Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  111  of  207  ( 24831 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33448077--33448114
17
2.3
17
95
4
69
81
0
7
10
0.87
33448093--33448117
13
1.9
13
100
0
50
76
0
8
16
1.02
33452598--33452662
22
2.9
22
90
2
94
33
33
4
27
1.78
33456945--33456984
18
2.2
18
86
4
53
12
27
0
60
1.33
33457069--33457102
18
1.9
18
88
5
52
11
8
2
76
1.12
33458016--33458060
13
3.6
12
85
8
63
17
8
0
73
1.08
33458023--33458066
14
3.2
14
84
15
65
25
13
0
61
1.32
33458023--33458084
27
2.3
26
75
5
61
24
16
1
58
1.47
33458104--33458146
11
3.9
11
85
8
52
11
2
9
76
1.10
33458104--33458144
12
3.6
12
87
6
50
9
2
7
80
0.99
33464456--33464499
22
2.0
22
95
0
79
34
4
36
25
1.76
33469322--33469368
21
2.2
22
84
3
60
14
25
2
57
1.49
33471559--33471600
15
2.7
15
96
3
75
14
11
0
73
1.09
33471941--33471984
22
2.0
22
90
0
70
34
2
36
27
1.70
33476722--33476762
14
2.5
17
81
18
52
58
2
9
29
1.43
33478071--33478274
92
2.2
92
87
1
302
28
17
21
31
1.96
33481310--33481364
20
2.8
20
88
0
83
25
29
16
29
1.97
33490047--33490103
29
1.9
29
82
10
71
7
28
5
59
1.45
33496561--33496669
46
2.3
47
87
1
157
31
9
10
49
1.68
33497000--33497088
31
2.9
31
93
0
142
25
23
14
35
1.93
33504199--33504244
20
2.3
20
80
0
56
30
32
13
23
1.93
33509356--33509388
13
2.5
13
95
5
57
60
6
12
21
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33512364--33512428
20
3.3
19
73
16
51
38
16
21
23
1.93
33514205--33514265
33
1.9
33
83
12
83
11
26
6
55
1.59
33514262--33514318
14
4.3
13
75
16
55
8
19
1
70
1.23
33514268--33514384
14
9.6
12
70
18
55
5
17
4
71
1.23
33515393--33515473
29
2.8
28
78
12
76
8
14
4
71
1.27
33515413--33515473
29
2.1
29
85
11
81
4
14
4
75
1.14
33515455--33515515
26
2.3
26
74
2
68
16
8
1
73
1.14
33515454--33515510
11
4.8
11
76
16
60
17
8
1
71
1.19
33515475--33515503
15
1.9
15
100
0
58
27
10
0
62
1.28
33517086--33517150
20
3.3
19
73
16
51
38
16
21
23
1.93
33525577--33525613
14
2.6
14
100
0
74
56
5
13
24
1.58
33528564--33528628
20
3.3
19
73
16
51
38
16
21
23
1.93
33530401--33530463
33
1.9
33
84
12
85
12
25
6
55
1.60
33530461--33530516
21
2.7
21
72
5
51
8
17
1
71
1.21
33530460--33530516
14
4.1
14
75
16
57
8
17
1
71
1.19
33530478--33530580
18
5.6
18
72
7
82
6
17
3
71
1.23
33530478--33530584
6
17.7
6
68
7
65
6
17
3
71
1.22
33533303--33533367
20
3.3
19
73
16
51
38
16
21
23
1.93
33537207--33537245
17
2.4
16
86
4
51
87
7
2
2
0.73
33557981--33558024
22
2.0
22
95
0
79
25
36
4
34
1.76
33558762--33558807
20
2.3
20
80
0
56
30
32
13
23
1.93
33560363--33560396
12
2.8
12
91
8
52
85
2
8
2
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33560354--33560378
9
2.8
9
100
0
50
84
0
8
8
0.79
33563226--33563272
20
2.3
20
81
0
58
29
34
12
23
1.92
33565230--33565269
21
1.9
21
85
10
55
10
20
0
70
1.16
33567404--33567428
12
2.1
12
100
0
50
24
8
0
68
1.16
33567690--33567809
22
5.4
22
75
4
87
25
3
32
39
1.72
33567699--33567828
45
2.9
44
86
5
163
25
3
32
38
1.74
33567721--33567805
23
3.7
23
77
3
91
23
4
34
37
1.76
33568246--33568307
31
2.0
31
100
0
124
38
19
19
22
1.93
33573421--33573467
23
2.1
23
84
7
62
51
12
4
31
1.59
33577455--33577509
20
2.8
20
88
0
83
25
29
16
29
1.97
33580462--33580523
10
5.9
10
74
10
52
33
32
3
30
1.74
33580462--33580524
21
3.0
21
88
2
90
33
33
3
30
1.74
33581241--33581341
52
1.9
52
93
0
175
27
17
21
32
1.96
33584131--33584174
11
3.9
11
94
5
79
72
9
0
18
1.10
33584134--33584179
12
3.8
12
91
8
76
73
6
2
17
1.14
33584131--33584179
23
2.1
24
96
3
91
69
