genome.fa.s19.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  13  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4359144--4359277	37	3.6	37	78	8	146	37	5	8	47	1.59
4359216--4359277	20	3.2	20	86	4	90	38	4	8	48	1.54
4359694--4359935	43	5.7	43	87	3	332	29	28	16	24	1.97
4359694--4359942	85	2.9	85	87	5	337	29	28	16	24	1.97
4359694--4359965	42	6.4	42	82	5	273	31	28	15	24	1.95
4360028--4360061	16	2.1	16	88	0	50	55	8	0	35	1.31
4365419--4365474	22	2.6	21	77	5	58	41	35	1	21	1.64
4365895--4365928	18	1.9	17	88	5	50	58	8	2	29	1.43
4365934--4366335	41	9.7	41	82	7	377	31	28	23	16	1.96
4365947--4366311	123	2.9	122	88	4	493	32	28	23	15	1.95
4365947--4366311	82	4.4	82	88	5	470	32	28	23	15	1.95
4368807--4369133	146	2.2	147	80	5	349	36	22	14	25	1.93
4369360--4369396	19	1.9	19	94	0	65	29	29	13	27	1.94
4370623--4370950	114	2.9	112	78	4	354	27	28	21	22	1.99
4373414--4373462	15	3.3	15	83	8	55	46	6	2	44	1.39
4376672--4376715	23	2.0	22	86	13	63	54	0	4	40	1.21
4376797--4376845	18	2.7	18	84	6	64	63	2	4	30	1.24
4376780--4376836	21	2.7	21	78	13	71	63	5	3	28	1.33
4377602--4377627	10	2.6	10	100	0	52	88	0	0	11	0.52
4377854--4377897	18	2.5	18	85	3	54	6	18	34	40	1.77
4378363--4378862	89	5.7	89	84	4	640	29	23	14	32	1.94
4378363--4378861	262	1.9	263	90	2	795	29	23	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4378392--4378900	133	3.9	132	82	7	649	29	23	14	32	1.94
4378365--4378887	44	11.9	44	80	8	591	29	23	14	31	1.94
4378920--4379163	132	1.8	132	87	3	366	29	23	17	29	1.97
4379183--4380145	100	9.6	100	93	0	1624	25	24	20	29	1.99
4381391--4381432	21	2.0	21	90	9	68	14	9	0	76	1.02
4382350--4382374	7	3.6	7	100	0	50	88	0	0	12	0.53
4384027--4384306	140	2.0	140	96	0	515	43	8	10	37	1.69
4390581--4390616	14	2.5	15	90	4	56	44	44	11	0	1.39
4391591--4391636	3	15.0	3	86	4	56	34	6	0	58	1.24
4404562--4404718	50	3.1	50	76	5	174	33	21	18	26	1.96
4404401--4405124	100	7.3	100	86	3	854	32	22	21	24	1.98
4404676--4404943	50	5.4	50	68	8	204	29	25	22	23	1.99
4409328--4409380	22	2.5	21	76	11	63	56	1	0	41	1.10
4409975--4410160	20	9.3	19	70	14	83	34	2	3	59	1.27
4409975--4410046	9	7.6	9	80	10	72	30	2	2	63	1.22
4409975--4410061	29	3.0	28	75	14	88	31	3	3	62	1.29
4410116--4410231	9	12.6	9	71	19	53	28	1	5	64	1.24
4410507--4410541	18	1.9	18	100	0	70	14	5	11	68	1.37
4412832--4412920	46	1.9	46	84	8	119	25	17	23	32	1.97
4414727--4414850	40	3.1	40	82	5	160	24	21	18	35	1.96
4416223--4416248	3	8.7	3	100	0	52	0	30	0	69	0.89
4424407--4424459	22	2.2	24	78	15	58	35	3	7	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4428628--4428677	3	17.0	3	91	4	84	70	0	0	30	0.88
4434908--4434941	17	2.0	17	94	0	59	38	0	0	61	0.96
4434906--4435015	40	2.7	41	92	2	186	35	2	0	60	1.17
4435025--4435049	9	2.8	9	100	0	50	80	0	0	20	0.72
4436721--4436764	19	2.3	19	84	7	54	43	2	13	40	1.57
4436833--4436951	45	2.6	45	92	5	188	35	13	21	29	1.92
4436887--4437077	63	3.0	62	93	3	303	34	12	25	28	1.91
4438084--4438155	22	3.3	22	76	5	65	11	6	5	76	1.15
4444243--4444281	3	13.0	3	100	0	78	33	0	0	66	0.92
4444466--4444752	83	3.4	82	82	7	337	31	24	19	24	1.98
4444466--4444752	42	6.9	41	82	3	322	31	24	19	24	1.98
4444466--4444813	85	4.1	85	77	9	304	31	24	18	25	1.98
4447024--4447120	9	10.3	9	68	20	56	36	1	16	46	1.54
4447193--4447284	30	3.1	30	85	6	141	43	1	11	43	1.48
4449179--4449890	364	2.0	364	92	1	1178	35	20	14	29	1.92
4449933--4450013	24	3.2	23	80	19	99	45	8	0	45	1.34
