genome.fa.s19.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  20  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6017053--6017090	18	2.1	19	90	5	60	26	5	7	60	1.46
6031683--6032219	109	4.9	108	93	2	868	33	18	17	30	1.94
6031683--6032219	217	2.5	217	90	5	861	33	18	17	30	1.94
6032505--6032564	15	3.9	15	70	12	50	51	1	6	40	1.38
6032782--6032823	3	14.0	3	94	0	75	66	2	0	30	1.04
6034011--6034050	21	2.0	21	85	5	55	57	0	0	42	0.98
6038059--6038116	28	2.1	28	93	0	98	39	13	13	32	1.85
6040708--6040740	3	11.7	3	87	12	52	30	0	0	69	0.88
6040708--6040740	11	2.9	11	95	4	57	30	0	0	69	0.88
6040798--6040840	12	3.5	12	82	14	52	37	9	0	53	1.33
6042215--6042266	25	2.0	26	82	10	63	46	3	7	42	1.51
6048001--6048064	26	2.6	23	77	20	67	57	1	9	31	1.40
6049766--6050232	44	10.8	44	71	10	246	24	22	21	30	1.99
6049747--6050098	127	2.8	126	84	3	384	25	22	22	29	1.99
6049856--6050226	87	4.3	88	76	7	334	24	23	22	29	1.99
6049898--6050231	173	1.9	174	88	3	512	25	23	21	29	1.99
6049856--6050246	44	9.1	44	74	9	281	24	23	21	30	1.99
6050995--6051216	108	2.1	108	82	1	275	51	7	15	26	1.69
6062606--6062669	26	2.6	23	77	20	67	57	1	9	31	1.40
6080704--6080742	19	2.1	19	85	9	53	25	5	20	48	1.70
6080704--6080741	18	2.1	19	85	5	51	26	5	21	47	1.71
6083703--6083767	32	2.1	32	97	2	123	30	9	12	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6089861--6089925	32	2.1	32	94	2	114	32	9	12	46	1.73
6090224--6090252	3	9.7	3	100	0	58	31	0	0	68	0.89
6092706--6092740	18	1.9	18	88	0	52	54	0	0	45	0.99
6093516--6093556	18	2.3	18	91	0	64	48	2	31	17	1.60
6093514--6093559	18	2.3	20	75	17	51	52	2	30	15	1.55
6098821--6098865	23	2.0	23	91	4	74	40	8	22	28	1.84
6098908--6098944	19	2.0	20	89	10	60	29	8	8	54	1.59
6115755--6115835	25	3.2	25	76	10	76	37	20	17	24	1.94
6117963--6118008	16	2.9	16	83	9	58	36	8	10	43	1.71
6118121--6118164	16	2.6	17	71	7	54	36	15	9	38	1.80
6118110--6118170	16	3.8	16	72	6	52	40	18	6	34	1.76
6118582--6118641	31	1.9	31	90	6	95	45	16	16	21	1.86
6120143--6120172	7	4.3	7	100	0	60	53	0	0	46	1.00
6127188--6127263	21	3.7	21	73	7	66	27	9	3	59	1.46
6127289--6127416	18	6.8	18	69	17	64	30	2	1	65	1.14
6127251--6127396	29	5.1	28	73	11	109	32	3	0	63	1.16
6127251--6127423	57	3.1	57	79	10	144	29	3	1	65	1.16
6127289--6127339	19	2.7	19	79	8	59	31	1	1	64	1.15
6127355--6127410	20	2.8	21	78	13	64	32	1	1	64	1.14
6127485--6127696	93	2.3	92	83	4	257	41	11	17	29	1.85
6130077--6130200	29	4.2	29	78	6	133	30	19	7	42	1.78
6130548--6130573	12	2.2	12	100	0	52	57	0	42	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6130552--6130612	15	4.1	15	89	4	79	75	0	24	0	0.80
6130567--6130612	7	6.3	7	87	9	65	80	0	19	0	0.71
6130552--6130615	29	2.3	28	83	5	76	76	0	23	0	0.79
6130720--6130762	10	4.4	10	82	5	61	86	2	9	2	0.76
6130720--6130762	20	2.2	20	91	4	70	86	2	9	2	0.76
6130920--6130992	26	2.9	25	77	18	55	79	0	20	0	0.73
6130923--6130993	32	2.2	31	87	5	97	78	0	21	0	0.74
6130927--6130986	16	3.8	16	83	14	79	78	0	21	0	0.75
6136860--6136897	16	2.4	16	82	8	51	44	0	2	52	1.14
6136954--6137016	16	4.1	16	69	19	53	42	9	0	47	1.36
6137455--6137488	17	1.9	18	88	5	52	47	11	0	41	1.40
6139575--6139608	14	2.3	15	90	5	52	58	2	2	35	1.28
6140935--6140986	19	2.7	19	75	3	59	65	3	1	28	1.21
6142344--6142381	17	2.3	17	90	4	60	71	0	0	28	0.87
6150565--6150607	6	7.2	6	91	0	68	0	18	60	20	1.36
6154201--6154253	22	2.3	23	87	9	81	43	15	11	30	1.81
