genome.fa.s19.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  23  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6802859--6802949	44	2.1	44	97	0	173	28	10	12	48	1.74
6804398--6804461	12	5.4	12	75	7	60	28	1	4	65	1.21
6804415--6804463	3	16.3	3	79	8	55	28	0	4	67	1.09
6804401--6804448	24	2.0	24	87	0	69	25	2	6	66	1.26
6804562--6804630	34	2.1	33	83	2	84	31	10	4	53	1.54
6818576--6818613	2	19.0	2	88	0	58	50	0	50	0	1.00
6820291--6820356	9	7.1	10	74	19	63	34	0	0	65	0.93
6820300--6820359	17	3.4	17	77	13	59	35	0	0	65	0.93
6820298--6820356	19	3.3	17	83	13	66	33	0	0	66	0.92
6820297--6820349	26	2.1	25	86	10	72	32	0	0	67	0.91
6826942--6827190	50	4.8	50	85	4	284	20	29	24	26	1.99
6826941--6827190	100	2.4	104	88	6	357	20	29	24	26	1.99
6827285--6827316	13	2.5	13	94	0	55	56	12	0	31	1.37
6827528--6827585	30	1.9	30	89	0	89	31	24	3	41	1.71
6832622--6832815	50	3.9	50	86	3	259	19	30	24	25	1.98
6832971--6833002	13	2.5	13	94	0	55	56	12	0	31	1.37
6833214--6833271	30	1.9	30	89	0	89	31	24	3	41	1.71
6840128--6840192	24	2.8	22	77	15	60	49	4	7	38	1.52
6840241--6840356	3	38.7	3	73	16	89	62	3	4	29	1.30
6841974--6842020	24	2.0	24	86	0	67	27	44	17	10	1.81
6844511--6844570	26	2.4	24	83	10	68	58	1	1	38	1.18
6849780--6850068	49	5.8	50	85	8	378	19	31	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6849780--6850067	100	2.9	99	86	7	379	19	31	21	26	1.98
6850163--6850194	13	2.5	13	94	0	55	56	12	0	31	1.37
6850406--6850463	30	1.9	30	89	0	89	31	24	3	41	1.71
6858012--6858074	25	2.6	25	82	5	67	47	4	7	39	1.54
6858121--6858229	3	36.7	3	74	18	86	63	3	3	29	1.29
6859855--6859901	24	2.0	24	86	0	67	27	44	17	10	1.81
6862413--6862457	21	2.1	21	88	8	65	60	0	0	40	0.97
6862413--6862460	23	2.1	23	88	7	71	62	0	0	37	0.95
6882881--6883142	93	2.8	90	77	12	269	30	18	19	32	1.96
6883305--6883336	15	2.1	15	94	0	55	21	6	34	37	1.79
6885352--6885393	6	7.0	6	100	0	84	33	0	0	66	0.92
6885352--6885411	18	3.4	17	88	6	59	36	1	0	61	1.06
6893715--6893740	13	2.0	13	100	0	52	30	0	15	53	1.42
6894385--6894456	20	3.8	20	77	14	80	43	2	1	52	1.24
6894410--6894461	25	2.1	25	82	7	61	40	1	0	57	1.10
6894442--6894558	59	1.9	61	84	8	159	43	2	4	49	1.35
6899118--6899245	9	13.9	9	68	16	50	32	7	3	57	1.42
6903729--6903809	29	2.8	29	74	18	80	24	16	2	56	1.52
6904283--6904327	21	2.1	21	100	0	90	17	15	8	57	1.63
6906500--6906542	22	2.0	22	95	0	77	44	11	4	39	1.62
6908925--6909123	109	1.8	109	81	4	249	27	24	19	29	1.98
6920419--6920459	18	2.4	18	88	11	61	60	4	0	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6920967--6921034	31	2.2	31	86	5	93	47	2	2	47	1.32
6920983--6921163	93	1.9	93	86	2	256	44	3	6	45	1.46
6927698--6927764	34	1.9	34	85	8	91	58	13	7	20	1.59
6927834--6927873	21	1.9	21	85	10	55	70	5	5	20	1.26
6929361--6929392	16	2.1	15	94	5	55	9	0	6	84	0.78
6932761--6932845	31	2.8	29	78	15	84	34	9	14	42	1.77
6933366--6933409	23	1.9	22	86	9	61	70	0	9	20	1.14
6935376--6935436	31	2.0	31	90	6	97	60	0	1	37	1.07
6935376--6935508	11	12.9	11	68	22	67	60	0	3	36	1.12
6935376--6935518	41	3.5	41	87	9	204	60	0	2	36	1.11
6937283--6937327	20	2.2	20	84	7	56	64	11	0	24	1.26
6938363--6938407	19	2.2	21	84	11	58	48	4	2	44	1.35
6939902--6939926	13	1.9	13	100	0	50	44	0	0	56	0.99
6940217--6940259	18	2.4	18	80	7	52	51	0	2	46	1.13
6943349--6943383	17	2.1	17	88	0	52	65	2	5	25	1.28
6947941--6947983	20	2.2	20	86	0	59	30	32	11	25	1.91
