genome.fa.s19.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  183  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55955018--55955053	10	3.7	10	92	3	56	77	11	11	0	0.99
55955877--55956073	108	1.8	108	87	4	299	24	17	10	47	1.78
55956967--55957753	46	17.1	46	86	4	1004	25	15	25	32	1.95
55956965--55957753	138	5.7	138	91	1	1215	25	15	25	32	1.95
55957967--55958653	128	5.4	128	92	1	1090	31	22	20	25	1.98
55957975--55958653	44	15.9	44	65	17	214	31	22	20	25	1.98
55960147--55960194	18	2.6	19	87	6	73	35	6	0	58	1.23
55967186--55967230	23	2.0	22	82	4	54	35	2	0	62	1.08
55971191--55971219	14	2.1	14	100	0	58	44	6	20	27	1.77
55975688--55975713	6	4.3	6	100	0	52	15	0	46	38	1.46
55975764--55976067	95	3.2	94	80	2	322	37	3	18	40	1.68
55976099--55976516	126	3.3	126	90	1	649	32	18	21	27	1.97
55989670--55989886	55	4.0	55	84	2	249	50	14	7	28	1.69
55989670--55989886	108	2.0	110	82	1	267	50	14	7	28	1.69
56006800--56006834	12	3.2	11	88	11	54	8	25	2	62	1.38
56030428--56030473	21	2.2	21	81	14	60	63	4	2	30	1.26
56030460--56030499	17	2.3	18	87	8	57	67	0	7	25	1.16
56034874--56034917	2	22.0	2	100	0	88	50	0	0	50	1.00
56035284--56035322	17	2.4	16	83	8	53	64	5	0	30	1.15
56035254--56035354	49	2.1	46	79	15	116	63	2	0	33	1.10
56035338--56035387	16	3.3	15	75	13	57	70	0	2	28	0.99
56035287--56035411	9	14.8	8	67	20	51	67	2	1	28	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56035561--56035629	9	7.7	9	71	12	52	36	1	2	59	1.21
56035570--56035620	26	2.0	26	84	0	66	37	1	1	58	1.20
56035560--56035610	18	2.9	17	78	16	59	33	1	3	60	1.26
56039511--56039547	19	1.9	19	94	0	65	51	8	5	35	1.55
56040101--56040204	31	3.3	31	70	12	104	36	12	9	41	1.76
56040134--56040229	31	3.0	32	69	14	90	34	17	12	35	1.88
56040100--56040229	63	2.1	63	94	0	224	34	15	11	38	1.83
56042824--56042891	29	2.4	27	77	15	66	33	2	5	57	1.38
56043175--56043209	15	2.3	15	100	0	70	40	5	11	42	1.65
56046725--56046788	28	2.4	28	86	5	87	43	0	0	56	0.99
56046844--56046877	17	2.0	17	100	0	68	41	0	0	58	0.98
56047024--56047129	44	2.5	41	78	20	128	36	31	2	29	1.72
56047041--56047131	46	2.0	44	91	8	148	39	30	3	26	1.72
56047111--56047147	16	2.3	16	90	0	56	21	29	5	43	1.75
56053102--56053143	22	1.9	22	85	9	59	26	7	0	66	1.17
56054008--56054338	42	7.8	42	82	2	322	27	20	20	31	1.98
56054003--56054338	126	2.6	126	81	3	379	28	20	19	30	1.97
56054723--56054773	21	2.4	21	90	0	75	1	45	19	33	1.62
56066607--56066689	27	3.1	27	94	0	148	32	0	14	53	1.42
56066607--56066680	9	8.2	9	84	0	94	32	0	16	51	1.45
56066897--56067031	16	8.7	15	70	22	84	37	2	13	45	1.58
56066882--56067288	93	4.5	92	88	7	616	37	3	12	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56066985--56067040	9	6.8	9	73	19	59	35	0	16	48	1.46
56066985--56067126	40	3.4	40	70	17	128	36	2	14	47	1.56
56067055--56067288	43	5.0	50	69	18	178	38	3	11	45	1.58
56067075--56067116	16	2.7	15	82	7	57	40	2	11	45	1.54
56066882--56067288	178	2.2	184	93	3	709	37	3	12	46	1.59
56067161--56067206	16	2.9	16	87	3	58	41	0	8	50	1.33
56069184--56069217	15	2.3	15	89	0	50	55	35	0	8	1.31
56070004--56070379	206	1.8	205	85	3	531	25	21	20	32	1.97
56070190--56070828	230	2.8	227	82	6	725	24	21	22	30	1.99
56078389--56078443	18	2.9	20	76	15	55	60	1	3	34	1.25
56081927--56081982	27	2.1	26	83	9	69	42	0	5	51	1.24
56086576--56086857	47	5.7	47	72	12	240	38	17	7	36	1.78
56086527--56086912	157	2.5	157	95	1	688	38	16	7	37	1.77
56103786--56103890	43	2.5	43	79	3	124	30	20	20	27	1.98
56112421--56112478	31	1.9	31	92	3	100	34	12	10	43	1.76
