genome.fa.s19.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  101  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30111945--30112120	27	6.6	27	82	3	203	27	14	28	29	1.95
30114134--30114204	6	11.7	6	79	11	56	76	4	0	19	0.96
30114125--30114168	20	2.3	19	80	4	52	79	4	2	13	0.98
30114127--30114213	12	7.4	11	75	14	59	75	4	1	18	1.03
30114940--30115013	37	2.0	37	100	0	148	64	10	8	16	1.47
30115100--30115169	4	17.0	4	74	21	56	70	0	5	24	1.09
30115100--30115169	9	8.5	8	74	17	56	70	0	5	24	1.09
30115103--30115163	26	2.3	27	81	13	74	70	0	6	22	1.10
30115112--30115179	22	3.2	21	78	18	70	69	0	8	22	1.16
30115117--30115169	19	2.7	19	85	11	63	71	0	3	24	1.02
30120095--30120144	10	4.9	10	80	20	50	30	4	6	60	1.39
30133752--30133793	11	3.8	11	80	0	57	30	0	38	30	1.58
30133753--30133805	22	2.4	22	90	0	88	35	0	35	28	1.58
30133753--30133800	11	4.4	11	78	0	51	35	0	35	29	1.58
30138959--30139055	27	3.6	27	77	10	92	21	17	20	40	1.92
30140064--30140096	7	4.7	7	96	0	57	54	0	45	0	0.99
30142122--30142229	21	5.1	21	73	12	87	40	17	20	21	1.91
30142118--30142229	42	2.7	42	82	8	138	41	16	19	21	1.90
30155422--30155508	27	3.2	27	87	8	106	26	16	16	41	1.88
30157004--30157057	25	2.2	25	89	0	81	22	46	9	22	1.80
30165373--30165552	51	3.6	50	81	3	218	24	18	27	29	1.98
30169225--30169291	33	2.0	35	82	8	86	49	0	2	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30173674--30173737	32	2.0	32	100	0	128	34	3	12	50	1.56
30176369--30176605	50	4.8	49	83	2	289	21	32	18	26	1.97
30176626--30176717	43	2.1	44	91	2	150	25	19	11	43	1.85
30178206--30178292	45	2.0	43	81	4	102	45	6	4	42	1.51
30180249--30180281	4	8.5	4	93	6	59	24	0	0	75	0.80
30184020--30184142	42	3.0	40	80	8	138	30	25	20	23	1.98
30186617--30186642	9	2.9	9	100	0	52	34	11	19	34	1.88
30192164--30192207	24	1.9	23	81	9	54	61	9	11	18	1.55
30199778--30199901	62	2.0	62	98	0	239	25	16	9	48	1.77
30213718--30213886	83	2.0	83	88	2	250	42	23	18	15	1.88
30215200--30215232	15	2.2	15	100	0	66	18	18	9	54	1.69
30215171--30215257	40	2.2	40	97	0	165	21	16	12	49	1.78
30215215--30215268	25	2.2	25	96	0	99	22	12	16	48	1.80
30219493--30219683	51	3.8	51	84	5	228	24	16	27	30	1.97
30225134--30225307	27	6.4	27	82	4	188	28	14	27	29	1.95
30225131--30225282	82	1.9	81	86	4	216	28	15	26	29	1.96
30232928--30233112	51	3.7	50	77	6	178	22	18	28	29	1.98
30233140--30233267	33	3.6	33	76	17	148	17	17	28	35	1.94
30233135--30233347	75	2.8	76	89	0	320	21	18	27	32	1.97
30254833--30254889	26	2.2	26	83	3	69	31	24	12	31	1.92
30254833--30254933	27	3.8	27	80	2	105	29	20	10	38	1.87
30256550--30256768	109	2.0	109	97	0	411	47	7	19	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30262609--30262656	17	2.8	17	90	6	71	56	14	6	22	1.61
30264845--30264967	28	4.4	28	88	2	167	33	27	12	26	1.92
30273135--30273256	28	4.4	28	88	4	167	33	27	12	26	1.92
30273134--30273256	54	2.2	57	85	4	171	33	28	12	26	1.92
30277673--30277797	28	4.4	28	85	6	153	27	12	27	33	1.92
30277673--30277797	57	2.2	57	86	2	171	27	12	27	33	1.92
30277698--30277810	27	4.0	27	82	7	84	30	11	24	33	1.91
30286688--30286863	27	6.6	27	83	5	196	30	27	15	26	1.96
30286707--30286862	82	1.9	81	88	3	233	29	28	15	26	1.96
30294868--30295045	27	6.6	27	84	3	205	29	28	15	26	1.96
30294889--30295044	82	1.9	81	88	3	233	29	28	15	26	1.96
30298964--30299011	25	1.9	25	83	8	62	20	8	4	66	1.35
30303428--30303493	23	3.0	23	80	4	73	51	0	6	42	1.26
30303679--30303708	15	2.1	15	93	6	53	33	0	0	66	0.92
30306754--30306806	26	2.0	26	85	0	70	18	18	32	30	1.96
30306713--30306843	67	1.9	68	82	10	162	24	17	27	30	1.97