4449957--4450000	13	3.2	13	77	22	54	52	4	0	43	1.22
4449933--4450016	28	3.2	26	79	12	91	44	8	0	47	1.33
4450438--4450471	14	2.4	14	100	0	68	35	50	0	14	1.44
4451212--4451282	33	2.2	33	84	5	90	38	26	14	21	1.91
4451250--4451696	114	3.9	114	85	3	580	28	23	22	24	1.99
4451506--4451883	186	2.0	187	88	5	570	28	23	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4451621--4451757	72	1.9	71	89	7	215	28	18	23	29	1.98
4451382--4451964	300	1.9	300	85	5	811	28	24	22	24	2.00
4451682--4451964	114	2.5	114	87	5	412	28	25	21	23	1.99
4452320--4452349	12	2.5	12	100	0	60	16	10	10	63	1.51
4455285--4455375	38	2.5	35	83	10	119	52	6	2	38	1.40
4455297--4455375	38	2.1	38	97	0	149	53	3	2	40	1.33
4457668--4457703	16	2.2	16	100	0	72	25	0	36	38	1.56
4457939--4457973	18	2.0	17	88	5	52	54	0	0	45	0.99
4457826--4458142	157	2.0	157	96	0	580	44	3	5	47	1.42
4458096--4458130	18	2.0	17	88	5	52	54	0	0	45	0.99
4459353--4459397	22	2.0	22	91	0	72	48	15	2	33	1.57
4463090--4463134	22	2.0	22	91	0	72	48	15	2	33	1.57
4465561--4465586	11	2.4	11	100	0	52	46	7	38	7	1.61
4466394--4466448	22	2.4	23	87	3	76	16	10	50	21	1.75
4466493--4466527	17	2.1	17	94	0	61	42	2	45	8	1.49
4470391--4470523	66	2.0	66	97	0	248	30	24	14	31	1.94
4471404--4471449	17	2.8	18	84	15	64	28	41	30	0	1.56
4476524--4476617	40	2.3	40	94	0	161	34	2	0	63	1.06
4476591--4476630	21	1.9	21	84	0	53	42	2	0	55	1.13
4477685--4477802	45	2.6	45	90	6	179	34	13	22	29	1.92
4477739--4477866	62	2.0	64	91	5	208	33	11	25	28	1.91
4477801--4477907	46	2.4	46	89	7	159	34	14	22	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4477694--4477907	107	2.0	107	90	1	340	35	13	22	28	1.92
4495511--4495882	119	3.0	118	82	9	424	25	20	21	32	1.98
4495631--4496749	44	25.8	43	70	10	415	25	22	21	30	1.99
4495630--4495923	129	2.3	131	86	2	396	25	20	22	31	1.98
4495640--4496224	304	1.9	301	87	2	859	24	20	23	31	1.98
4495936--4496224	128	2.2	129	88	1	429	23	20	25	30	1.99
4495936--4496296	128	2.8	129	82	3	388	24	22	22	30	1.99
4496109--4496772	218	3.1	217	87	3	899	26	24	19	29	1.99
4504214--4504493	42	6.7	42	90	2	375	32	19	21	26	1.97
4504949--4505016	21	3.2	21	89	0	100	5	38	19	36	1.76
4509158--4509370	115	1.8	116	85	3	304	38	19	15	27	1.92
4510049--4510105	20	2.8	20	78	7	62	47	33	0	19	1.50
4510145--4510171	7	3.9	7	100	0	54	44	40	0	14	1.46
4510557--4510883	114	2.9	111	79	6	264	29	23	20	26	1.99
4510669--4510963	114	2.6	114	87	1	410	29	23	21	26	1.99
4511038--4511212	73	2.4	73	84	1	208	28	24	22	25	1.99
4517171--4517213	22	1.9	23	85	4	61	34	2	6	55	1.39
4518404--4518460	28	2.0	28	86	6	78	8	8	12	70	1.35
4519126--4519167	20	2.0	21	86	4	59	21	7	4	66	1.35
4521172--4521202	4	7.8	4	100	0	62	51	22	0	25	1.48
4521680--4521752	23	3.2	23	84	3	85	12	19	16	52	1.75
4527008--4527052	23	2.0	23	100	0	90	31	17	4	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4528708--4528745	16	2.5	16	87	8	53	26	2	5	65	1.27
4531878--4532009	19	6.8	19	83	5	167	36	9	15	37	1.81
4531879--4531998	59	2.0	59	87	3	170	37	9	14	39	1.78
4532784--4532834	20	2.3	23	80	9	63	33	1	5	58	1.33
4533149--4533182	15	2.3	15	89	0	50	26	8	8	55	1.59
4533460--4533654	98	2.0	98	94	0	345	28	10	24	36	1.89
4535147--4535192	24	1.9	24	81	0	56	50	15	23	10	1.75
4537607--4537644	8	4.9	8	93	6	69	89	10	0	0	0.49
4537605--4537645	15	2.5	17	88	11	68	87	12	0	0	0.53
4537605--4537652	16	3.0	15	88	11	69	87	10	2	0	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207