genome.fa.s19.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  167  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51590235--51590336	10	10.3	10	70	12	50	62	0	1	34	1.13
51590618--51590654	19	1.9	19	94	0	65	32	0	0	67	0.91
51594965--51595026	26	2.2	27	80	16	72	37	1	0	61	1.06
51595142--51595171	14	2.1	15	93	6	53	46	0	6	46	1.29
51595258--51595495	84	2.8	83	85	2	323	31	11	10	46	1.75
51602254--51602367	43	2.7	43	82	4	124	35	26	14	24	1.93
51633721--51634062	27	12.7	27	81	3	341	40	21	17	20	1.91
51633721--51634062	80	4.2	81	82	5	399	40	21	17	20	1.91
51637175--51637348	50	3.5	48	73	7	152	21	18	22	37	1.94
51637172--51638098	100	9.3	100	90	0	1363	23	20	22	33	1.97
51640319--51640357	20	1.9	21	89	5	62	0	17	0	82	0.68
51640362--51640396	15	2.4	14	95	4	61	11	0	8	80	0.92
51646649--51646741	27	3.4	27	83	0	114	46	19	15	19	1.84
51646695--51646777	27	3.1	26	80	13	71	34	19	19	26	1.95
51646918--51646972	26	2.1	26	93	0	92	23	21	20	34	1.97
51654061--51654419	27	13.3	27	86	2	429	43	20	16	19	1.88
51662388--51662432	20	2.1	21	88	12	65	37	2	0	60	1.09
51662423--51662469	24	2.0	22	84	8	58	40	0	0	59	0.97
51662513--51662574	31	2.0	31	90	3	99	30	0	4	64	1.14
51662655--51662721	29	2.3	28	82	14	75	40	1	1	56	1.17
51662668--51662701	17	2.1	17	94	5	61	41	0	0	58	0.98
51662659--51662746	32	2.9	29	78	18	83	42	1	1	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51672234--51672264	15	2.1	15	100	0	62	35	19	0	45	1.51
51674504--51674530	11	2.5	11	100	0	54	22	7	18	51	1.70
51675927--51676121	93	2.1	92	88	4	286	44	4	4	47	1.41
51676154--51676187	17	2.0	17	94	0	59	44	5	0	50	1.26
51676154--51676192	17	2.4	16	87	8	53	43	5	0	51	1.24
51676158--51676197	17	2.3	18	83	12	57	47	5	0	47	1.24
51676276--51676410	15	8.9	15	67	24	70	42	2	3	51	1.32
51676153--51676370	119	1.8	118	89	6	343	40	3	5	50	1.45
51676378--51676419	15	2.7	16	82	14	52	45	0	2	52	1.13
51676369--51676666	154	1.9	156	95	2	546	47	5	3	44	1.41
51676519--51676553	18	2.0	17	88	5	52	45	0	0	54	0.99
51676799--51676855	16	3.6	16	95	0	87	33	36	0	29	1.58
51677257--51677290	15	2.3	15	94	0	59	61	2	0	35	1.11
51677267--51677332	20	3.1	22	81	16	86	62	4	0	33	1.16
51677266--51677346	41	2.0	40	85	7	110	62	4	0	32	1.16
51677387--51677460	21	3.4	21	75	10	76	56	4	0	39	1.18
51677455--51677500	12	3.8	12	80	11	58	73	6	0	19	1.04
51693944--51694058	11	11.4	11	75	18	67	60	0	3	35	1.13
51693953--51694036	9	9.0	9	74	18	66	64	0	1	34	1.02
51693975--51694088	47	2.4	46	87	7	158	64	0	2	32	1.07
51693973--51694083	48	2.3	49	87	6	165	66	0	2	30	1.05
51696002--51696056	23	2.4	22	73	8	56	45	16	3	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51698724--51698776	21	2.5	22	84	9	65	56	1	1	39	1.21
51721575--51721697	42	2.9	43	80	4	142	43	17	20	18	1.88
51723794--51723826	16	2.1	15	94	5	57	60	0	0	39	0.97
51724007--51724052	18	2.6	17	82	6	56	32	0	2	65	1.05
51725124--51725174	25	2.0	25	84	0	66	37	31	19	11	1.88
51725084--51725217	68	2.0	68	82	5	164	33	28	18	19	1.96
51725149--51725250	43	2.4	43	88	3	143	34	27	14	23	1.94
51726891--51726953	26	2.4	26	77	15	67	36	15	22	25	1.94
51734657--51734731	26	2.9	26	84	5	91	40	22	17	20	1.92
51741929--51742053	66	1.9	66	88	3	189	16	23	16	43	1.88
51741928--51742076	66	2.3	66	83	2	174	16	23	17	42	1.88
51747513--51747749	9	27.9	9	69	13	146	33	2	19	44	1.65
51747513--51747749	16	13.9	18	67	15	146	33	2	19	44	1.65
51747569--51747764	102	1.9	100	92	2	329	33	2	18	45	1.63
51747526--51747693	25	7.0	25	75	9	161	33	1	18	46	1.57
51747684--51747749	25	2.6	25	78	0	78	31	4	22	40	1.74
