genome.fa.s19.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  144  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44298241--44298279	20	2.0	20	84	0	51	58	0	2	38	1.12
44298573--44298612	17	2.3	19	79	12	50	45	0	0	55	0.99
44299345--44299374	5	5.8	5	96	4	51	76	0	0	23	0.78
44300259--44300307	23	2.2	23	96	3	91	51	8	2	38	1.43
44300613--44300665	26	2.0	26	88	0	79	24	13	15	47	1.81
44300993--44301076	44	1.9	44	82	4	107	48	2	4	44	1.36
44309217--44309266	25	2.0	26	88	4	75	38	12	8	42	1.71
44312158--44312191	17	2.0	17	100	0	68	29	11	17	41	1.85
44313456--44313638	69	2.7	69	88	0	258	42	19	13	24	1.87
44314870--44314927	30	1.9	31	85	3	82	24	24	6	44	1.77
44315967--44316759	153	5.2	148	85	7	908	31	9	7	51	1.62
44315957--44316759	300	2.6	303	87	6	1126	31	9	7	51	1.62
44315957--44316759	150	5.3	151	84	7	972	31	9	7	51	1.62
44322446--44322631	69	2.7	69	88	0	264	41	18	15	24	1.89
44322527--44322629	23	4.5	23	64	18	61	37	17	18	26	1.93
44323414--44323521	42	2.5	42	80	4	128	30	21	17	30	1.96
44330318--44330357	18	2.3	19	87	12	59	20	7	12	60	1.56
44340752--44340780	11	2.7	11	94	5	51	20	10	0	68	1.18
44343413--44343526	56	2.0	56	84	3	149	31	21	27	20	1.98
44343453--44343487	17	2.0	18	88	5	54	20	22	37	20	1.95
44347254--44347318	25	2.5	26	80	2	78	33	6	23	36	1.80
44347254--44347318	13	5.1	13	79	3	78	33	6	23	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44347537--44347614	20	4.0	19	74	12	61	51	2	1	44	1.23
44347912--44347943	16	2.0	16	100	0	64	18	25	12	43	1.85
44357239--44357263	13	1.9	13	100	0	50	32	16	12	40	1.84
44365912--44365940	14	2.1	14	93	6	51	6	6	17	68	1.34
44371157--44371303	73	2.0	74	93	1	251	44	21	9	24	1.81
44377919--44377967	23	2.1	23	92	0	80	42	24	8	24	1.81
44379045--44379111	33	2.0	33	91	0	107	43	7	10	38	1.67
44384839--44384863	8	3.1	8	100	0	50	24	40	12	24	1.88
44386345--44386384	21	1.9	21	85	10	55	10	17	7	65	1.46
44397293--44397382	25	3.6	25	74	5	67	25	25	16	32	1.96
44404378--44404425	25	1.9	25	91	0	78	22	22	18	35	1.96
44404406--44404467	25	2.5	25	83	0	88	20	22	25	30	1.98
44413506--44413730	40	5.7	40	82	6	242	26	28	20	24	1.99
44420771--44420950	40	4.6	40	81	8	208	25	28	21	25	1.99
44420771--44420950	79	2.3	79	80	9	197	25	28	21	25	1.99
44426310--44426452	27	5.3	27	75	3	117	32	37	9	20	1.85
44426361--44426482	54	2.3	54	80	5	131	36	36	6	20	1.79
44428364--44428716	173	2.0	173	93	1	600	30	11	20	37	1.89
44434450--44434589	20	6.9	20	77	0	127	10	22	21	45	1.83
44434932--44435172	80	3.0	80	95	0	410	41	6	16	35	1.74
44436384--44436425	19	2.2	19	91	8	68	28	16	0	54	1.42
44439937--44439962	9	2.9	9	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44450134--44450352	80	2.7	78	83	8	237	26	21	26	26	1.99
44450134--44450319	40	4.7	40	89	5	252	24	21	27	26	1.99
44457367--44457549	40	4.7	40	89	6	259	23	21	27	26	1.99
44457367--44457582	80	2.7	79	81	10	230	25	21	27	26	1.99
44468681--44468815	49	2.9	49	82	6	165	30	9	10	49	1.69
44470200--44470380	99	1.8	99	92	4	310	43	2	5	48	1.40
44470378--44470428	13	3.5	15	74	15	54	37	1	0	60	1.08
44470390--44470429	12	3.0	13	80	20	55	42	0	0	57	0.98
44470392--44470440	15	3.5	13	81	18	55	38	0	2	59	1.09
44470370--44470445	27	2.5	31	76	23	83	39	1	1	57	1.15
44470509--44470665	26	5.5	26	65	18	80	42	0	2	54	1.18
44470266--44470758	118	4.1	119	93	2	841	41	1	4	52	1.28
44470591--44470637	18	2.6	18	90	6	69	42	0	0	57	0.98
44470266--44470758	238	2.1	238	93	3	841	41	1	4	52	1.28
44470266--44470834	238	2.4	237	88	6	780	42	1	3	52	1.28
44470922--44471017	45	2.2	44	90	5	149	36	29	4	30	1.76
