genome.fa.s19.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  138  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42374723--42374785	31	2.1	31	87	3	92	42	3	6	47	1.44
42380838--42380923	43	2.0	43	93	0	145	25	22	16	36	1.94
42385596--42385750	48	3.3	50	65	23	127	37	9	12	40	1.76
42385569--42385788	93	2.4	93	92	1	370	36	10	11	41	1.76
42388080--42388249	95	1.8	92	85	11	238	48	13	2	35	1.58
42398266--42398310	23	2.0	23	95	0	81	44	15	4	35	1.67
42398267--42398316	23	2.2	23	88	0	73	46	16	6	32	1.71
42401177--42401224	14	3.3	14	79	5	51	43	8	2	45	1.45
42407462--42407510	17	2.9	17	96	0	89	8	48	20	22	1.75
42409028--42409349	111	2.9	110	93	1	547	30	16	18	34	1.93
42410420--42410629	107	2.0	107	85	1	287	38	19	16	25	1.92
42411824--42411997	42	4.1	42	80	6	165	35	22	17	24	1.96
42412337--42412427	43	2.1	43	87	2	130	45	9	10	34	1.73
42414778--42414880	29	3.5	29	67	19	77	66	7	14	11	1.45
42415175--42415218	22	1.9	23	86	9	63	34	6	4	54	1.47
42416139--42416188	22	2.3	21	82	3	64	46	30	0	24	1.53
42416301--42416411	40	2.7	39	86	6	150	28	29	20	20	1.98
42416472--42416642	40	4.3	40	79	2	157	22	19	22	35	1.96
42419387--42419483	29	3.5	28	80	8	108	56	1	8	34	1.36
42421012--42421051	16	2.5	16	95	0	71	20	12	37	30	1.89
42421421--42421591	44	3.9	44	73	12	127	27	22	19	30	1.98
42421460--42421633	89	2.0	89	86	2	242	27	23	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42421471--42421626	44	3.5	44	75	1	150	26	21	21	30	1.98
42434024--42434089	29	2.3	29	86	5	89	57	1	9	31	1.39
42434419--42434485	3	22.3	3	78	6	55	58	2	5	32	1.38
42440082--42440119	20	2.1	18	85	14	51	26	0	18	55	1.43
42441528--42441582	20	2.8	20	89	10	94	49	0	29	21	1.50
42444551--42444622	20	3.6	20	94	0	126	22	27	0	50	1.50
42444560--42444592	15	2.1	16	88	5	50	21	27	0	51	1.48
42448898--42448957	24	2.6	25	84	10	74	55	0	0	45	0.99
42448929--42448977	19	2.6	18	80	9	53	63	0	0	36	0.95
42459259--42459289	16	1.9	16	93	0	53	9	9	6	74	1.23
42459754--42459810	28	2.0	30	93	6	100	21	49	0	29	1.50
42461434--42461531	39	2.5	39	88	3	144	48	30	2	18	1.59
42461593--42461631	11	3.6	11	82	6	53	10	20	0	69	1.17
42461591--42461631	21	2.0	21	95	0	73	9	19	0	70	1.14
42462201--42462260	31	1.9	31	96	0	111	25	23	3	48	1.66
42462645--42462696	18	2.9	18	80	11	54	28	7	25	38	1.83
42469546--42469608	20	3.0	21	81	9	83	41	22	26	9	1.84
42471176--42471230	7	7.9	7	87	0	56	36	30	0	32	1.58
42478180--42478216	2	19.0	2	94	5	67	0	48	0	51	1.00
42480652--42480699	19	2.5	18	80	12	51	58	8	2	31	1.39
42481660--42481732	30	2.4	31	81	9	96	50	1	19	28	1.56
42489202--42489236	16	2.3	15	90	5	52	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42489202--42489243	16	2.9	14	86	13	50	42	0	0	57	0.99
42490855--42491072	109	2.0	109	93	0	373	28	35	20	15	1.93
42491757--42491821	15	4.1	15	76	7	58	15	3	7	73	1.18
42491781--42491827	15	3.1	15	87	0	58	21	2	6	70	1.20
42491990--42492023	11	3.2	10	88	12	50	41	2	0	55	1.15
42492063--42492102	21	1.9	21	84	0	53	17	7	0	75	1.03
42496915--42496966	13	4.1	13	79	15	56	69	0	19	11	1.18
42496919--42496961	7	6.3	7	82	12	54	69	0	18	11	1.17
42498254--42499149	44	20.3	44	77	9	693	31	13	23	31	1.93
42498253--42499149	88	10.1	88	82	5	857	31	13	23	31	1.93
42498252--42499149	353	2.5	353	86	3	1207	31	13	23	31	1.93
42498808--42499221	88	4.7	89	82	6	227	32	15	23	28	1.96
42499168--42499259	44	2.1	44	85	0	121	32	19	22	25	1.97
42499652--42499692	22	2.0	20	86	13	57	46	34	4	14	1.66
42501284--42501340	29	2.0	29	83	13	73	50	5	7	36	1.52
42504144--42504180	9	4.1	9	92	0	65	29	10	13	45	1.77
