genome.fa.s19.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  125  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38179091--38179137	23	2.1	23	84	7	62	51	12	4	31	1.59
38184268--38184330	21	3.0	21	88	2	90	30	3	33	33	1.74
38188141--38188202	10	5.9	10	74	10	52	33	32	3	30	1.74
38188141--38188203	21	3.0	21	88	2	90	33	33	3	30	1.74
38188502--38188552	14	3.8	13	82	14	52	72	1	7	17	1.18
38188502--38188552	13	3.8	13	84	7	59	72	1	7	17	1.18
38189319--38189352	15	2.3	15	89	0	50	35	23	32	8	1.86
38195071--38195117	20	2.3	20	100	0	94	42	21	27	8	1.81
38202471--38202693	26	8.5	26	81	3	250	29	26	9	34	1.89
38203052--38203320	26	10.3	25	81	5	268	28	25	11	34	1.90
38202162--38203268	575	1.9	576	87	2	1607	29	23	12	34	1.92
38203069--38203320	78	3.2	78	85	3	328	28	26	11	34	1.90
38209686--38209725	20	1.9	21	85	10	55	25	2	12	60	1.45
38212382--38212437	26	2.2	26	90	0	85	28	21	26	23	1.99
38219817--38220012	43	4.6	43	87	2	268	30	30	16	22	1.96
38220216--38220283	35	2.0	35	82	8	86	55	2	1	39	1.24
38221447--38221686	68	3.5	68	98	0	462	46	18	12	22	1.83
38223200--38223487	148	2.0	146	81	4	346	31	8	15	44	1.77
38224019--38224061	21	2.0	22	86	4	61	37	27	0	34	1.57
38224272--38224301	7	4.3	7	95	0	51	30	50	0	20	1.49
38225563--38225798	41	5.8	41	90	0	348	28	27	24	20	1.99
38225838--38225970	40	3.4	38	79	11	126	21	22	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38228452--38228513	30	2.1	30	96	0	115	43	25	3	27	1.70
38235405--38235436	5	6.4	5	100	0	64	18	0	0	81	0.70
38236848--38236908	20	3.1	19	86	9	77	8	24	19	47	1.76
38243687--38243722	16	2.2	16	90	0	54	22	0	2	75	0.94
38244254--38244286	16	2.0	17	88	5	50	69	3	0	27	1.03
38255855--38255893	15	2.5	15	83	4	51	61	2	2	33	1.23
38258294--38258324	16	1.9	16	93	0	53	48	0	9	41	1.36
38267792--38267831	19	2.1	19	86	9	55	32	2	5	60	1.32
38275912--38275987	26	2.9	26	80	0	89	36	9	19	34	1.84
38278558--38278632	20	3.7	19	75	7	60	44	25	21	9	1.82
38280922--38280946	2	12.5	2	100	0	50	0	48	0	52	1.00
38280946--38280999	26	2.0	27	82	3	65	11	11	1	75	1.11
38283350--38283406	22	2.5	24	80	13	66	43	0	7	49	1.29
38283363--38283412	24	2.1	24	85	14	68	52	0	6	42	1.26
38283630--38283666	18	2.1	18	100	0	74	37	32	0	29	1.58
38291187--38291394	46	4.5	45	83	1	209	29	21	18	30	1.97
38295442--38295554	28	4.1	28	77	12	99	38	21	12	27	1.89
38297142--38297202	21	3.0	20	75	22	56	50	6	0	42	1.28
38298480--38298852	44	8.5	44	69	13	164	30	25	17	27	1.97
38298732--38298852	45	2.7	45	82	5	113	28	24	19	27	1.98
38298406--38298878	218	2.2	216	87	3	608	29	26	17	27	1.98
38300832--38300905	30	2.5	30	86	8	98	37	18	21	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38301988--38302067	6	12.8	6	78	12	54	11	8	11	68	1.39
38305763--38305892	62	2.1	63	82	4	156	31	11	7	49	1.67
38307017--38307076	16	3.9	15	76	12	50	73	3	0	23	0.98
38310073--38310112	19	2.0	21	85	9	57	27	0	2	70	1.01
38310145--38310182	19	2.1	19	85	5	51	55	10	2	31	1.48
38321373--38321432	29	2.1	29	81	3	68	48	11	6	33	1.66
38327500--38327569	28	2.5	29	74	6	72	32	24	25	17	1.96
38329910--38329999	43	2.1	43	97	0	171	27	13	30	28	1.94
38332974--38333005	15	2.1	15	94	0	55	68	9	6	15	1.36
38334870--38334984	27	4.3	26	80	6	104	45	19	13	21	1.85
38337930--38337972	22	2.0	22	90	0	68	53	9	25	11	1.67
38349575--38349681	23	4.9	23	82	10	125	36	23	20	19	1.95
38351876--38351973	33	2.9	33	74	7	99	51	9	20	19	1.74
38352418--38352459	21	2.0	21	81	9	50	54	0	2	42	1.13
38354168--38354192	2	12.5	2	100	0	50	0	48	0	52	1.00
38356724--38356792	16	4.2	16	96	3	129	24	0	37	37	1.56
