genome.fa.s19.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  57  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16834329--16834437	40	2.8	38	77	5	112	34	21	19	24	1.96
16834382--16834457	39	1.9	39	82	10	93	36	18	22	22	1.95
16834492--16834692	41	4.9	40	85	4	242	20	21	27	29	1.98
16835250--16835302	14	3.7	14	72	5	52	16	3	37	41	1.67
16835242--16835306	29	2.3	29	89	7	98	16	3	41	38	1.64
16835267--16835339	37	2.0	37	89	5	112	19	2	42	35	1.65
16835722--16835755	18	1.9	17	88	5	50	79	0	2	17	0.86
16836534--16836603	17	3.9	17	72	17	52	21	1	44	32	1.61
16836512--16836606	38	2.5	38	87	3	138	22	1	40	36	1.61
16836584--16836624	14	2.7	15	85	11	57	17	0	51	31	1.46
16838073--16838125	28	2.0	27	82	10	65	20	20	11	47	1.81
16839156--16839202	21	2.2	21	84	0	58	31	14	46	6	1.70
16839343--16839394	19	2.7	19	75	21	54	30	1	7	59	1.36
16839521--16839626	44	2.4	44	90	0	167	40	20	24	14	1.90
16839595--16839730	43	3.2	42	85	6	193	34	19	24	21	1.96
16841152--16841234	38	2.2	38	93	0	139	31	15	14	38	1.88
16841279--16841666	191	2.0	191	92	0	650	23	12	29	34	1.91
16844671--16844710	21	1.9	21	85	10	55	22	2	12	62	1.42
16845712--16845752	18	2.3	18	100	0	82	26	19	21	31	1.97
16848304--16848349	19	2.4	19	85	7	58	23	19	10	45	1.82
16856871--16857417	140	3.9	140	81	7	548	32	19	21	27	1.97
16859166--16859225	20	2.9	21	83	11	63	20	1	15	63	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16859704--16859737	18	1.9	17	88	5	50	29	11	0	58	1.33
16861784--16861976	54	3.6	53	78	10	151	32	23	16	27	1.96
16861783--16861996	27	8.0	26	75	11	130	32	24	15	27	1.95
16861838--16861997	53	3.0	53	80	2	178	30	24	16	29	1.96
16863716--16863846	60	2.2	60	81	4	147	39	6	14	39	1.71
16863909--16863946	19	2.0	19	100	0	76	47	31	15	5	1.68
16864516--16864589	37	2.0	37	81	5	87	47	5	1	45	1.34
16866300--16866341	16	2.6	16	96	0	75	47	0	7	45	1.30
16866548--16866581	16	2.1	16	100	0	68	70	11	0	17	1.16
16868654--16868695	22	1.9	22	85	9	59	30	9	14	45	1.77
16869881--16869913	16	2.1	16	94	0	57	9	6	27	57	1.53
16870989--16871029	20	2.1	19	86	4	55	51	0	2	46	1.14
16871044--16871084	18	2.3	19	83	12	59	63	0	0	36	0.95
16871077--16871101	10	2.5	10	100	0	50	76	8	0	16	1.02
16871059--16871113	29	1.9	28	85	3	74	67	3	0	29	1.08
16872834--16872930	50	1.9	50	83	4	124	19	24	20	35	1.96
16872857--16873111	25	10.4	25	69	9	105	20	24	20	34	1.96
16880297--16880426	24	5.4	24	76	8	102	17	27	22	32	1.96
16880345--16880452	48	2.2	50	75	11	116	18	25	22	33	1.97
16880369--16880470	25	4.2	25	77	9	86	20	27	22	29	1.99
16882987--16883038	24	2.2	24	85	0	68	40	3	1	53	1.30
16884316--16884373	11	5.4	11	70	17	50	36	3	1	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16884307--16884375	31	2.2	31	97	0	129	33	2	1	62	1.19
16884338--16884428	44	2.0	46	91	6	150	35	2	0	62	1.07
16884400--16884439	21	2.0	21	90	5	64	40	2	0	57	1.12
16885328--16885374	19	2.5	19	72	6	51	55	2	2	40	1.24
16885474--16885526	21	2.5	21	93	0	88	30	37	9	22	1.86
16887049--16887120	26	2.8	26	80	4	83	55	1	6	36	1.35
16887243--16887309	10	6.6	10	70	20	50	41	0	2	55	1.15
16887269--16887309	21	2.0	21	90	0	64	46	0	0	53	1.00
16887801--16887835	7	5.0	7	96	0	61	28	54	14	2	1.54
16888552--16888612	28	2.2	29	80	14	74	45	9	8	36	1.67
16888605--16888737	70	1.9	67	86	4	185	30	12	14	42	1.83
16897227--16897257	14	2.1	15	94	5	55	51	0	3	45	1.17
16897225--16897261	15	2.4	16	86	13	60	51	0	2	45	1.15
16908896--16908929	13	2.6	13	85	0	50	26	29	26	17	1.98
16911746--16911789	14	3.0	14	83	6	52	68	4	2	25	1.20
16911746--16911770	7	3.6	7	100	0	50	72	0	0	28	0.86
