genome.fa.s19.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  148  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45320302--45320348	11	4.3	11	78	10	60	42	10	6	40	1.65
45320441--45320658	45	4.8	45	83	1	233	20	21	16	42	1.89
45321810--45321853	17	2.5	17	88	3	61	13	4	2	79	0.98
45342889--45342946	28	2.1	28	83	3	73	10	18	29	41	1.84
45346733--45346924	96	2.0	96	92	0	321	35	15	29	19	1.92
45356463--45356536	29	2.5	29	76	14	71	44	14	14	25	1.84
45356746--45356800	24	2.3	24	84	6	67	47	7	3	41	1.49
45358658--45358695	3	12.7	3	94	0	67	0	34	0	65	0.93
45361486--45361578	46	2.0	45	85	6	125	24	5	26	43	1.76
45364615--45364665	12	4.1	12	72	18	50	49	1	1	47	1.24
45364618--45364659	21	2.0	21	85	0	57	52	2	2	42	1.27
45365141--45365180	19	2.1	19	85	0	53	35	2	7	55	1.42
45373463--45374404	187	5.0	188	94	0	1568	28	24	15	31	1.96
45373463--45374404	375	2.5	376	93	0	1577	28	24	15	31	1.96
45381983--45382051	26	2.7	26	86	0	93	21	24	23	30	1.99
45394178--45394211	9	3.8	9	92	0	50	47	14	11	26	1.79
45394175--45394211	18	2.1	18	94	0	65	48	13	10	27	1.75
45400289--45400336	24	2.0	23	88	4	69	35	0	2	62	1.07
45404738--45404888	28	5.4	28	93	1	232	33	27	11	27	1.91
45409403--45409440	15	2.5	16	87	12	62	36	10	2	50	1.51
45420161--45420203	19	2.4	17	78	14	50	44	0	0	55	0.99
45420166--45420202	19	1.9	19	88	0	56	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45420157--45420209	25	2.2	24	86	10	72	45	0	0	54	0.99
45423676--45423709	13	2.6	13	100	0	68	26	8	8	55	1.59
45428726--45428840	43	2.7	43	88	1	167	26	14	25	33	1.94
45435747--45435831	32	2.7	32	96	3	154	37	14	10	37	1.80
45437972--45438001	4	7.5	4	100	0	60	23	0	76	0	0.78
45438007--45438060	25	2.2	24	83	6	72	44	1	0	53	1.11
45438053--45438090	18	2.1	19	85	5	51	44	2	0	52	1.14
45440049--45440102	23	2.4	23	87	6	76	50	7	5	37	1.54
45445903--45445942	17	2.5	17	88	8	57	57	2	0	40	1.12
45454334--45454377	19	2.3	19	84	7	54	27	2	4	65	1.23
45454327--45454384	28	2.0	28	83	9	73	25	3	3	67	1.22
45454346--45454384	19	2.1	18	85	4	51	28	2	2	66	1.18
45454822--45454868	19	2.6	18	75	24	53	59	0	6	34	1.23
45467948--45468011	21	3.0	20	71	8	56	21	20	15	42	1.89
45468686--45468715	14	2.1	14	100	0	60	60	6	0	33	1.23
45470520--45471175	50	13.2	50	74	4	569	31	21	21	25	1.98
45470514--45471175	100	6.7	100	87	1	886	31	21	21	25	1.98
45471186--45471287	41	2.5	41	79	1	107	29	22	15	32	1.95
45472812--45472852	3	13.7	3	84	0	55	31	0	2	65	1.05
45474953--45475004	9	5.7	9	76	13	52	26	3	1	67	1.18
45474991--45475062	18	3.8	18	81	7	90	26	5	2	65	1.28
45474918--45475098	58	3.2	55	77	14	158	27	6	2	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45474918--45475098	57	3.2	55	77	13	165	27	6	2	64	1.28
45475097--45475121	10	2.5	10	100	0	50	44	0	0	56	0.99
45475139--45475164	12	2.2	12	100	0	52	23	0	0	76	0.78
45479110--45479142	10	3.3	10	95	0	57	48	0	0	51	1.00
45480424--45480463	19	2.1	18	86	13	53	67	2	12	17	1.33
45481304--45481334	16	1.9	16	93	0	53	41	0	6	51	1.27
45489315--45489374	20	3.0	20	80	0	66	45	10	8	36	1.68
45491769--45491817	12	4.5	11	78	21	59	63	0	0	36	0.95
45491762--45491805	19	2.3	19	88	7	63	63	0	0	36	0.95
45491769--45491805	19	1.9	20	94	5	67	64	0	0	35	0.94
45492833--45492907	31	2.4	31	78	12	82	65	2	5	26	1.27
45493090--45493166	19	4.2	18	80	11	75	37	2	2	57	1.27
45493098--45493173	9	8.1	9	73	7	53	34	2	1	61	1.18
45493130--45493203	29	2.6	29	78	10	80	29	5	1	63	1.25
45493345--45493420	38	2.1	35	82	7	89	22	3	7	65	1.35
45496244--45496279	18	1.9	19	88	5	56	5	16	2	75	1.12