38356724--38356792	33	2.1	32	97	2	129	24	0	37	37	1.56
38356773--38356863	45	2.0	45	85	2	121	27	6	28	37	1.82
38357008--38357058	15	3.5	15	81	10	61	52	0	0	47	1.00
38357012--38357062	16	3.0	17	78	18	61	54	0	0	45	0.99
38357244--38357295	15	3.6	15	80	12	56	53	1	0	44	1.11
38357379--38357419	16	2.5	17	85	14	52	53	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38357014--38357420	120	3.4	120	93	2	678	50	5	1	42	1.33
38364020--38364058	12	3.2	12	85	0	51	20	23	5	51	1.67
38364307--38364497	50	3.8	50	83	2	177	22	30	19	26	1.98
38366471--38366513	22	2.0	22	90	0	68	27	16	23	32	1.96
38372333--38372362	12	2.5	12	94	0	51	30	40	23	6	1.80
38375018--38375093	37	2.1	37	92	0	125	65	2	14	17	1.37
38377397--38377491	25	3.8	25	79	5	111	23	20	26	30	1.98
38380176--38380213	10	3.5	11	86	13	53	34	0	2	63	1.09
38381548--38381642	46	2.1	46	97	0	181	48	15	21	14	1.81
38388116--38388412	26	11.5	26	92	0	398	38	19	16	25	1.92
38388116--38388412	78	3.8	78	91	0	461	38	19	16	25	1.92
38388596--38388660	27	2.4	27	87	7	89	18	23	23	35	1.96
38388805--38388883	28	2.8	28	74	0	77	26	17	22	32	1.96
38389864--38389980	1	117.0	1	68	0	54	7	5	3	82	0.92
38389863--38389908	6	8.0	6	80	9	60	2	15	0	82	0.76
38389864--38389980	11	10.2	11	74	16	60	7	5	3	82	0.92
38389871--38389917	22	2.2	21	88	3	67	2	14	0	82	0.75
38389904--38389969	17	3.8	17	80	11	71	10	1	6	81	0.92
38389929--38389979	19	2.8	18	91	5	84	9	0	5	84	0.78
38389937--38389980	19	2.3	19	100	0	88	9	0	4	86	0.70
38389894--38389969	25	2.9	26	86	5	100	9	2	5	82	0.90
38390685--38390721	17	2.1	18	90	5	58	45	0	24	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38393612--38393642	16	1.9	16	93	0	53	38	0	38	22	1.54
38393876--38393911	18	2.0	18	100	0	72	61	0	0	38	0.96
38393830--38393964	55	2.5	55	77	13	129	51	3	0	44	1.24
38394193--38394257	22	3.0	22	100	0	130	40	4	4	50	1.43
38394460--38394542	26	3.2	26	63	13	62	49	2	4	43	1.37
38394388--38394579	52	3.8	52	89	3	295	48	5	3	42	1.43
38406678--38407112	89	4.9	89	83	1	512	28	24	22	24	1.99
38406887--38407032	44	3.3	44	68	11	118	29	27	23	19	1.98
38406926--38407084	45	3.5	46	70	9	130	29	21	24	24	1.99
38412124--38412171	21	2.3	21	88	0	69	25	10	52	12	1.71
38413565--38413603	9	4.1	9	83	9	51	58	0	0	41	0.98
38413568--38413628	21	2.9	20	77	22	63	62	1	0	36	1.05
38413570--38413628	11	5.6	10	77	15	57	64	1	0	33	1.04
38414069--38414134	16	4.1	16	82	0	87	43	4	25	25	1.73
38414073--38414147	32	2.3	32	83	2	87	44	4	25	26	1.72
38414375--38414410	18	2.0	18	100	0	72	66	0	0	33	0.92
38424325--38424368	20	2.3	20	88	7	65	31	0	0	68	0.90
38424316--38424365	24	2.0	25	84	11	66	30	4	0	66	1.10
38425086--38425169	31	2.7	31	80	7	107	42	14	1	41	1.53
38432302--38432361	21	2.9	21	82	0	75	38	5	20	36	1.74
38436898--38436998	43	2.3	43	81	3	123	24	18	20	35	1.95
38436931--38437013	43	1.9	43	85	0	112	26	15	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38441661--38441709	25	2.0	25	83	0	62	57	0	32	10	1.32
38442970--38443003	11	3.2	10	84	15	50	61	0	2	35	1.11
38444059--38444161	52	2.0	52	96	0	188	17	20	23	38	1.93
38445081--38445136	25	2.2	24	76	17	60	60	1	1	35	1.17
38445841--38445882	16	2.5	17	81	18	52	45	0	0	54	0.99
38453251--38453308	28	2.0	31	83	10	77	43	0	6	50	1.29
38465915--38466026	37	3.1	37	76	3	93	40	30	13	16	1.86
38469022--38469092	35	2.0	35	100	0	142	28	22	11	38	1.88
38470048--38470141	46	2.0	46	89	0	143	27	14	14	42	1.86
38471047--38471165	60	2.0	60	91	0	193	52	13	0	33	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207