genome.fa.s19.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  100  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29799078--29799153	25	3.1	25	90	1	118	25	6	27	40	1.80
29799082--29799156	24	3.1	24	86	1	96	24	6	24	45	1.77
29799284--29799337	26	2.1	26	89	0	81	16	20	25	37	1.93
29799298--29799349	26	2.0	26	84	0	68	13	23	30	32	1.93
29799340--29799528	32	6.0	32	75	3	150	21	21	22	33	1.97
29799824--29799886	33	1.9	33	87	6	92	22	26	25	25	2.00
29803837--29803925	23	3.7	24	69	13	67	71	0	12	15	1.13
29803814--29803900	38	2.3	37	79	15	88	71	0	11	17	1.14
29814586--29814665	37	2.2	37	84	4	108	27	30	17	25	1.97
29814784--29815020	47	5.1	47	91	2	352	27	29	9	32	1.89
29814784--29815020	92	2.5	93	90	2	350	27	29	9	32	1.89
29819194--29819414	40	5.6	40	82	7	238	23	27	22	26	2.00
29819181--29819335	78	2.0	80	88	2	233	24	27	21	26	2.00
29819194--29819414	79	2.8	79	82	6	225	23	27	22	26	2.00
29819186--29819414	118	1.9	119	82	6	286	24	26	22	26	2.00
29819720--29819798	29	2.7	29	86	5	106	27	32	15	24	1.95
29819780--29819882	43	2.4	43	100	0	206	26	35	15	22	1.94
29821748--29821826	37	2.1	37	88	4	115	25	30	18	25	1.98
29821944--29822177	47	5.0	47	91	1	346	27	30	9	32	1.89
29826256--29826300	13	3.7	11	85	14	54	44	11	6	37	1.66
29827276--29827463	50	3.8	49	79	7	200	28	17	25	29	1.97
29827267--29827461	101	1.9	99	85	6	266	27	16	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29827279--29827495	101	2.2	100	80	8	235	29	15	25	29	1.96
29831683--29832132	44	10.2	44	64	9	137	30	19	24	25	1.98
29831633--29832180	132	4.1	132	92	0	889	29	20	24	25	1.99
29831633--29832182	265	2.1	264	91	0	841	30	20	24	25	1.99
29832213--29833164	44	21.8	43	69	13	357	29	20	22	27	1.99
29832253--29832418	89	1.9	89	81	9	205	27	19	24	28	1.98
29832510--29832849	173	2.0	173	94	0	599	28	19	23	28	1.98
29832174--29832751	217	2.7	215	84	3	773	28	20	23	27	1.99
29832182--29832984	217	3.7	211	78	10	621	28	19	23	27	1.99
29832681--29833158	224	2.2	219	82	4	550	29	20	22	26	1.98
29832293--29833206	397	2.3	397	80	5	944	29	20	22	27	1.98
29833509--29833583	19	3.8	19	87	6	96	38	8	13	40	1.74
29833541--29833606	21	3.0	22	85	12	75	39	4	13	42	1.65
29833574--29833616	22	1.9	23	85	4	61	34	4	13	46	1.65
29833783--29833822	21	2.0	20	85	5	53	17	15	5	62	1.49
29840771--29840823	19	3.0	17	78	10	61	35	9	18	35	1.84
29840795--29840839	23	2.0	23	91	4	74	37	4	17	40	1.70
29841468--29841509	23	1.9	21	90	9	66	19	0	4	76	0.96
29847967--29848283	44	7.2	44	63	15	127	31	19	23	26	1.98
29847785--29848333	132	4.2	132	92	0	884	30	20	23	25	1.98
29848404--29849305	44	20.6	44	69	15	352	28	20	22	27	1.99
29848661--29849000	173	2.0	173	95	1	610	27	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29848325--29848962	217	2.9	216	81	6	747	28	20	23	28	1.98
29848833--29849306	224	2.1	218	83	3	572	28	21	24	26	1.99
29848661--29849131	173	2.7	171	86	8	535	26	20	24	27	1.99
29848444--29849357	397	2.3	397	82	3	974	28	20	22	27	1.99
29849667--29849738	21	3.5	19	82	16	81	38	5	12	43	1.66
29849706--29849748	22	1.9	23	85	4	61	34	4	13	46	1.65
29849916--29849954	19	1.9	19	85	10	51	15	12	5	66	1.41
29850432--29850473	19	2.4	16	85	14	57	35	0	2	61	1.09
29853061--29853142	42	2.0	42	87	4	121	31	24	13	30	1.93
29855682--29855725	23	1.9	22	82	17	54	36	25	0	38	1.56
29855770--29855863	45	2.1	45	89	0	143	29	23	20	26	1.99
29855860--29856053	51	3.8	51	79	3	214	29	27	18	24	1.98
29855867--29856051	101	1.8	101	88	5	284	30	27	17	24	1.97
29858480--29858509	8	3.6	8	95	4	51	23	10	0	66	1.21
29872188--29872216	11	2.6	11	100	0	58	65	6	20	6	1.40