6949074--6949106	15	2.2	15	100	0	66	48	0	0	51	1.00
6949900--6949963	19	3.1	19	78	14	65	50	3	4	42	1.39
6952390--6952427	16	2.4	16	95	0	67	23	0	31	44	1.54
6952641--6952695	15	3.4	16	80	16	53	54	1	0	43	1.10
6952647--6952695	16	2.9	18	80	20	61	55	0	0	44	0.99
6952816--6952850	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6952734--6952998	136	1.9	138	89	1	408	43	3	4	47	1.41
6952548--6952868	156	2.1	156	96	0	572	43	3	6	46	1.46
6956419--6956475	30	1.9	29	85	3	78	7	7	42	43	1.58
6958865--6958974	33	3.3	33	81	11	136	31	8	17	42	1.78
6958921--6959023	51	2.0	51	96	3	190	28	7	18	45	1.77
6969955--6969998	17	2.4	18	88	7	63	72	0	0	27	0.85
6970073--6970121	25	2.0	24	92	4	80	61	2	0	36	1.08
6970080--6970119	19	2.0	20	86	13	57	62	2	0	35	1.09
6970507--6970549	12	3.5	12	78	15	52	53	2	0	44	1.13
6970588--6970673	29	3.1	29	66	20	83	46	2	2	48	1.27
6970595--6970684	26	3.3	26	73	8	90	46	4	2	46	1.35
6970558--6970682	55	2.2	56	87	4	171	46	3	3	47	1.34
6970847--6970886	16	2.5	16	87	0	53	25	20	7	47	1.75
6971231--6971281	22	2.3	22	82	0	57	7	13	13	64	1.48
6971515--6971555	21	2.0	21	86	13	59	39	7	14	39	1.74
6974632--6974681	21	2.4	21	80	3	57	44	0	14	42	1.44
6976824--6976880	18	3.0	18	76	14	69	29	24	19	26	1.98
6977035--6977113	24	3.5	22	78	8	79	41	20	18	18	1.90
6982442--6982782	109	3.1	108	86	5	465	33	17	17	31	1.94
6984075--6984125	12	4.2	12	71	14	50	76	0	11	11	1.02
6984801--6985058	88	2.9	88	90	1	374	28	22	17	31	1.96
6985031--6985230	44	4.5	44	69	18	155	29	25	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6984943--6985242	132	2.3	132	94	1	521	28	24	18	29	1.98
6994717--6994802	43	2.0	43	100	0	172	23	27	13	34	1.93
6995987--6996021	16	2.2	16	89	0	52	42	22	14	20	1.88
6996955--6997276	109	3.0	109	90	0	500	33	19	16	30	1.94
6997513--6997543	14	2.2	14	94	0	53	83	3	0	12	0.75
7004640--7004732	45	2.1	45	97	0	177	48	33	9	8	1.67
7006328--7006362	18	2.0	17	88	5	52	54	0	0	45	0.99
7006215--7006530	156	2.0	157	95	0	571	45	2	4	47	1.37
7006464--7006505	15	2.7	16	82	14	52	52	2	0	45	1.13
7006473--7006514	15	2.9	15	82	10	52	52	0	0	47	1.00
7006462--7006752	120	2.4	121	91	4	473	49	5	3	42	1.40
7006583--7006625	15	2.8	16	79	10	54	53	2	0	44	1.13
7006800--7006847	26	1.9	25	84	16	64	52	2	0	45	1.12
7006775--7006983	92	2.3	91	84	5	260	46	3	3	46	1.37
7011791--7011817	13	2.1	13	100	0	54	37	0	7	55	1.28
7013775--7013969	98	2.0	98	98	0	381	35	26	11	26	1.90
7014623--7014671	26	2.0	25	88	8	73	55	4	8	32	1.48
7015421--7015533	19	5.8	19	93	4	199	35	15	11	37	1.84
7015414--7015533	40	3.2	38	91	6	199	35	15	10	37	1.83
7015421--7015532	59	1.9	59	98	0	215	35	15	11	37	1.83
7015750--7016262	44	11.9	44	74	10	350	28	22	20	28	1.99
7015848--7016085	128	1.9	128	85	5	338	28	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7015705--7016255	172	3.2	172	85	5	647	27	23	19	28	1.98
7015795--7016262	217	2.2	216	87	3	656	28	23	19	28	1.98
7015842--7016321	217	2.2	216	84	2	554	27	23	20	27	1.99
7016339--7016825	44	11.1	44	65	9	195	24	26	20	28	1.99
7016247--7016899	132	4.9	132	95	0	1180	24	26	20	28	1.99
7017265--7017968	350	2.0	350	97	0	1336	28	22	14	35	1.93
7024286--7024477	98	2.0	98	97	0	366	36	25	11	26	1.90
7025135--7025183	26	2.0	25	92	8	82	57	4	6	32	1.42
7025264--7025290	10	2.7	10	100	0	54	51	7	0	40	1.30
7025943--7026074	19	6.8	19	88	6	203	37	14	9	37	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207