genome.fa.s19.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  169  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52223811--52224189	128	3.0	128	80	7	477	34	15	21	29	1.94
52223774--52224190	82	4.8	89	84	11	428	33	14	22	29	1.93
52225291--52225325	18	2.0	18	88	5	54	54	20	14	11	1.70
52232011--52232064	9	5.8	9	91	2	72	74	5	0	20	1.02
52237636--52237678	19	2.4	17	80	7	50	20	0	4	74	1.00
52240697--52240820	61	2.0	62	93	1	214	24	15	16	44	1.85
52246180--52246213	10	3.3	10	91	4	50	52	8	0	38	1.33
52246614--52246649	16	2.2	16	95	0	63	25	13	11	50	1.75
52253126--52253152	6	4.5	6	100	0	54	14	0	0	85	0.61
52264853--52264887	16	2.2	17	90	10	56	74	0	0	25	0.82
52265268--52265294	10	2.7	10	100	0	54	48	0	0	51	1.00
52266131--52266178	21	2.3	21	85	0	60	31	0	6	62	1.20
52271707--52271782	32	2.4	32	93	0	134	48	23	7	19	1.75
52271713--52271770	16	3.6	16	83	0	80	46	18	10	24	1.80
52271728--52271782	16	3.4	16	82	0	74	49	21	7	21	1.74
52274219--52274250	14	2.3	14	100	0	64	6	15	46	31	1.71
52279346--52279377	14	2.3	14	100	0	64	6	15	46	31	1.71
52282919--52282945	6	4.5	6	100	0	54	14	0	0	85	0.61
52288263--52288511	50	4.8	50	84	4	275	20	29	23	26	1.99
52288262--52288511	100	2.4	104	86	6	348	21	29	23	26	1.99
52288606--52288637	13	2.5	13	94	0	55	56	12	0	31	1.37
52288849--52288905	30	1.9	30	88	0	87	31	22	3	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52294086--52294162	24	3.2	24	76	10	84	37	19	20	22	1.94
52294060--52294162	49	2.1	49	85	0	134	35	16	23	24	1.95
52294086--52294160	25	3.0	25	77	9	82	38	18	21	21	1.93
52297493--52297528	17	2.1	18	90	10	58	75	0	0	25	0.81
52298749--52298796	21	2.3	21	85	0	60	31	0	6	62	1.20
52302191--52302237	21	2.2	22	92	3	78	21	38	19	21	1.94
52306424--52306501	30	2.6	30	100	0	156	19	37	32	11	1.87
52307553--52307591	16	2.4	17	91	4	62	10	7	5	76	1.13
52312891--52312946	28	2.0	28	92	0	94	50	7	7	35	1.57
52313979--52314135	50	3.1	50	67	12	115	29	18	22	28	1.97
52313976--52314168	100	1.9	100	89	2	298	30	18	22	28	1.97
52314175--52314514	44	7.8	44	71	12	191	32	19	20	28	1.97
52314160--52314638	218	2.2	219	85	2	633	31	19	21	27	1.97
52315448--52315489	22	2.0	21	90	4	66	21	2	4	71	1.16
52315454--52315490	18	2.2	18	90	9	60	21	2	2	72	1.09
52316065--52316125	3	20.3	3	84	0	77	32	4	1	60	1.28
52316823--52316861	16	2.4	17	91	4	62	10	7	5	76	1.13
52318601--52318676	32	2.4	32	95	0	134	47	21	9	22	1.78
52318601--52318676	16	4.8	16	75	4	82	47	21	9	22	1.78
52320404--52320442	21	1.9	21	89	5	62	28	0	7	64	1.21
52328491--52328540	26	1.9	26	92	8	84	24	8	8	60	1.52
52337767--52337875	54	2.0	54	96	0	200	27	14	1	55	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52338983--52339026	20	2.3	19	84	4	52	43	2	0	54	1.12
52340931--52340993	20	3.2	19	78	8	72	38	12	12	36	1.82
52345453--52345500	21	2.3	21	92	0	78	31	20	14	33	1.93
52349562--52349597	18	1.9	19	88	5	56	58	13	13	13	1.64
52352536--52352582	21	2.2	22	92	3	78	21	38	19	21	1.94
52356716--52356762	17	2.7	17	83	9	51	17	4	6	72	1.22
52357612--52357660	25	2.0	25	91	0	80	30	8	4	57	1.47
52363240--52363279	21	2.0	21	85	5	55	12	22	12	52	1.72
52373306--52373466	39	3.8	39	76	14	135	38	19	21	21	1.94
52377144--52377341	101	2.0	101	95	0	360	31	13	14	40	1.84
52387723--52387749	13	2.1	13	100	0	54	29	0	22	48	1.51
52390033--52390282	43	5.8	42	81	1	187	26	27	19	27	1.99
52390033--52390282	128	1.9	129	82	0	313	26	27	19	27	1.99
52390049--52390300	86	2.9	86	82	3	276	26	27	18	27	1.98
52390099--52390300	43	4.7	43	82	3	228	26	25	18	29	1.98
52392589--52392631	21	2.0	21	90	0	68	51	16	6	25	1.69