29877464--29877527	25	2.6	25	76	0	74	31	23	18	26	1.98
29891228--29892213	490	2.0	490	87	0	1427	37	17	12	32	1.87
29902803--29902973	85	2.0	85	96	0	315	40	17	15	26	1.89
29951851--29952410	27	20.8	27	81	6	564	43	20	18	17	1.88
29959776--29959988	27	8.0	27	84	4	279	42	18	21	17	1.89
29959777--29959987	80	2.6	81	85	3	284	43	18	20	18	1.89
29959768--29959992	53	4.2	53	85	5	292	44	17	20	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29971960--29972127	88	1.9	88	86	0	237	27	25	20	26	1.99
29984399--29984483	39	2.2	36	80	17	93	60	4	2	32	1.30
29993737--29993780	11	3.9	11	82	5	52	63	2	0	34	1.07
29995706--29996242	50	10.6	50	88	1	691	22	29	20	27	1.98
29998901--29998978	28	2.8	27	80	7	93	53	1	12	32	1.47
29999239--29999284	24	1.9	24	81	0	56	52	4	6	36	1.47
29999969--30000036	20	3.6	19	81	11	68	70	5	20	2	1.21
30000423--30000473	26	1.9	27	92	4	86	13	3	41	41	1.63
30000554--30000600	16	3.0	15	77	17	51	14	0	4	80	0.85
30001014--30001256	46	5.5	46	68	12	150	27	20	20	30	1.98
30001004--30001299	87	3.4	87	75	10	325	27	20	20	30	1.98
30000927--30001386	175	2.6	175	93	0	794	27	20	19	31	1.97
30013789--30013877	28	3.1	27	76	19	83	52	1	11	34	1.44
30013803--30013880	29	2.8	28	86	3	111	53	1	11	33	1.45
30014142--30014186	23	1.9	24	81	4	56	51	4	8	35	1.54
30015308--30015358	26	1.9	27	88	4	77	15	1	41	41	1.58
30015439--30015485	16	3.0	16	79	14	53	10	0	8	80	0.89
30017909--30018265	27	13.3	27	86	3	497	43	19	19	16	1.88
30034398--30034445	14	3.2	14	72	16	51	39	4	12	43	1.62
30048668--30048840	51	3.4	50	74	10	163	24	15	29	30	1.96
30048702--30048835	50	2.6	51	83	3	155	23	17	28	30	1.97
30048702--30048843	51	2.8	50	82	3	169	23	18	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30054323--30054852	27	19.6	27	81	1	542	43	20	17	18	1.89
30055217--30055287	28	2.5	28	83	0	79	22	30	25	21	1.98
30062260--30062776	53	9.7	53	87	3	601	41	17	22	18	1.90
30062260--30062776	27	19.3	27	82	4	602	41	17	22	18	1.90
30062933--30063004	26	2.8	25	85	6	83	8	22	27	41	1.82
30063118--30063205	28	3.2	27	87	6	131	21	23	25	29	1.99
30063118--30063228	28	3.7	31	74	22	87	22	24	25	27	2.00
30063117--30063241	61	2.1	56	82	10	144	22	23	24	29	1.99
30072879--30072953	26	2.9	26	78	7	98	17	22	25	34	1.96
30073062--30073151	28	3.2	27	87	7	117	30	20	17	32	1.95
30076576--30076657	24	3.4	24	89	0	128	50	23	4	21	1.68
30076576--30076709	24	5.6	24	82	3	126	47	20	5	26	1.73
30076727--30076832	27	3.9	27	88	0	167	22	22	21	33	1.98
30076834--30076888	27	2.1	27	86	3	76	21	29	18	30	1.97
30076853--30077020	54	3.1	52	82	5	183	22	17	19	41	1.90
30076848--30077020	27	6.4	27	83	5	165	21	17	19	41	1.91
30087718--30087751	17	1.9	18	94	5	61	41	5	14	38	1.70
30089214--30089266	5	10.8	5	77	4	54	18	7	0	73	1.06
30089222--30089274	24	2.2	24	83	6	63	22	5	0	71	1.06
30090579--30090655	6	12.3	6	73	17	50	14	1	9	75	1.10
30090575--30090656	32	2.6	32	79	11	89	13	2	9	74	1.16
30094538--30094591	24	2.2	24	83	6	65	68	1	1	27	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30094538--30094593	15	3.8	15	76	9	53	67	1	1	28	1.10
30094799--30094837	19	2.0	21	85	10	55	69	5	10	15	1.34
30095012--30095080	21	3.2	22	75	21	65	37	15	7	39	1.76
30095031--30095089	19	3.0	21	85	14	90	35	15	10	38	1.81
30099370--30099552	101	1.8	102	85	1	260	26	15	25	32	1.96
30099366--30099558	51	3.8	51	76	6	194	26	15	25	32	1.96
30103754--30103930	27	6.6	27	84	2	203	27	15	28	29	1.96
30103754--30103930	54	3.3	55	84	4	225	27	15	28	29	1.96
30103755--30103909	81	1.9	81	88	2	231	27	15	28	29	1.96
30103751--30103930	81	2.2	81	83	2	227	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207