44470996--44471033	16	2.4	16	95	0	67	26	34	2	36	1.71
44477466--44477522	30	1.9	30	85	3	80	42	1	24	31	1.65
44477734--44477765	13	2.5	13	94	0	55	31	0	12	56	1.37
44477948--44478088	51	2.8	50	83	4	169	26	24	30	18	1.98
44484692--44484752	25	2.4	25	86	8	79	19	11	8	60	1.55
44484763--44484800	16	2.2	19	86	13	55	39	10	0	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44489499--44489671	88	2.0	88	84	2	231	28	19	24	27	1.98
44489866--44490048	50	3.7	50	71	2	152	31	20	19	28	1.97
44489940--44490245	50	6.0	50	73	6	258	27	18	25	28	1.98
44489813--44490091	100	2.8	100	87	1	389	30	19	22	26	1.98
44490040--44490249	54	4.0	54	76	13	235	25	17	27	30	1.97
44489939--44490249	154	2.0	154	92	1	516	26	18	25	29	1.98
44490063--44490278	100	2.1	100	87	8	312	27	18	25	28	1.98
44489966--44490278	50	6.2	50	68	9	186	28	18	24	28	1.98
44490290--44490482	44	4.5	42	76	12	178	28	20	21	29	1.98
44490290--44490484	85	2.3	86	83	9	229	28	20	21	29	1.98
44491087--44491143	21	2.7	21	97	2	105	10	50	26	12	1.72
44491365--44491405	21	1.9	22	85	5	57	7	17	4	70	1.28
44491359--44491405	22	2.1	22	84	7	60	8	17	4	70	1.29
44491350--44491425	37	2.1	37	83	7	95	10	14	3	71	1.28
44502557--44502592	18	1.9	19	94	5	65	66	0	0	33	0.92
44506669--44506751	40	2.1	40	100	0	166	24	19	18	38	1.93
44521301--44521325	13	1.9	13	100	0	50	32	16	8	44	1.76
44524729--44524795	29	2.6	25	78	19	66	47	8	2	40	1.50
44525004--44525039	5	7.2	5	100	0	72	19	0	0	80	0.71
44532666--44532949	40	7.1	40	88	1	408	32	19	28	20	1.97
44532729--44532869	20	7.1	20	66	0	93	29	21	29	19	1.98
44532666--44532950	80	3.6	80	93	0	453	32	19	28	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44539138--44539306	80	2.1	80	87	0	239	32	14	28	24	1.95
44539122--44539306	40	4.6	40	83	0	217	33	15	27	23	1.95
44548986--44549042	10	5.6	10	82	12	62	61	3	1	33	1.23
44553749--44553804	25	2.2	24	76	17	60	60	1	1	35	1.17
44554463--44554497	16	2.3	15	90	5	52	57	0	0	42	0.99
44558203--44558287	30	2.8	29	85	3	89	28	23	28	20	1.99
44558401--44558466	26	2.5	26	87	0	87	36	22	25	15	1.93
44558659--44559060	27	14.9	27	78	7	354	25	15	17	40	1.90
44558659--44559060	54	7.5	53	85	2	428	25	15	17	40	1.90
44558664--44559060	81	4.9	81	83	3	469	25	15	17	40	1.90
44564954--44564995	16	2.6	16	81	14	50	54	0	2	42	1.13
44565129--44565174	22	2.1	22	87	0	65	58	2	2	36	1.22
44568784--44568849	26	2.5	26	82	2	78	39	10	21	28	1.86
44571143--44571271	53	2.4	54	84	1	161	43	20	16	19	1.88
44571143--44571271	27	4.8	27	77	9	129	43	20	16	19	1.88
44584434--44584458	9	2.8	9	100	0	50	32	12	12	44	1.78
44584526--44584556	9	3.4	9	90	0	53	38	22	12	25	1.90
44584897--44585142	62	4.2	61	77	17	245	43	0	4	51	1.26
44584897--44585152	120	2.2	117	87	8	378	43	1	3	51	1.27
44593837--44593873	14	2.6	15	87	12	60	59	0	40	0	0.97
44594058--44594090	15	2.2	15	94	0	57	42	0	57	0	0.98
44594446--44594522	40	1.9	40	91	2	127	44	7	7	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44594530--44594613	17	4.9	17	69	16	57	35	1	1	61	1.11
44595069--44595403	167	2.0	168	89	4	516	47	7	8	36	1.63
44595536--44595572	16	2.2	17	90	4	58	54	2	2	40	1.29
44597919--44597957	12	3.4	11	89	3	51	84	12	0	2	0.72
44600728--44600776	5	9.8	5	91	8	82	81	0	0	18	0.69
44606835--44607037	51	4.0	52	72	12	181	25	17	27	30	1.97
44606846--44607030	101	1.8	102	88	3	284	25	17	25	30	1.97
44615109--44615157	19	2.6	18	83	6	53	32	14	2	51	1.54
44615241--44615265	13	1.9	13	100	0	50	52	0	0	48	1.00
44620409--44620470	26	2.4	26	86	0	79	37	9	12	40	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207