52392542--52392676	68	2.0	68	91	0	216	49	14	8	27	1.72
52392669--52392761	30	3.1	30	81	7	109	52	10	10	25	1.68
52400817--52400991	41	4.3	41	86	0	253	27	32	20	20	1.97
52407038--52407318	136	2.1	137	89	3	433	40	4	11	43	1.61
52407308--52407370	31	2.1	31	87	3	92	31	1	9	57	1.40
52407892--52407938	24	1.9	24	83	12	60	31	6	6	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52408095--52408130	3	12.0	3	93	0	63	30	0	2	66	1.06
52408755--52408789	3	11.7	3	100	0	70	68	0	0	31	0.90
52410939--52410982	18	2.4	18	84	3	52	11	4	0	84	0.77
52411352--52411424	30	2.4	30	88	4	103	20	9	17	52	1.73
52414844--52414954	42	2.7	42	83	2	145	50	16	17	16	1.79
52414855--52414954	21	4.8	21	77	3	94	50	15	18	17	1.79
52419612--52419648	18	2.1	18	90	10	58	62	5	0	32	1.18
52421306--52421902	50	11.9	50	71	10	319	24	20	23	32	1.98
52421293--52421901	100	6.1	98	83	6	622	24	19	22	33	1.97
52421288--52421900	200	3.1	198	84	6	724	24	19	22	32	1.97
52423205--52423256	7	7.4	7	85	8	61	11	11	5	71	1.31
52428983--52429019	18	2.1	18	90	10	58	62	5	0	32	1.18
52430229--52430288	5	12.2	5	76	16	54	20	0	3	76	0.92
52430229--52430281	22	2.3	24	81	18	69	20	0	1	77	0.87
52430229--52430283	23	2.5	22	82	11	67	20	0	1	78	0.85
52431590--52431635	18	2.7	17	93	6	76	67	0	6	26	1.15
52431781--52431937	24	6.6	24	75	10	153	57	3	5	33	1.40
52431764--52431982	24	9.5	22	73	16	101	57	3	6	32	1.41
52433094--52433126	17	1.9	17	100	0	66	18	6	36	39	1.75
52435555--52435983	142	3.0	142	95	0	768	30	13	16	39	1.87
52441817--52441910	47	2.0	47	100	0	188	29	31	6	31	1.83
52443005--52443131	18	6.9	18	86	3	164	34	16	19	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52444300--52444361	31	2.0	31	100	0	124	32	9	16	41	1.80
52444881--52444942	31	2.0	32	87	3	90	70	11	14	3	1.27
52450460--52450520	31	2.0	31	100	0	122	34	9	13	42	1.77
52452821--52452866	21	2.2	20	80	3	56	60	6	2	30	1.34
52453660--52453693	17	1.9	18	94	5	61	32	0	0	67	0.91
52458739--52458908	43	4.0	42	76	14	170	22	18	27	31	1.97
52458751--52458908	84	1.9	84	84	7	214	22	18	27	31	1.97
52459069--52459100	16	1.9	17	93	6	57	40	0	21	37	1.54
52462912--52462942	15	2.1	15	93	0	53	74	9	16	0	1.07
52463008--52463206	103	2.0	102	88	4	298	44	15	15	24	1.85
52463269--52463765	99	4.9	101	78	13	451	27	15	14	41	1.86
52463456--52463757	102	3.1	98	80	9	280	29	15	13	41	1.86
52494900--52495010	41	2.7	41	80	2	107	18	18	28	33	1.95
52496092--52496597	30	16.7	30	87	0	661	31	10	17	40	1.84
52502780--52502819	19	2.1	19	85	4	53	50	0	0	50	1.00
52503843--52504525	228	3.0	227	80	2	731	28	25	24	20	1.99
52507623--52507815	50	3.8	50	92	0	314	20	30	23	25	1.98
52507910--52507939	13	2.3	13	94	0	51	50	13	3	33	1.58
52527973--52528026	28	1.9	28	96	0	99	29	11	16	42	1.83
52531315--52531343	10	3.0	10	95	5	51	51	0	10	37	1.36
52532496--52532559	30	2.1	30	82	0	74	32	20	17	29	1.95
52536105--52536201	42	2.3	42	85	3	124	25	24	30	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52540438--52540666	43	5.3	43	88	0	307	31	29	15	22	1.95
52545193--52545255	20	3.1	20	76	15	67	46	3	0	50	1.17
52545193--52545252	10	5.8	10	78	11	50	48	3	0	48	1.18
52545185--52545258	30	2.5	30	80	8	80	50	2	1	45	1.24
52545787--52545859	13	5.1	14	73	15	53	49	27	0	23	1.50
52545950--52545988	14	2.8	14	84	0	51	51	33	0	15	1.44
52546184--52546332	41	3.7	41	88	4	196	30	28	18	22	1.97
52546425--52546485	32	1.9	32	93	0	104	26	31	18	24	1.97
52547359--52547856	84	5.8	84	77	10	330	44	10	11	33	1.74
52547600--52547628	5	5.8	5	100	0	58	79	0	0	20	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207