6154294--6154340	25	2.0	25	83	8	62	68	4	4	23	1.26
6155829--6156265	44	9.9	43	82	5	496	30	23	15	30	1.95
6155829--6156265	133	3.3	133	89	1	626	30	23	15	30	1.95
6156268--6157049	265	3.0	264	90	1	1244	28	24	19	28	1.98
6156268--6157026	132	5.7	132	90	1	1216	28	23	18	28	1.98
6158332--6158372	14	3.0	13	89	7	55	14	19	0	65	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6158332--6158375	21	2.1	21	91	0	70	15	20	0	63	1.31
6158342--6158375	7	4.9	7	86	13	52	14	17	0	67	1.23
6161593--6161860	41	6.5	41	95	0	446	25	26	19	29	1.98
6161798--6161924	41	3.1	41	81	8	109	29	25	15	28	1.96
6163635--6163691	28	2.0	28	93	6	98	36	5	0	57	1.21
6163635--6163688	14	3.8	14	76	11	56	37	5	0	57	1.22
6164450--6164495	19	2.4	19	85	7	58	47	8	19	23	1.77
6164926--6164956	16	1.9	16	93	0	53	32	22	19	25	1.97
6166686--6166738	22	2.3	23	83	9	72	45	13	11	30	1.78
6169427--6169564	71	2.0	70	88	4	206	28	21	23	26	1.99
6169511--6169711	76	2.6	76	82	6	253	31	22	21	23	1.98
6172673--6172736	25	2.6	25	76	11	69	26	25	21	26	2.00
6187732--6187798	23	2.8	23	75	6	62	58	0	7	34	1.26
6187784--6187827	16	2.7	16	78	3	52	61	0	6	31	1.22
6187899--6187945	18	2.6	17	83	9	58	63	0	6	29	1.19
6187904--6187960	15	3.7	15	77	20	55	61	1	8	28	1.36
6188916--6188952	17	2.2	17	95	0	65	16	21	29	32	1.95
6189531--6189720	44	4.3	44	80	7	224	31	25	14	29	1.94
6189531--6189911	88	4.5	87	78	12	349	30	25	14	29	1.95
6189642--6189795	75	2.1	75	91	0	245	32	24	16	26	1.96
6189739--6189942	44	4.6	44	92	1	329	29	23	14	31	1.94
6189912--6190428	132	3.9	129	86	4	590	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6189976--6190361	44	8.8	44	67	7	183	28	23	17	30	1.97
6189932--6190428	264	1.9	264	89	1	773	28	23	17	30	1.97
6190449--6190810	44	8.2	45	73	5	290	28	22	17	30	1.97
6190443--6190824	88	4.3	89	89	1	545	28	22	18	31	1.97
6191920--6191962	21	2.1	20	86	4	59	16	20	0	62	1.32
6196047--6196104	30	1.9	30	89	0	89	41	3	24	31	1.71
6196316--6196347	13	2.5	13	94	0	55	31	0	12	56	1.37
6196444--6196732	50	5.8	50	93	0	479	25	23	30	20	1.98
6198756--6198822	23	2.8	23	75	6	62	58	0	7	34	1.26
6198770--6198860	48	1.9	46	82	6	110	56	0	8	35	1.31
6198919--6198974	16	3.4	16	76	16	53	60	1	10	26	1.40
6200157--6200181	13	1.9	13	100	0	50	68	0	0	32	0.90
6205262--6205460	55	3.6	56	88	3	303	24	8	17	50	1.72
6205360--6205437	18	4.3	18	67	20	54	23	6	15	55	1.63
6205366--6205457	21	4.8	20	72	15	61	26	5	15	53	1.63
6206941--6207157	107	2.0	107	95	1	393	36	11	12	38	1.81
6219240--6219277	18	2.2	17	86	9	51	21	7	2	68	1.28
6220826--6220864	18	2.3	18	86	8	55	43	12	5	38	1.65
6221015--6221045	15	2.1	15	93	0	53	19	32	9	38	1.84
6224407--6224436	15	2.0	15	93	0	51	23	46	6	23	1.75
6225177--6225216	17	2.3	18	86	4	55	45	12	5	37	1.64
6225367--6225397	15	2.1	15	93	0	53	25	29	6	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6227809--6227842	8	4.2	8	84	0	50	44	0	0	55	0.99
6228317--6228350	17	1.9	18	88	5	52	41	0	23	35	1.55
6228629--6228721	36	2.5	35	80	13	98	46	1	21	31	1.59
6230534--6230564	15	2.0	16	93	6	55	12	12	12	61	1.58
6232942--6232966	6	4.2	6	100	0	50	48	0	0	52	1.00
6238627--6238703	31	2.5	31	79	8	93	29	22	12	35	1.91
6250753--6250885	37	3.4	41	69	15	100	36	24	14	24	1.93
6253350--6253380	3	10.3	3	100	0	62	32	35	0	32	1.58
6253748--6253790	7	6.4	7	89	10	72	58	0	0	41	0.98
6253746--6253790	12	3.7	12	86	13	65	57	0	0	42	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207