45497201--45497255	27	2.1	26	86	10	76	54	0	0	45	0.99
45497201--45497252	26	2.0	26	85	7	70	55	0	0	44	0.99
45515102--45515167	33	2.0	34	93	3	116	22	16	9	51	1.72
45515312--45515341	15	2.0	15	100	0	60	26	0	20	53	1.46
45515669--45515772	10	10.6	10	74	15	69	59	1	2	35	1.23
45515675--45515772	29	3.3	29	77	17	80	58	1	3	37	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45517396--45517442	21	2.2	22	77	11	53	27	0	0	72	0.85
45519266--45519361	46	2.1	46	98	0	183	37	21	17	22	1.94
45521204--45521246	5	8.2	5	80	10	50	25	2	0	72	0.97
45521204--45521251	10	4.7	10	85	12	62	27	2	0	70	0.98
45521418--45521492	22	3.2	20	68	31	51	21	2	10	65	1.36
45521403--45521508	51	2.1	50	98	1	203	21	3	11	63	1.43
45526718--45526744	13	2.1	13	100	0	54	48	7	14	29	1.71
45531466--45531508	12	3.8	11	81	12	52	44	2	16	37	1.60
45531464--45531508	22	2.0	22	87	8	65	42	2	15	40	1.59
45531473--45531515	21	2.0	21	86	8	61	44	6	11	37	1.68
45535957--45536100	25	5.8	25	79	3	139	25	24	25	25	2.00
45535957--45536100	50	2.9	50	82	2	164	25	24	25	25	2.00
45536745--45536786	20	2.2	20	87	12	61	61	4	16	16	1.50
45537919--45537959	20	2.0	20	100	0	82	19	14	14	51	1.77
45546148--45546282	51	2.7	51	77	3	139	31	21	17	29	1.96
45550641--45550724	30	2.8	30	87	0	123	20	28	30	20	1.97
45571194--45571243	11	4.5	11	75	9	57	10	2	48	40	1.48
45571172--45571244	22	3.3	22	72	11	60	12	4	49	34	1.59
45582810--45582845	18	2.0	18	100	0	72	55	22	5	16	1.62
45585029--45585158	70	1.9	68	87	6	190	50	6	23	20	1.72
45593353--45593458	52	2.0	52	100	0	212	27	13	26	33	1.93
45594458--45594491	17	2.0	18	88	11	54	47	0	11	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45597534--45597577	18	2.4	18	78	10	54	45	2	11	40	1.53
45598350--45598429	28	2.9	28	75	7	83	38	21	15	25	1.92
45601323--45601398	37	2.1	36	83	11	93	43	2	2	51	1.29
45612479--45613122	320	2.0	320	95	0	1155	33	17	20	28	1.95
45616383--45616412	12	2.5	12	94	0	51	23	40	30	6	1.80
45618044--45618145	50	2.0	50	100	0	204	28	9	22	39	1.86
45620576--45620607	15	2.1	15	100	0	64	18	6	6	68	1.32
45622259--45622329	17	3.8	18	72	22	58	36	2	4	56	1.34
45636311--45636388	39	2.0	39	100	0	156	38	23	15	23	1.92
45637942--45637966	13	1.9	13	100	0	50	32	16	16	36	1.90
45639574--45640032	47	9.6	47	90	2	684	32	8	29	28	1.87
45639574--45640032	192	2.4	192	94	1	798	32	8	29	28	1.87
45644235--45644277	23	1.9	22	85	4	59	74	6	13	4	1.19
45644234--45644283	23	2.2	21	80	13	55	74	8	14	4	1.20
45658624--45658770	41	3.6	41	87	0	204	19	28	16	35	1.94
45665448--45665490	10	4.2	10	80	14	52	79	2	0	18	0.85
45668113--45669158	515	2.0	515	96	0	1950	36	17	12	32	1.88
45671553--45671716	36	4.6	36	77	4	125	28	12	11	47	1.76
45671582--45671727	36	4.1	36	80	1	150	26	13	12	47	1.77
45672430--45672477	20	2.4	20	82	0	60	10	4	18	66	1.37
45674575--45674622	21	2.2	20	79	13	51	31	16	16	35	1.92
45674601--45674705	48	2.2	48	82	3	122	22	13	23	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45676331--45676357	11	2.5	11	100	0	54	14	22	22	40	1.90
45682481--45682536	29	2.0	28	89	3	85	33	28	14	23	1.94
45684166--45684190	13	1.9	13	100	0	50	52	0	0	48	1.00
45688610--45688664	27	2.0	27	82	6	67	27	29	0	43	1.55
45689194--45689223	15	1.9	16	93	6	53	46	13	6	33	1.69
45692235--45692335	43	2.3	43	88	3	141	32	1	11	53	1.49
45692273--45692394	43	2.8	44	80	8	110	35	1	15	47	1.56
45692766--45692811	18	2.6	18	80	16	51	58	2	6	32	1.36
45692746--45692805	20	3.0	20	72	22	54	55	5	6	33	1.48
45692769--45692871	30	3.5	28	71	16	75	57	2	4	34	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207