.83
11102153--11102292	40	3.5	40	76	13	128	30	23	19	26	1.98
11102158--11102293	41	3.4	41	75	14	133	32	24	18	25	1.97
11104054--11104096	15	2.7	16	82	17	54	20	4	11	62	1.46
11109116--11109228	21	5.4	21	62	12	61	32	14	25	27	1.94
11109078--11109246	42	4.0	42	91	0	257	30	13	29	26	1.94
11111825--11111960	51	2.7	51	81	0	164	32	19	21	27	1.97
11112129--11112424	44	6.6	45	75	12	234	31	19	20	29	1.97
11121952--11122054	51	2.0	51	100	0	206	45	17	7	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11122005--11122110	33	3.2	34	83	10	105	42	16	8	33	1.78
11125166--11125247	26	3.0	27	75	12	87	43	1	2	52	1.22
11125301--11125351	18	3.0	18	78	18	56	49	0	0	50	1.00
11125301--11125353	15	3.2	16	82	15	56	47	0	0	52	1.00
11125314--11125355	16	2.7	15	88	7	57	52	0	0	47	1.00
11125290--11125604	156	2.0	157	95	0	569	49	5	2	42	1.41
11125457--11125491	18	2.0	17	88	5	52	45	0	0	54	0.99
11125727--11125762	16	2.2	16	100	0	72	38	30	0	30	1.58
11127625--11127666	14	3.0	14	82	0	57	28	26	19	26	1.98
11127612--11127690	28	2.8	28	78	0	77	32	22	17	26	1.96
11145975--11149144	396	8.0	396	96	0	5820	28	16	16	39	1.90
11152967--11153013	9	5.3	9	84	2	60	78	0	0	21	0.75
11152967--11153013	18	2.6	18	86	0	67	78	0	0	21	0.75
11153043--11153072	6	4.8	6	95	4	51	63	3	0	33	1.11
11155612--11155660	11	4.5	11	78	16	57	81	0	18	0	0.69
11159028--11159152	9	13.4	10	70	20	83	71	2	0	25	1.04
11159044--11159122	19	4.3	18	79	6	79	73	2	1	22	1.03
11159125--11159164	20	2.0	21	85	14	57	62	7	2	27	1.35
11159433--11159472	21	1.9	22	85	10	57	40	7	0	52	1.30
11159485--11159539	9	5.6	10	75	18	53	40	0	0	60	0.97
11159476--11159539	20	3.3	20	77	16	64	37	1	0	60	1.06
11159487--11159548	28	2.1	31	82	8	76	40	0	1	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11159679--11159847	88	1.9	88	86	4	243	37	10	18	32	1.86
11168677--11168703	3	9.0	3	100	0	54	33	0	33	33	1.58
11178684--11179117	215	2.0	214	96	0	796	36	6	15	40	1.75
11180034--11180196	45	3.6	45	83	3	184	42	15	19	22	1.88
11180034--11180197	90	1.8	90	81	2	204	42	15	19	21	1.89
11184607--11184764	85	1.9	85	89	0	244	18	15	11	54	1.70
11187289--11187343	23	2.4	23	93	0	92	45	18	21	14	1.85
11188963--11189020	30	1.9	30	89	0	89	41	3	24	31	1.71
11189338--11189579	50	4.7	50	84	4	270	27	23	28	20	1.99
11189338--11189587	100	2.4	103	85	6	337	26	23	28	21	1.99
11192088--11192139	24	2.2	24	96	0	95	36	1	7	53	1.41
11196261--11196311	25	2.1	24	79	10	59	29	0	3	66	1.09
11199284--11199350	34	1.9	35	87	3	100	32	8	11	46	1.72
11199739--11199790	21	2.5	21	100	0	104	28	30	3	36	1.75
11200238--11200280	12	3.7	11	84	9	50	53	4	0	41	1.21
11200250--11200308	12	5.0	12	75	17	52	59	1	0	38	1.08
11200263--11200316	24	2.3	23	81	15	65	62	1	0	35	1.06
11202901--11203044	34	4.2	34	77	5	173	35	22	22	18	1.96
11202883--11203079	34	5.7	34	76	7	139	31	24	24	19	1.98
11205749--11205900	62	2.3	68	73	15	156	40	25	7	25	1.82
11208112--11208157	18	2.5	19	76	16	51	67	0	4	28	1.10
11213276--11213320	20	2.3	20	80	3	56	35	6	0	57	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11218095--11218146	6	8.8	6	78	4	52	78	11	5	3	1.05
11220379--11220563	88	2.1	86	80	10	205	29	28	21	21	1.98
11220690--11221819	44	25.9	42	66	13	189	31	20	23	25	1.98
11220514--11221371	131	6.5	131	90	0	1270	30	20	22	25	1.98
11221347--11221732	131	2.9	130	79	6	307	30	19	23	25	1.98
11221524--11221770	131	1.9	131	85	5	347	32	20	22	25	1.98
11221186--11221776	175	3.4	176	85	2	771	31	19	24	25	1.98
11222031--11222234	44	4.7	43	75	7	180	28	22	22	26	1.99
11222250--11222356	36	2.8	38	73	7	92	21	23	27	28	1.99
11222411--11222578	50	3.3	50	74	8	151	32	23	20	24	1.98
11228321--11228874	49	11.3	49	74	8	385	24	20	22	33	1.97
11228327--11228895	97	5.8	97	90	1	834	24	19	22	32	1.97
11228327--11228895	195	2.9	195	90	1	856	24	19	22	32	1.97
11228327--11228895	292	1.9	294	88	2	867	24	19	22	32	1.97
11228883--11229108	90	2.6	88	82	9	264	26	21	21	30	1.98
11229034--11229638	131	4.6	131	89	1	910	25	22	20	30	1.98
11231666--11231736	14	4.8	14	71	19	54	16	4	7	71	1.24
11231653--11231729	22	3.4	22	78	16	77	16	7	6	68	1.35
11231652--11231710	26	2.5	23	83	13	75	16	10	3	69	1.30
11232599--11232664	25	2.6	25	83	9	71	60	4	15	19	1.51
11237554--11237610	28	2.0	28	96	0	105	28	17	26	28	1.98
11240353--11240378	9	2.9	9	100	0	52	42	11	0	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11240531--11240581	20	2.6	20	84	9	61	56	3	0	39	1.18
11256110--11256182	35	2.1	35	89	0	110	28	20	17	32	1.96
11257858--11257979	56	2.1	58	93	3	212	28	18	4	47	1.69
11266911--11266954	22	1.9	24	90	9	74	47	0	11	40	1.39
11267054--11267092	20	2.0	20	84	0	51	51	7	7	33	1.59
11271987--11272124	46	3.0	45	87	2	177	29	26	8	35	1.86
11279279--11279417	46	3.0	45	88	2	188	29	25	9	35	1.87
11284982--11285115	35	3.8	36	82	1	146	15	11	32	40	1.83
11285024--11285103	36	2.2	36	88	2	117	13	13	35	37	1.85
11287264--11287308	20	2.0	23	84	16	60	44	2	8	44	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207