56114567--56114609	19	2.1	22	87	12	65	41	4	0	53	1.21
56117630--56117668	19	1.9	19	85	10	51	33	0	7	58	1.26
56117838--56117871	8	4.2	8	88	11	52	70	0	0	29	0.87
56117838--56117871	15	2.1	17	89	10	54	70	0	0	29	0.87
56119354--56119384	16	1.9	16	93	0	53	51	0	22	25	1.48
56122478--56122538	19	3.1	19	81	9	70	50	0	1	47	1.10
56126063--56126092	2	15.0	2	100	0	60	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56133020--56133068	21	2.4	22	86	10	68	55	0	0	44	0.99
56132986--56133083	37	2.6	37	79	10	94	57	3	1	38	1.21
56138936--56138985	21	2.5	20	86	3	64	54	2	2	42	1.23
56142478--56142533	17	3.4	16	82	7	67	66	5	1	26	1.23
56142930--56142967	20	1.9	20	84	10	51	42	0	0	57	0.98
56148122--56148211	18	5.2	18	87	5	132	27	22	17	32	1.97
56154951--56154978	9	3.1	9	100	0	56	57	10	0	32	1.33
56154921--56155121	59	3.1	68	84	13	307	45	8	4	40	1.57
56155110--56155151	16	2.6	16	92	0	66	42	7	2	47	1.43
56156216--56156261	16	2.7	17	78	15	51	32	2	6	58	1.36
56156241--56156272	15	2.1	15	94	0	55	34	0	6	59	1.23
56157727--56157922	106	1.8	106	85	2	277	30	5	25	39	1.77
56160307--56160356	24	2.1	24	81	7	57	50	20	4	26	1.66
56160382--56160477	22	4.2	22	72	5	57	41	20	13	23	1.88
56160390--56160524	24	5.8	23	70	8	85	42	21	9	25	1.83
56160280--56160476	98	2.0	98	91	0	322	45	21	11	21	1.83
56160378--56160524	69	2.1	69	92	0	240	43	21	10	24	1.84
56161289--56161441	41	3.7	41	85	0	198	33	26	21	18	1.96
56162510--56162534	13	1.9	13	100	0	50	40	24	4	32	1.73
56163931--56164003	32	2.5	27	76	19	83	26	2	17	53	1.57
56163944--56164004	32	1.9	32	93	0	104	27	3	16	52	1.59
56165240--56165277	20	1.9	20	94	0	67	44	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56165360--56165397	19	2.0	19	100	0	76	47	15	10	26	1.78
56165389--56165419	14	2.2	14	94	0	53	41	16	6	35	1.74
56166036--56166060	7	3.6	7	100	0	50	60	0	0	40	0.97
56167028--56167058	10	3.0	10	95	4	53	48	0	0	51	1.00
56168882--56168918	11	3.2	12	85	14	51	70	0	0	29	0.88
56168966--56169211	133	1.8	135	83	5	327	51	8	12	27	1.69
56171648--56171697	18	2.8	18	81	6	57	12	48	8	32	1.69
56171658--56171697	6	6.7	6	94	0	62	12	50	5	32	1.62
56173382--56173428	4	11.8	4	82	8	60	48	25	2	23	1.62
56175389--56175542	45	3.5	44	78	3	150	36	22	14	27	1.92
56176575--56176615	14	2.9	15	85	10	59	7	14	0	78	0.96
56177392--56177418	13	2.1	13	100	0	54	29	0	0	70	0.88
56179844--56179876	17	1.9	17	93	0	57	57	0	6	36	1.23
56185175--56185249	27	2.8	28	78	15	86	60	1	5	33	1.28
56185208--56185369	9	16.7	9	68	17	67	58	4	2	34	1.31
56185208--56185369	29	5.5	29	70	17	84	58	4	2	34	1.31
56185315--56185372	19	3.1	19	80	7	73	60	3	1	34	1.24
56201183--56201329	66	2.1	66	82	9	179	42	6	6	44	1.55
56201334--56201366	16	2.1	16	94	0	57	48	9	0	42	1.35
56201341--56201389	22	2.2	22	88	0	71	46	2	0	51	1.12
56201363--56201394	17	1.9	17	93	6	57	56	0	0	43	0.99
56201553--56201593	21	2.0	21	95	0	73	19	9	46	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56202905--56202938	16	2.1	16	88	0	50	47	2	0	50	1.16
56205906--56205956	25	2.0	25	85	14	70	50	0	0	49	1.00
56210521--56210545	1	25.0	1	100	0	50	0	0	0	100	0.00
56222985--56223036	18	2.9	18	77	5	52	48	1	1	48	1.24
56223032--56223077	19	2.3	20	82	14	60	39	2	6	52	1.40
56225661--56225737	32	2.4	32	80	0	91	24	24	6	44	1.77
56230094--56230171	32	2.4	32	80	6	95	24	23	6	46	1.75
56233374--56233778	216	1.9	216	97	0	765	50	16	17	16	1.78
56233790--56234108	89	3.6	88	79	7	380	54	16	14	14	1.72
56233705--56234095	172	2.3	173	92	1	642	52	17	14	15	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207