genome.fa.s19.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  150  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46055138--46055214	40	1.9	40	82	10	95	50	10	5	33	1.59
46055290--46055477	86	2.2	85	83	6	252	42	15	9	32	1.79
46055568--46055742	86	2.0	87	82	1	208	46	16	6	30	1.72
46058713--46058764	19	2.7	19	78	21	56	51	0	7	40	1.30
46059019--46059079	10	5.8	10	78	7	59	42	4	0	52	1.23
46059048--46059080	12	2.9	12	86	13	52	42	6	0	51	1.26
46059013--46059085	30	2.4	29	80	14	85	45	4	1	49	1.29
46059833--46059892	21	2.9	21	69	16	54	38	36	0	25	1.56
46059994--46060088	7	13.3	7	70	12	59	36	43	1	18	1.58
46059989--46060053	29	2.2	31	81	13	84	41	36	0	21	1.53
46060688--46060962	41	6.7	41	76	7	245	29	26	22	21	1.99
46060700--46060962	82	3.2	81	79	5	271	30	26	21	21	1.98
46060701--46060924	123	1.8	123	85	1	315	29	25	22	21	1.99
46060701--46060962	123	2.1	123	82	2	312	30	26	21	21	1.98
46061292--46061329	18	2.1	18	90	0	58	47	5	5	42	1.48
46063432--46063457	11	2.4	11	100	0	52	38	7	0	53	1.30
46063458--46063489	16	2.0	16	93	0	55	28	0	0	71	0.86
46063426--46063549	40	3.0	41	87	4	189	33	1	0	64	1.03
46063484--46063548	31	2.1	31	88	8	98	35	0	0	64	0.94
46063497--46063530	17	2.0	17	94	0	59	38	0	0	61	0.96
46063474--46063539	11	6.4	11	71	23	54	36	0	0	63	0.95
46063543--46063591	26	1.9	25	83	4	62	40	0	2	57	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46069249--46069288	21	1.9	21	84	0	53	37	32	10	20	1.85
46069298--46069362	21	3.1	21	75	18	73	24	1	32	41	1.64
46074027--46074067	17	2.4	17	87	4	55	78	7	0	14	0.96
46074040--46074065	11	2.4	11	100	0	52	84	7	0	7	0.77
46077416--46077782	150	2.4	153	84	7	460	43	8	4	43	1.56
46078518--46078596	39	2.0	39	90	0	122	39	27	15	17	1.90
46078522--46078897	42	9.1	42	88	1	492	34	23	18	22	1.96
46078561--46078897	125	2.7	126	88	2	500	34	23	19	23	1.96
46078573--46078897	167	1.9	167	92	1	544	33	23	19	23	1.97
46079312--46079344	8	4.2	8	84	7	50	0	12	0	87	0.53
46079312--46079343	15	2.2	14	94	5	55	0	12	0	87	0.54
46081849--46081987	51	2.7	51	80	4	147	25	15	26	31	1.96
46097536--46097585	20	2.5	20	80	6	57	74	4	8	14	1.20
46098349--46098572	51	4.4	52	68	18	157	46	10	2	40	1.51
46098200--46098606	153	2.7	148	87	3	546	43	10	4	41	1.58
46106795--46106829	17	2.1	16	89	5	52	51	2	8	37	1.47
46117663--46117696	16	2.2	15	89	5	50	44	0	0	55	0.99
46118358--46118411	25	2.1	26	83	10	67	33	3	1	61	1.25
46124135--46124408	41	6.6	41	91	0	431	27	20	28	22	1.99
46130594--46130788	51	3.9	50	82	4	230	31	29	16	23	1.96
46130601--46130785	101	1.8	101	89	3	291	31	28	16	23	1.96
46135734--46135765	15	2.1	15	100	0	64	25	6	28	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46135838--46135907	34	2.1	34	91	0	113	55	21	11	11	1.66
46147744--46147772	12	2.3	13	94	5	51	65	6	6	20	1.40
46152806--46152832	9	3.0	9	100	0	54	33	11	33	22	1.89
46157195--46157232	19	2.0	20	85	10	53	57	0	5	36	1.21
46157400--46157433	15	2.3	15	89	0	50	61	2	14	20	1.46
46159053--46159098	24	1.9	24	100	0	92	47	26	4	21	1.69
46159052--46159109	24	2.4	24	85	5	82	50	27	3	18	1.63
46166025--46166081	29	2.0	28	83	10	71	31	3	7	57	1.42
46168930--46168976	23	2.0	23	95	0	85	51	8	14	25	1.71
46168926--46168970	11	4.0	11	77	5	54	48	13	15	22	1.79
46169489--46169540	16	3.4	16	70	20	56	36	26	5	30	1.80
46169479--46169541	30	2.1	30	100	0	126	38	25	6	30	1.81
46170313--46170344	6	5.3	6	96	0	55	50	31	0	18	1.48
46175546--46175613	3	22.7	3	96	0	127	33	1	0	64	1.02
46176755--46176783	3	9.7	3	100	0	58	31	34	0	34	1.58
46177708--46177785	39	2.0	39	100	0	156	35	0	12	51	1.40