42504703--42504746	20	2.2	20	84	11	56	43	0	0	56	0.99
42506925--42507058	25	5.4	25	83	0	178	36	23	14	25	1.93
42506923--42507058	50	2.7	50	96	0	245	36	24	13	25	1.92
42510101--42510156	20	2.7	21	81	10	62	33	5	7	53	1.51
42510121--42510183	26	2.6	22	75	20	63	30	6	7	55	1.54
42510128--42510215	26	3.3	26	82	3	104	29	5	5	59	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42510186--42510226	16	2.5	17	80	11	50	36	4	2	56	1.34
42510169--42510232	27	2.3	27	81	7	67	34	4	1	59	1.28
42510324--42510391	30	2.3	30	76	16	79	30	5	1	61	1.28
42516066--42516135	10	7.0	10	70	6	52	64	1	1	32	1.11
42516100--42516150	26	2.0	26	84	7	68	68	1	0	29	1.00
42516482--42516555	29	2.5	29	82	4	85	25	13	13	47	1.79
42517390--42517438	6	8.3	6	82	10	57	48	0	0	51	1.00
42517384--42517438	18	3.1	18	77	12	60	49	0	0	50	1.00
42517420--42517468	22	2.3	22	86	6	66	42	0	2	55	1.11
42519908--42520040	39	3.4	39	92	2	214	27	47	13	11	1.77
42520003--42520066	27	2.4	27	89	5	94	26	51	10	10	1.70
42520496--42520524	2	14.5	2	100	0	58	51	0	48	0	1.00
42522276--42522323	24	2.0	24	87	0	69	45	0	18	35	1.50
42525036--42525210	29	6.0	29	80	12	160	15	0	30	53	1.46
42525029--42525211	59	3.1	60	78	10	173	15	0	29	54	1.46
42525646--42525686	14	2.8	15	81	7	57	12	14	12	60	1.58
42526130--42526245	48	2.4	48	85	0	151	27	0	40	31	1.62
42526197--42526346	81	1.9	81	88	5	232	24	1	45	29	1.61
42528736--42529047	158	2.0	157	86	0	435	39	16	12	31	1.86
42530603--42530667	29	2.3	28	76	10	69	50	16	18	13	1.78
42532648--42532682	16	2.2	16	90	10	54	45	11	5	37	1.64
42535097--42535159	5	12.8	5	93	3	110	39	19	0	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42536676--42536756	41	2.0	41	92	0	135	20	27	23	28	1.99
42542669--42542731	25	2.5	25	85	10	76	31	12	14	41	1.83
42555108--42555311	40	5.1	40	78	8	211	25	27	21	25	1.99
42558593--42558664	36	2.0	36	100	0	144	22	27	11	38	1.88
42564412--42564589	27	6.6	27	83	3	196	26	14	29	29	1.95
42564412--42564589	54	3.3	55	84	4	236	26	14	29	29	1.95
42567099--42567371	75	3.6	75	90	3	390	34	26	16	22	1.95
42569337--42569408	26	2.8	26	81	6	76	33	13	6	45	1.71
42570995--42571020	11	2.4	11	100	0	52	50	7	42	0	1.31
42578287--42578705	136	3.1	136	88	2	635	41	7	5	45	1.56
42584737--42584865	65	2.0	63	96	3	240	27	32	11	27	1.92
42588210--42588256	23	2.0	23	87	0	67	23	8	21	46	1.78
42588219--42588270	23	2.3	23	83	6	61	26	5	19	48	1.71
42596101--42596313	38	5.6	38	88	0	255	36	30	18	15	1.91
42603263--42603379	38	3.1	38	89	0	171	39	29	16	14	1.88
42607598--42607632	3	11.7	3	100	0	70	68	0	0	31	0.90
42607676--42607711	14	2.6	14	95	0	63	50	13	13	22	1.77
42609282--42609381	18	5.3	19	85	9	116	40	0	5	55	1.22
42610016--42610082	32	2.1	32	81	10	75	37	7	4	50	1.51
42611462--42611573	9	11.7	9	68	12	62	33	2	0	62	1.15
42611497--42611555	29	2.0	29	83	6	75	42	1	0	55	1.09
42613480--42613509	13	2.2	14	94	5	53	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42613631--42613665	6	6.0	6	93	6	63	17	0	0	82	0.66
42613631--42613665	17	2.0	18	94	5	63	17	0	0	82	0.66
42613739--42613835	30	3.3	29	76	12	81	29	20	4	45	1.70
42613765--42613827	30	2.1	31	84	3	83	34	20	3	41	1.68
42614417--42614481	13	4.9	13	82	14	80	75	0	24	0	0.81
42614417--42614481	25	2.5	26	82	14	80	75	0	24	0	0.81
42614809--42614847	13	3.0	12	85	14	51	79	0	20	0	0.73
42615290--42615337	18	2.6	19	81	18	57	27	14	10	47	1.76
42615398--42615430	15	2.1	16	88	5	50	24	15	12	48	1.78
42615412--42615450	19	2.1	19	90	4	62	35	12	10	41	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207