genome.fa.s19.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  177  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54529629--54530016	165	2.4	165	91	1	611	37	7	26	28	1.84
54534931--54534958	6	4.7	6	100	0	56	17	32	0	50	1.47
54538568--54538610	19	2.2	20	84	12	63	32	18	0	48	1.48
54538783--54538886	45	2.3	45	89	0	154	42	20	18	19	1.90
54543225--54543277	3	17.7	3	100	0	106	33	0	0	66	0.92
54555306--54555417	27	4.1	27	90	0	161	41	21	18	18	1.91
54555327--54555431	54	1.9	54	90	0	165	38	20	20	20	1.94
54558390--54558448	26	2.3	26	96	0	109	32	23	5	38	1.77
54562020--54562058	20	2.0	20	89	0	60	25	25	5	43	1.75
54562019--54562064	20	2.2	20	80	3	56	23	32	6	36	1.81
54565797--54566093	50	5.8	50	82	3	283	22	28	21	27	1.99
54567207--54567243	13	2.9	13	80	19	51	29	0	5	64	1.15
54567509--54567699	51	3.8	50	83	4	215	25	17	28	28	1.98
54570590--54570698	25	4.4	25	83	0	119	32	17	25	24	1.97
54570584--54570698	50	2.3	50	81	0	131	33	17	25	24	1.96
54573049--54573083	18	1.9	18	88	0	52	22	8	40	28	1.84
54576332--54576356	8	3.1	8	100	0	50	52	0	0	48	1.00
54588482--54588532	24	2.1	24	96	0	93	33	0	17	49	1.47
54595686--54595725	16	2.4	16	83	4	53	62	0	7	30	1.23
54596045--54596086	13	3.2	13	77	16	50	69	2	0	28	1.01
54598731--54598775	22	2.0	22	86	4	63	37	17	6	37	1.76
54598754--54598790	19	1.9	19	100	0	74	35	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54598757--54598798	19	2.3	19	88	8	61	38	11	14	35	1.83
54602461--54602499	19	2.1	19	85	0	51	28	2	5	64	1.28
54602566--54602613	21	2.2	21	85	3	60	47	2	4	45	1.33
54602574--54602614	21	2.0	21	95	0	73	46	0	7	46	1.30
54612893--54612989	51	1.9	51	82	0	122	35	14	27	22	1.93
54612941--54613090	58	2.6	58	82	0	192	38	13	28	20	1.90
54613142--54613203	32	1.9	32	93	0	106	41	17	24	16	1.89
54627283--54627312	12	2.6	11	90	10	51	16	3	0	80	0.85
54629208--54629264	9	6.1	10	75	19	52	54	1	0	43	1.10
54629210--54629265	19	3.1	17	76	19	60	57	1	0	41	1.09
54629212--54629263	27	1.9	27	88	7	79	57	1	0	40	1.10
54629209--54629264	8	6.1	9	80	17	62	55	1	0	42	1.10
54645644--54645683	13	3.0	13	82	7	53	0	7	7	85	0.76
54646648--54646679	14	2.2	15	94	5	57	53	0	0	46	1.00
54649853--54650025	91	1.9	89	82	4	213	39	20	7	31	1.81
54650386--54650495	19	5.8	18	70	18	62	28	6	2	62	1.33
54650400--54650498	29	3.5	27	75	15	85	30	7	2	60	1.34
54650400--54650523	57	2.2	56	82	8	144	29	6	1	62	1.30
54650436--54650541	47	2.2	46	80	12	117	30	4	0	64	1.20
54650471--54650550	37	2.2	38	78	17	89	31	3	0	65	1.11
54650471--54650514	18	2.4	18	92	3	70	29	4	0	65	1.12
54650426--54650524	18	5.3	18	74	14	69	28	5	1	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54650612--54650792	88	2.0	89	82	3	222	35	8	19	37	1.82
54650624--54650820	88	2.2	86	78	8	209	37	8	15	39	1.77
54654639--54654718	41	2.0	40	90	2	124	31	25	17	26	1.97
54654868--54655151	30	9.3	30	84	3	334	42	17	8	30	1.79
54659907--54659969	30	2.1	30	96	0	117	23	3	15	57	1.53
54666081--54666158	38	2.1	38	100	0	156	17	15	12	53	1.72
54669524--54669553	12	2.5	12	94	0	51	50	0	3	46	1.18
54669538--54669639	31	3.3	30	71	15	84	42	1	6	49	1.41
54670158--54670240	42	2.0	42	87	0	121	28	18	18	34	1.94
54674394--54674782	9	44.4	9	68	22	208	33	0	21	44	1.54
54674383--54674736	25	14.3	25	79	18	168	34	0	20	45	1.54
54674487--54674593	19	5.4	18	75	24	83	33	0	18	47	1.49
54674501--54674724	76	3.0	69	84	12	295	33	0	19	46	1.50
54674398--54674727	69	4.6	70	76	16	256	34	0	20	45	1.54
54674434--54674733	62	4.9	61	71	21	227	33	0	20	46	1.51
54677239--54677397	83	1.9	83	90	2	257	29	18	12	39	1.87