8
2
20
1.24
33584217--33584272
16
3.6
16
83
9
80
64
3
12
19
1.42
33584221--33584272
15
3.6
14
87
7
77
65
3
11
19
1.40
33585451--33585852
200
2.0
200
99
0
786
33
14
19
32
1.92
33592225--33592276
23
2.3
22
75
21
54
9
23
1
65
1.32
33594393--33594440
25
1.9
25
83
8
62
52
16
14
16
1.76
33599343--33599370
11
2.5
11
100
0
56
0
0
10
89
0.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33600382--33600482
52
1.9
52
95
0
184
26
18
21
32
1.97
33603878--33603927
6
7.8
6
78
12
55
76
2
18
4
1.04
33607187--33607216
13
2.3
13
94
0
51
50
0
6
43
1.28
33609664--33609705
14
2.9
14
92
7
66
14
2
2
80
0.90
33609665--33609706
22
1.9
22
85
9
59
14
2
2
80
0.90
33610362--33610403
11
3.6
11
84
12
57
73
7
2
16
1.15
33610362--33610403
12
3.4
12
90
3
66
73
7
2
16
1.15
33611112--33611165
20
2.7
20
82
0
63
24
20
18
37
1.94
33611112--33611185
30
2.5
30
86
8
98
21
20
18
39
1.93
33611112--33611176
20
3.2
20
71
16
53
23
21
16
38
1.93
33615420--33615525
56
1.9
56
84
1
142
24
25
15
34
1.94
33615976--33616010
13
2.7
13
90
0
52
42
11
0
45
1.40
33617807--33617835
12
2.4
12
100
0
58
13
17
0
68
1.20
33618893--33618951
14
4.4
14
79
8
52
15
3
5
76
1.10
33618888--33618951
26
2.5
27
90
7
98
20
4
4
70
1.24
33618891--33618956
12
5.2
12
78
10
69
21
4
4
69
1.24
33620176--33620292
55
2.1
55
82
4
148
23
25
16
34
1.95
33620480--33620544
23
2.9
22
90
6
103
44
20
12
23
1.84
33620766--33620800
13
2.7
13
90
0
52
42
11
0
45
1.40
33622596--33622624
12
2.4
12
100
0
58
13
17
0
68
1.20
33623683--33623739
13
4.5
13
75
4
62
15
3
5
75
1.12
33623678--33623739
25
2.5
25
85
14
85
20
4
4
69
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33623678--33623739
26
2.5
26
87
7
85
20
4
4
69
1.26
33624964--33625080
55
2.1
55
82
4
148
23
25
16
34
1.95
33625268--33625332
23
2.9
22
90
6
103
44
20
12
23
1.84
33625549--33625583
13
2.7
13
90
0
52
42
11
0
45
1.40
33626851--33626905
15
3.8
14
80
7
65
74
1
21
1
1.01
33632130--33632184
15
3.8
14
80
7
65
74
1
21
1
1.01
33635944--33636014
22
3.3
21
84
9
81
70
5
12
11
1.32
33642617--33642712
30
3.2
30
76
2
104
28
28
16
27
1.97
33645387--33645457
37
1.9
37
86
11
101
76
2
18
2
1.04
33645397--33645446
6
8.2
6
83
14
50
76
2
20
2
0.99
33645507--33645537
12
2.6
12
100
0
62
45
12
16
25
1.83
33647692--33647787
30
3.2
30
76
2
104
28
28
16
27
1.97
33658087--33658146
22
2.7
23
73
19
63
66
6
0
26
1.16
33658096--33658129
4
8.0
4
90
9
50
73
2
0
23
0.97
33658892--33658949
19
2.9
20
76
7
64
5
22
3
68
1.24
33661142--33661193
12
4.2
12
72
18
52
19
9
1
69
1.26
33670072--33670118
20
2.3
20
85
0
67
29
36
12
21
1.91
33675174--33675203
15
1.9
16
93
6
53
6
16
3
73
1.18
33682353--33682387
13
2.7
13
90
0
52
45
0
11
42
1.40
33682611--33682672
23
2.7
23
90
5
90
25
11
17
45
1.82
33684220--33684280
12
5.0
12
84
4
77
70
4
6
18
1.27
33684220--33684280
25
2.5
25
86
2
79
70
4
6
18
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33685339--33685367
12
2.4
12
100
0
58
68
0
17
13
1.20
33689360--33689386
12
2.2
12
100
0
54
14
11
14
59
1.62
33692724--33692775
23
2.3
22
75
21
54
9
23
1
65
1.32
33692733--33692787
12
4.6
12
73
15
51
12
23
0
63
1.29
33692769--33692806
17
2.2
18
85
4
51
10
23
2
63
1.39
33698720--33698757
17
2.2
17
86
9
51
71
0
0
28
0.87
33699893--33699927
13
2.7
13
90
0
52
45
0
11
42
1.40
33700149--33700212
23
2.8
23
88
4
94
23
10
20
45
1.82
33706253--33706293
15
2.7
16
74
11
50
7
26
0
65
1.18
33706451--33706489
15
2.4
15
87
12
51
10
20
2
66
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207