51747516--51747747	50	4.6	50	76	10	229	32	2	20	44	1.65
51747733--51747775	20	2.2	20	86	0	59	51	0	9	39	1.34
51747747--51747792	20	2.4	19	85	3	56	50	0	2	47	1.13
51747808--51747852	23	2.0	22	86	4	63	46	0	6	46	1.29
51747801--51747861	30	2.0	30	84	6	79	47	0	6	45	1.28
51749188--51749234	21	2.2	22	92	3	78	46	14	14	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51749929--51750140	102	2.1	102	85	3	282	26	13	12	48	1.77
51750073--51750109	18	2.0	20	89	10	60	27	0	0	72	0.84
51750073--51750109	19	2.0	18	89	5	56	27	0	0	72	0.84
51749729--51750217	253	1.9	255	91	2	795	25	15	13	45	1.83
51750644--51750686	22	2.0	22	90	0	68	37	41	2	18	1.63
51750651--51750692	22	1.9	22	90	0	66	33	47	2	16	1.60
51750667--51750695	15	1.9	15	100	0	58	34	51	0	13	1.42
51750648--51750696	22	2.3	21	79	6	62	36	44	2	16	1.59
51750715--51750756	14	2.9	14	86	6	57	33	40	2	23	1.68
51750957--51750991	14	2.5	14	90	0	52	34	42	2	20	1.66
51750932--51751026	22	4.4	23	76	12	78	34	38	1	25	1.63
51751025--51751051	14	1.9	14	100	0	54	37	37	0	25	1.57
51750528--51751137	310	2.0	304	87	7	885	41	28	2	27	1.70
51751161--51751590	114	3.8	115	78	6	482	28	26	21	24	1.99
51751161--51751583	229	1.9	228	83	4	557	28	26	21	24	1.99
51751822--51751877	27	2.1	26	87	9	78	48	0	41	10	1.38
51752054--51752485	115	3.8	113	78	10	364	34	24	15	25	1.94
51752580--51752919	171	2.0	171	100	0	680	35	9	7	47	1.64
51753173--51753403	7	32.4	7	67	13	51	44	30	2	22	1.65
51753188--51753403	14	14.7	14	68	15	89	44	30	2	22	1.65
51753227--51753386	65	2.5	65	89	3	243	43	30	2	23	1.67
51753255--51753365	22	5.1	22	68	14	79	43	30	2	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51756485--51756533	20	2.5	19	81	15	55	4	16	2	77	1.01
51768811--51768847	9	4.1	9	92	0	65	29	10	13	45	1.77
51768901--51768931	9	3.4	9	90	0	53	38	22	12	25	1.90
51774560--51774626	30	2.2	30	84	5	82	25	19	16	38	1.92
51775478--51775545	30	2.3	30	86	0	91	36	14	23	25	1.93
51780113--51780277	76	2.2	76	89	0	258	27	20	23	29	1.98
51780536--51780577	15	2.6	16	82	17	52	38	4	16	40	1.70
51782809--51782838	9	3.3	9	95	0	51	53	0	16	30	1.44
51788538--51788591	27	2.0	27	92	0	90	48	7	0	44	1.31
51792171--51792326	43	3.7	43	76	10	149	30	14	27	26	1.95
51797400--51797435	12	2.9	12	91	4	54	16	27	0	55	1.42
51797400--51797435	18	1.9	19	88	5	56	16	27	0	55	1.42
51808977--51809351	188	2.0	188	93	0	633	33	16	19	30	1.94
51812229--51812276	18	2.7	18	80	0	60	43	6	31	18	1.75
51812728--51812764	17	2.2	17	90	0	56	21	18	5	54	1.64
51816547--51816645	47	2.1	48	88	1	146	18	21	22	38	1.93
51817481--51817654	94	1.9	94	86	2	251	33	21	11	33	1.89
51817565--51817835	130	2.1	130	83	1	346	32	19	12	35	1.90
51818758--51818804	21	2.2	20	79	17	51	23	17	4	55	1.59
51819783--51819846	20	3.2	20	69	8	58	42	15	17	25	1.88
51839365--51839418	22	2.4	23	84	12	76	25	29	1	42	1.66
51839363--51839418	11	4.9	12	73	18	57	25	30	1	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51841281--51841315	18	1.9	18	88	0	52	20	28	8	42	1.81
51841887--51842336	22	21.0	21	81	5	456	47	26	1	25	1.59
51841895--51842336	43	10.3	43	82	7	499	47	26	1	25	1.59
51842284--51842338	21	2.3	26	67	29	66	49	25	0	25	1.51
51844298--51844337	18	2.2	18	95	0	71	55	25	0	20	1.44
51844298--51844337	9	4.4	9	84	12	55	55	25	0	20	1.44
51844392--51844470	40	2.0	40	84	0	104	27	29	21	21	1.99
51856785--51856814	15	1.9	16	93	6	53	33	0	23	43	1.54
51856813--51856859	23	2.0	23	91	0	76	36	12	12	38	1.82
51857123--51857213	25	3.6	24	80	5	76	24	19	24	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207