Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  176  of  207  ( 24831 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54225202--54225236
18
1.9
18
88
11
54
25
2
0
71
1.00
54231194--54231234
10
3.7
11
87
9
57
43
2
0
53
1.13
54231904--54231957
21
2.6
21
77
13
58
55
3
1
38
1.28
54246330--54246405
22
3.5
22
81
5
73
15
30
19
34
1.93
54250829--54250874
22
2.1
22
88
8
67
69
2
2
26
1.11
54255740--54255845
50
2.1
51
85
8
144
33
10
10
45
1.73
54256404--54256612
91
2.3
91
90
0
319
45
3
3
46
1.37
54256438--54256579
47
3.1
46
66
24
118
44
2
3
50
1.31
54256526--54256586
28
2.2
28
85
5
81
45
0
3
50
1.17
54256627--54257404
120
6.5
120
97
0
1375
43
1
5
49
1.36
54256752--54256803
15
3.6
15
80
12
56
44
0
1
53
1.11
54256872--54256923
15
3.6
15
80
12
56
44
0
1
53
1.11
54256992--54257043
15
3.6
15
80
12
56
44
0
1
53
1.11
54257121--54257167
16
3.0
16
81
12
62
48
0
2
48
1.13
54257241--54257287
16
3.0
16
81
12
62
48
0
2
48
1.13
54257361--54257405
16
2.8
16
83
10
56
48
0
2
48
1.13
54257616--54257648
16
2.1
16
94
0
57
24
36
3
36
1.71
54261425--54261455
10
3.1
10
95
0
53
67
0
0
32
0.91
54261435--54261476
17
2.4
18
84
15
61
73
0
2
23
0.94
54261824--54261865
19
2.2
19
87
8
59
42
2
0
54
1.13
54261824--54261882
18
3.2
19
83
7
68
37
1
0
61
1.07
54261917--54262074
85
1.8
86
82
1
201
34
7
18
39
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54278480--54278542
29
2.1
29
85
8
83
36
23
17
22
1.95
54281099--54281135
18
2.1
18
94
0
65
37
10
24
27
1.88
54285659--54285695
18
2.1
18
100
0
74
35
10
27
27
1.90
54288419--54288448
11
2.7
11
100
0
60
46
0
0
53
1.00
54288706--54288731
7
3.7
7
100
0
52
53
0
0
46
1.00
54288785--54288845
9
6.3
9
77
18
61
77
0
14
8
0.99
54288791--54288861
31
2.3
31
100
0
142
74
0
16
8
1.05
54290421--54290468
24
2.0
24
88
8
71
35
0
18
45
1.50
54297160--54297297
43
3.2
43
87
3
179
30
14
18
36
1.91
54297174--54297299
43
3.0
42
90
2
189
31
12
18
37
1.88
54301505--54301544
22
1.9
20
85
10
53
52
7
7
32
1.58
54303179--54303222
18
2.5
17
82
10
52
18
6
0
75
1.02
54303838--54303953
62
1.9
60
87
3
169
37
12
13
36
1.84
54319843--54319873
15
2.1
15
93
0
53
19
32
0
48
1.49
54324609--54324660
24
2.2
24
85
0
68
53
9
3
32
1.51
54330941--54331137
106
1.9
106
96
0
367
28
20
20
30
1.98
54335694--54335726
12
2.8
12
95
0
57
42
42
15
0
1.46
54342387--54343300
44
20.7
45
75
8
709
27
16
27
29
1.97
54342382--54343308
132
7.0
132
92
3
1524
27
16
27
29
1.97
54343291--54343483
95
2.0
95
91
0
314
32
21
20
25
1.97
54346033--54346229
106
1.9
106
96
0
367
28
20
20
30
1.98
54349751--54349780
4
7.5
4
92
0
51
23
0
30
46
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54349947--54350194
124
2.0
122
96
1
460
21
19
18
41
1.91
54359171--54359224
16
3.4
16
89
0
72
29
1
35
33
1.69
54359203--54359297
45
2.1
44
88
1
136
34
5
27
32
1.79
54359429--54359483
25
2.2
25
84
9
69
52
1
0
45
1.11
54359614--54359774
47
3.6
46
69
18
140
48
3
3
45
1.34
54363957--54363992
16
2.2
16
95
0
63
27
0
36
36
1.57
54364205--54364259
25
2.2
25
84
9
69
52
1
0
45
1.11
54364390--54364538
47
3.3
46
69
17
132
47
3
3
45
1.35
54368578--54368722
73
2.0
73
91
0
236
41
17
5
35
1.73
54368775--54368846
13
5.5
13
73
15
58
40
16
2
40
1.63
54368916--54368944
12
2.4
12
100
0
58
37
10
6
44
1.65
54369161--54369434
45
6.1
45
76
10
167
24
22
14
39
1.91
54370955--54371004
26
2.0
27
88
11
79
44
6
4
46
1.47
54371347--54371392
23
2.0
23
87
8
67
43
0
2
54
1.12
54371538--54371613
39
2.0
38
85
12
102
44
0
1
53
1.08
54371739--54371786
22
2.4