16913182--16913218	3	12.3	3	91	0	56	35	2	0	62	1.10
16913353--16913385	16	2.1	16	94	0	57	39	0	3	57	1.14
16914637--16914686	23	2.1	24	85	7	66	52	8	14	26	1.68
16920082--16920133	19	2.7	20	80	11	63	28	13	5	51	1.64
16922034--16922088	20	2.8	21	83	10	80	32	7	10	49	1.65
16925814--16925912	29	3.4	28	88	5	137	37	11	26	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16925840--16925944	29	3.6	29	83	6	97	38	8	27	25	1.85
16929670--16929714	23	2.0	23	82	8	56	37	15	13	33	1.86
16932186--16932314	30	4.3	30	76	3	134	40	11	26	21	1.87
16932157--16932284	60	2.2	59	91	1	211	38	11	26	23	1.89
16932184--16932314	60	2.2	60	87	2	183	40	11	25	22	1.87
16932158--16932380	90	2.5	90	77	5	254	37	11	26	25	1.89
16932303--16932378	30	2.5	30	86	0	98	38	7	23	30	1.83
16937725--16937828	52	2.0	52	92	0	172	40	15	13	30	1.86
16946378--16946444	32	2.1	32	91	0	107	31	13	20	34	1.92
16947280--16947383	27	3.8	27	77	6	102	43	19	19	18	1.89
16947447--16947552	27	4.0	26	75	9	97	40	18	20	19	1.92
16947210--16947651	181	2.4	181	79	5	457	38	16	22	21	1.93
16952941--16952990	19	2.5	20	78	15	59	24	12	6	58	1.56
16955308--16955361	20	2.7	20	82	0	63	42	22	9	25	1.83
16958294--16958496	100	2.0	100	85	3	275	51	3	3	40	1.39
16958528--16958554	13	2.1	13	100	0	54	59	0	0	40	0.98
16961323--16961357	18	1.9	18	94	0	61	25	17	20	37	1.94
16975267--16975327	31	2.0	31	86	0	86	22	14	9	52	1.71
16975275--16975326	16	3.3	16	75	5	61	21	11	9	57	1.62
16975749--16975815	30	2.2	31	86	2	91	49	13	17	19	1.80
16979307--16979378	35	2.1	35	97	0	135	47	11	2	38	1.54
16981058--16981167	57	1.9	58	90	1	177	28	20	6	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16981049--16981177	57	2.3	55	81	6	159	27	20	5	46	1.72
16988357--16988422	33	2.0	33	100	0	132	45	12	15	27	1.81
16994421--16994479	29	2.0	29	96	0	109	30	15	22	32	1.94
16995823--16995868	23	2.0	23	100	0	92	34	0	13	52	1.40
16996074--16996114	21	2.0	21	85	9	57	34	2	7	56	1.40
16996131--16996176	18	2.6	18	86	3	58	43	0	2	54	1.12
16996336--16996428	45	2.1	44	90	9	145	37	25	3	33	1.72
16996410--16996465	16	3.5	16	90	0	85	28	30	3	37	1.74
17004776--17004816	16	2.6	16	82	17	59	80	2	17	0	0.82
17004776--17004823	13	3.5	13	77	8	51	83	2	14	0	0.74
17016773--17016804	11	2.9	11	95	0	55	28	28	0	43	1.55
17018629--17018671	18	2.4	18	88	0	59	18	27	9	44	1.80
17018912--17018959	21	2.3	22	79	17	57	29	41	16	12	1.85
17019092--17019261	49	3.5	49	95	0	295	43	3	8	44	1.51
17020664--17020772	41	2.7	41	88	8	168	20	21	26	32	1.97
17021027--17021059	15	2.3	15	94	5	59	33	0	33	33	1.58
17021162--17021207	14	3.3	14	84	0	56	23	0	43	32	1.54
17021162--17021207	21	2.2	21	84	7	58	23	0	43	32	1.54
17021611--17021693	39	2.1	39	82	4	96	40	16	20	21	1.91
17022523--17022604	38	2.2	38	88	0	119	21	12	8	57	1.61
17029067--17029105	18	2.2	17	86	13	53	33	0	20	46	1.51
17029210--17029238	8	3.6	8	100	0	58	24	13	27	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17029324--17029399	23	3.3	23	96	0	143	21	21	26	31	1.98
17032865--17033064	43	4.7	43	90	0	283	25	18	25	30	1.98
17037240--17037290	27	2.0	26	84	7	68	50	7	5	35	1.55
17037251--17037365	27	4.5	27	71	14	91	50	7	6	35	1.56
17037251--17037366	13	9.1	13	75	10	105	50	7	6	35	1.56
17037258--17037366	40	2.9	38	85	8	152	49	8	5	36	1.56
17037258--17037368	35	3.0	37	86	6	154	49	9	5	36	1.57
17038337--17038376	18	2.2	18	100	0	80	57	5	15	22	1.57
17039231--17039267	2	19.0	2	94	5	67	48	0	0	51	1.00
17039505--17039535	16	1.9	16	93	0	53	41	6	29	22	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207