54678106--54678182	39	2.0	40	87	7	113	38	38	2	19	1.66
54678333--54678364	15	2.1	16	94	5	57	50	3	0	46	1.17
54678445--54678507	8	8.4	7	77	10	54	42	36	0	20	1.52
54678445--54678501	23	2.5	23	83	8	64	43	36	0	19	1.51
54678451--54678507	15	3.8	16	79	9	66	42	38	0	19	1.51
54678797--54679240	114	3.9	111	78	10	434	27	25	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54681525--54681577	26	2.2	23	83	16	63	56	0	5	37	1.23
54686044--54686068	7	3.6	7	100	0	50	28	12	32	28	1.92
54688586--54688744	41	3.9	41	87	1	194	22	27	20	30	1.98
54688627--54688759	41	3.2	40	88	2	167	22	27	21	28	1.99
54702197--54702255	9	6.7	9	77	12	52	37	3	0	59	1.14
54704810--54704835	12	2.2	12	100	0	52	76	15	7	0	0.99
54709282--54709332	17	3.0	16	80	8	57	66	0	1	31	1.03
54709308--54709390	20	4.2	20	74	10	62	67	2	0	30	1.03
54709299--54709359	28	2.2	28	87	0	86	68	1	1	27	1.08
54709293--54709390	30	3.2	31	81	10	103	67	2	1	29	1.09
54709614--54709679	29	2.3	29	80	17	84	36	3	1	59	1.22
54709621--54709679	30	2.0	31	87	12	88	35	3	1	59	1.24
54709678--54709716	18	2.1	18	86	13	53	41	5	0	53	1.23
54709701--54709766	10	6.8	10	71	13	57	36	3	0	60	1.12
54714203--54714239	9	4.1	9	85	0	56	48	13	8	29	1.71
54714452--54714511	30	2.0	31	83	9	79	20	38	0	41	1.52
54715166--54715191	5	5.2	5	100	0	52	23	19	19	38	1.93
54718272--54718410	41	3.4	41	90	1	208	40	13	21	24	1.90
54721940--54722448	264	1.9	265	93	0	885	38	15	12	33	1.85
54725223--54725270	23	2.1	23	92	0	78	29	8	14	47	1.73
54733089--54733139	21	2.5	20	87	6	68	25	17	23	33	1.96
54735540--54735607	23	3.0	23	93	0	118	22	22	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54736163--54736212	24	2.0	27	88	11	79	36	12	0	52	1.39
54736297--54736348	27	1.9	27	92	0	86	30	21	32	15	1.94
54736427--54736496	19	3.7	19	83	11	99	38	8	0	52	1.32
54736432--54736502	37	1.9	37	100	0	142	40	9	0	49	1.36
54736722--54736793	19	3.8	19	79	3	92	37	9	0	52	1.34
54736359--54737060	293	2.4	295	96	0	1302	31	14	9	44	1.76
54737007--54737074	21	3.2	20	66	18	55	33	11	1	52	1.47
54741229--54741318	46	2.0	46	88	4	137	33	11	24	31	1.90
54743559--54743652	25	3.9	23	72	14	64	27	19	27	25	1.99
54748574--54748687	31	3.7	30	74	9	104	39	1	4	54	1.31
54748561--54748690	61	2.1	61	92	0	215	40	1	5	52	1.34
54753113--54753147	17	2.1	17	89	5	54	31	2	22	42	1.68
54754411--54754495	41	2.1	41	84	0	107	29	20	24	25	1.99
54763903--54763947	20	2.2	20	84	7	56	51	4	4	40	1.42
54763923--54764073	50	3.2	46	70	20	146	52	3	9	34	1.52
54763863--54764071	104	2.1	98	90	5	319	51	3	10	34	1.54
54763969--54764013	20	2.2	20	84	0	63	55	0	8	35	1.31
54763865--54764029	52	3.2	52	68	16	151	51	3	10	35	1.51
54763918--54764073	46	3.2	48	72	21	146	51	3	8	35	1.51
54765363--54765647	44	6.4	44	82	7	326	29	23	15	31	1.95
54765619--54766471	88	9.7	88	90	0	1229	24	26	23	25	2.00
54772683--54772895	104	2.1	103	94	1	374	51	4	9	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54772787--54772835	20	2.3	20	82	6	62	55	2	8	34	1.41
54772685--54772866	54	3.5	53	72	17	155	51	3	9	35	1.52
54773656--54773695	14	2.8	15	85	11	57	72	5	5	17	1.21
54776562--54776672	55	2.0	55	89	3	170	26	7	14	52	1.67
54777898--54777943	22	2.0	22	83	12	56	43	13	0	43	1.43
54782846--54782914	20	3.5	20	72	6	68	31	4	7	56	1.46
54785867--54785911	23	2.0	23	91	4	74	37	6	13	42	1.70
54786933--54786978	19	2.4	19	96	0	83	30	6	8	54	1.56
54791926--54792346	125	3.4	125	84	4	598	28	18	22	30	1.97
54794626--54794665	18	2.2	18	95	0	71	42	5	27	25	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207