19
86
10
60
25
14
4
56
1.56
54371739--54371790
19
2.5
21
87
9
72
25
15
3
55
1.57
54390431--54390473
18
2.5
17
79
20
54
32
11
16
39
1.84
54390516--54390554
16
2.5
16
87
4
53
38
15
7
38
1.76
54394978--54395019
21
2.0
21
95
0
75
28
11
19
40
1.87
54399285--54399327
17
2.5
17
82
14
52
62
4
0
32
1.15
54399363--54399398
17
2.1
18
89
5
56
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54399664--54399720
21
2.7
22
84
7
66
24
0
7
68
1.14
54399672--54399742
22
3.3
22
77
15
67
22
1
9
66
1.29
54406767--54407035
91
2.9
91
89
0
376
34
23
15
25
1.95
54411729--54411777
22
2.1
24
81
7
57
57
18
10
14
1.65
54417504--54417798
51
5.8
51
80
5
321
30
15
24
29
1.96
54417513--54417595
26
3.2
26
65
21
66
28
13
25
32
1.93
54417509--54417803
102
2.9
102
90
1
450
29
15
24
29
1.96
54418940--54418978
12
3.4
11
86
13
60
25
0
2
71
0.98
54420314--54420420
47
2.3
47
96
1
198
3
12
12
71
1.26
54420327--54420415
21
4.0
22
75
15
92
2
14
8
74
1.16
54424367--54424391
8
3.1
8
100
0
50
24
0
0
76
0.80
54424873--54424922
14
3.4
14
78
21
57
68
2
0
30
1.01
54427603--54427646
24
1.9
24
86
9
65
72
0
9
18
1.10
54439423--54439635
112
1.9
112
86
2
300
34
14
15
35
1.88
54444828--54444877
26
1.9
26
95
0
91
48
38
4
10
1.56
54447895--54447924
14
2.1
14
93
0
51
43
3
0
53
1.17
54449956--54450022
31
2.2
31
83
2
82
37
8
10
43
1.71
54450909--54451226
97
3.1
97
80
14
377
44
13
17
25
1.85
54450987--54451196
115
1.9
113
88
5
318
44
11
17
26
1.83
54451228--54451341
55
2.1
54
96
1
210
32
10
8
48
1.68
54452066--54452107
19
2.2
19
86
0
57
52
14
4
28
1.62
54453119--54453318
108
1.9
106
88
2
301
37
19
15
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54453985--54454021
17
2.1
18
90
5
58
45
5
5
43
1.49
54460683--54460886
108
1.9
106
88
4
311
35
20
16
27
1.94
54461416--54461452
12
3.0
13
88
7
51
78
0
5
16
0.93
54461554--54461596
12
3.4
12
81
12
50
51
4
4
39
1.44
54461558--54461597
14
2.9
14
80
0
53
50
5
5
40
1.46
54461677--54461728
3
17.0
3
76
4
50
63
0
5
30
1.18
54461677--54461740
15
4.4
15
76
13
62
62
1
6
29
1.29
54464956--54465011
15
3.9
14
76
23
62
30
12
0
57
1.36
54464956--54464992
14
2.6
14
91
4
56
27
13
0
59
1.35
54465151--54465180
15
1.9
16
93
6
53
20
0
0
80
0.72
54465242--54465269
3
9.3
3
100
0
56
35
0
0
64
0.94
54465387--54465431
21
2.1
22
83
4
56
15
2
11
71
1.24
54483619--54483689
22
3.1
22
75
15
56
52
2
0
45
1.15
54483665--54483723
10
6.0
10
75
16
52
50
5
0
44
1.24
54483637--54483699
7
7.9
8
75
16
51
55
1
0
42
1.09
54483668--54483729
30
2.0
31
87
3
90
51
4
0
43
1.23
54483761--54483842
25
3.4
25
79
6
105
45
0
0
54
0.99
54485691--54485741
23
2.2
23
92
0
84
45
21
5
27
1.75
54488006--54488337
49
6.6
50
80
7
289
28
18
28
24
1.98
54488052--54488288
50
4.6
50
85
4
269
27
18
29
23
1.98
54488006--54488337
99
3.3
99
81
4
301
28
18
28
24
1.98
54489817--54489861
23
2.0
23
90
0
72
40
20
8
31
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54492157--54492196
16
2.5
16
87
0
53
42
5
2
50
1.37
54492170--54492231
22
2.7
23
85
5
81
46
0
1
51
1.10
54494645--54494775
37
3.5
37
84
3
154
32
27
18
22
1.97
54502892--54502930
17
2.4
16
84
16
53
61
0
7
30
1.24
54506307--54506562
141
1.8
141
87
3
381
27
15
33
23
1.95
54512101--54512159
26
2.2
28
84
6
77
49
0
1
49
1.11
54512117--54512159
14
3.1
14
80
10
52
44
0
2
53
1.13
54518518--54518569
24
2.2
24
85
0
68
50
7
3
38
1.50
54522907--54522958
24
2.2
24
89
0
77
50
9
3
36
1.54
54524119--54524149
15
2.0
15
93
6
53
12
6
0
80
0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207