46177712--46177795	39	2.2	39	93	0	141	35	0	10	53	1.36
46178169--46178212	23	2.0	23	86	13	65	38	0	0	61	0.96
46178284--46178325	20	2.2	20	86	4	59	52	4	2	40	1.35
46178470--46178621	45	3.3	45	82	2	196	40	7	3	48	1.51
46182149--46182237	27	3.3	27	91	0	142	32	22	20	24	1.98
46182149--46182250	27	3.8	26	87	6	125	33	20	21	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46182246--46182304	24	2.5	24	86	5	84	20	6	25	47	1.74
46182476--46182710	32	7.4	32	77	1	168	22	19	21	36	1.95
46182702--46182765	22	2.9	21	73	13	58	21	17	12	48	1.80
46184302--46184372	34	2.1	33	81	2	79	29	5	15	49	1.67
46185940--46186914	487	2.0	487	99	0	1941	35	16	19	28	1.94
46190141--46190741	299	2.0	299	98	0	1148	32	20	14	32	1.92
46201835--46202106	40	6.8	40	93	1	445	26	21	28	23	1.99
46201827--46202106	122	2.3	122	93	1	476	26	21	28	23	1.99
46206254--46206288	18	1.9	19	88	11	56	22	37	0	40	1.55
46212207--46212237	15	2.1	15	100	0	62	35	19	0	45	1.51
46214419--46214445	11	2.5	11	100	0	54	22	7	18	51	1.70
46215839--46216032	92	2.1	92	88	5	286	44	4	4	46	1.41
46216010--46216108	52	2.0	52	80	11	118	45	6	2	46	1.39
46216065--46216098	17	2.0	17	94	0	59	44	5	0	50	1.26
46216070--46216117	17	3.0	16	79	17	55	45	6	2	45	1.40
46216158--46216192	18	2.0	17	88	5	52	40	0	0	60	0.97
46216105--46216338	129	1.8	130	95	0	425	42	2	5	49	1.39
46216287--46216321	18	2.0	17	88	5	52	45	0	0	54	0.99
46216275--46216546	144	1.9	147	94	3	487	47	2	3	46	1.34
46216431--46216465	18	2.0	17	88	5	52	45	0	0	54	0.99
46216627--46216721	45	2.1	45	88	1	138	32	27	5	34	1.79
46216700--46216756	16	3.2	16	73	21	60	31	35	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46216713--46216753	21	2.0	21	90	0	64	31	39	0	29	1.57
46219824--46219929	20	5.3	20	68	8	90	35	18	32	13	1.90
46219827--46219945	40	3.0	40	86	4	186	35	19	30	15	1.92
46222530--46222594	22	3.0	22	77	4	60	43	18	21	16	1.88
46222586--46222913	32	10.3	32	85	2	392	39	21	18	20	1.92
46223183--46223331	27	5.6	27	79	9	162	26	20	18	35	1.95
46223190--46223320	27	4.9	27	84	2	167	25	21	19	34	1.96
46225392--46225447	30	1.9	28	85	7	76	42	0	0	57	0.99
46227816--46228152	51	6.7	50	76	7	288	29	24	14	30	1.95
46227810--46228152	102	3.4	102	85	3	390	29	24	14	30	1.95
46227810--46228146	153	2.2	150	77	8	342	29	24	14	30	1.95
46234183--46234244	16	3.9	16	72	8	63	35	8	11	45	1.70
46250720--46250794	27	2.8	26	78	11	80	65	10	5	18	1.42
46261488--46261575	44	2.0	44	95	0	158	32	36	4	26	1.77
46262360--46262621	143	1.8	143	81	1	328	22	20	23	33	1.97
46264193--46264278	3	30.0	3	76	19	69	68	1	4	25	1.16
46264246--46264293	25	1.9	25	82	0	60	72	0	4	22	1.01
46264451--46264494	22	2.0	23	86	4	63	31	2	61	4	1.28
46274028--46274365	51	6.6	51	81	7	332	28	14	25	30	1.95
46274024--46274362	102	3.3	101	86	4	425	28	15	25	30	1.96
46274019--46274365	153	2.3	152	82	3	412	29	14	25	30	1.95
46279767--46279819	21	2.5	21	78	0	61	33	35	5	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46290048--46290079	15	2.1	15	100	0	64	46	12	31	9	1.73
46291497--46291556	25	2.4	25	83	10	70	23	6	0	70	1.11
46291510--46291562	6	8.5	6	78	15	54	22	3	0	73	0.99
46291511--46291562	19	2.7	20	80	17	56	23	3	0	73	1.00
46303019--46303061	19	2.1	20	83	12	52	44	6	4	44	1.52
46306862--46306910	26	1.9	25	83	4	62	57	2	6	34	1.35
46319251--46319295	23	1.9	24	82	13	58	24	6	15	53	1.66
46326964--46327060	48	2.0	48	95	0	176	23	12	20	43	1.86
46328807--46328850	17	2.4	19	85	7	56	40	4	4	50	1.43
46330004--46330031	6	4.7	6	100	0	56	17	17	17	46	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207