30306783--30306933	42	3.6	43	76	7	148	22	17	25	34	1.96
30320588--30320638	23	2.3	21	83	12	59	47	0	7	45	1.32
30321039--30321080	7	5.7	7	83	10	57	14	52	0	33	1.42
30321039--30321084	16	3.1	15	87	9	67	13	52	0	34	1.40
30325627--30325652	6	4.3	6	100	0	52	84	0	0	15	0.62
30353439--30353496	30	1.9	30	89	0	89	15	24	27	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30353526--30353607	35	2.3	36	76	4	85	26	17	30	25	1.97
30360174--30360206	16	2.1	16	88	11	50	60	0	3	36	1.12
30366397--30366432	19	2.0	18	89	10	56	16	38	0	44	1.48
30375546--30375573	4	7.0	4	100	0	56	25	0	0	75	0.81
30377929--30377966	17	2.2	18	85	4	51	63	2	23	10	1.39
30377948--30378002	12	4.6	12	73	15	51	63	0	23	12	1.29
30381353--30381418	20	3.2	20	67	12	60	25	4	10	59	1.50
30381462--30381496	16	2.2	16	100	0	70	28	14	5	51	1.65
30389614--30389656	22	2.0	22	90	9	70	62	2	0	34	1.08
30390092--30390133	16	2.6	16	80	0	57	50	0	0	50	1.00
30396698--30396751	24	2.2	24	93	0	90	31	22	29	16	1.96
30412975--30413321	50	6.8	50	82	3	347	28	19	29	23	1.98
30412973--30413322	150	2.3	152	80	7	386	28	19	28	23	1.98
30426694--30426761	13	5.8	12	73	23	56	7	19	1	72	1.16
30426719--30426784	20	3.4	19	78	12	64	4	18	1	75	1.04
30426675--30426766	22	4.2	20	77	18	78	7	17	2	72	1.17
30430996--30431053	30	1.9	31	86	6	84	31	6	12	50	1.66
30431319--30431348	12	2.5	12	94	0	51	16	43	10	30	1.81
30438649--30438681	16	2.1	16	100	0	66	39	24	6	30	1.79
30445748--30445793	24	1.9	24	86	8	67	17	4	2	76	1.06
30448966--30448998	7	4.9	7	96	3	59	39	0	0	60	0.97
30454106--30454143	17	2.2	18	86	13	53	15	0	10	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30454725--30454761	18	2.0	19	89	5	58	37	0	8	54	1.30
30466636--30466712	21	3.7	21	79	5	84	50	10	6	32	1.62
30466636--30466693	21	2.7	22	83	5	91	53	8	3	34	1.49
30468857--30468895	20	2.0	20	84	0	51	46	12	7	33	1.71
30469340--30469394	27	2.0	27	96	0	101	34	32	12	20	1.90
30470213--30470348	64	2.1	64	98	0	263	45	5	15	33	1.68
30474082--30474137	12	4.7	12	74	14	53	64	0	23	12	1.27
30479407--30479462	25	2.3	25	87	6	89	44	0	0	55	0.99
30484875--30484932	28	2.1	28	83	6	73	43	10	13	32	1.78
30489217--30489500	141	2.0	141	96	0	523	43	13	13	29	1.81
30489509--30489568	28	2.1	28	81	6	68	45	8	13	33	1.73
30496315--30496367	25	2.1	25	96	0	97	30	16	11	41	1.84
30497283--30497325	20	2.2	20	83	8	52	20	2	23	53	1.57
30511724--30511821	38	2.5	40	85	6	130	51	10	2	36	1.48
30517860--30517938	38	2.0	40	85	4	108	45	10	10	34	1.72
30529609--30529656	23	2.0	24	92	4	80	29	16	12	41	1.85
30529616--30529662	12	4.0	12	75	5	51	31	14	10	42	1.80
30537141--30537195	27	2.0	27	85	0	74	27	25	3	43	1.71
30537151--30537208	27	2.1	27	93	0	98	24	24	6	44	1.77
30542793--30542853	7	8.6	7	80	3	68	16	0	34	49	1.46
30543465--30543502	6	6.3	6	87	0	58	18	0	42	39	1.50
30543322--30543896	232	2.4	234	89	7	840	34	2	19	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30545729--30545771	18	2.4	18	88	0	59	44	9	27	18	1.80
30547592--30547681	11	8.6	10	69	21	60	46	1	30	22	1.59
30547579--30547678	51	2.0	51	90	4	157	46	1	29	24	1.59
30549006--30549050	22	2.0	22	100	0	90	40	13	42	4	1.64
30553155--30553219	32	2.1	32	97	2	123	47	12	9	30	1.72
30554212--30554239	13	2.2	13	100	0	56	57	7	21	14	1.61
30556328--30556749	107	4.0	107	86	4	579	31	17	18	33	1.94
30556332--30556746	212	2.0	212	88	3	620	30	17	18	33	1.94
30568378--30568629	44	5.8	44	73	10	176	29	19	21	28	1.98
30568641--30568803	84	1.9	85	81	7	195	30	22	22	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207