genome.fa.s19.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  170  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52547645--52547943	87	3.4	87	75	8	223	41	11	12	35	1.79
52547876--52548015	73	1.9	73	85	2	192	47	10	11	30	1.74
52551024--52551076	21	2.5	21	93	0	88	30	7	32	30	1.85
52558547--52558592	21	2.2	22	88	7	69	39	10	30	19	1.86
52560420--52560460	20	2.0	21	85	4	57	41	9	7	41	1.66
52568305--52568366	14	4.4	14	75	20	58	74	1	3	20	1.05
52568317--52568366	7	7.0	7	80	17	50	72	2	2	24	1.06
52575210--52575270	13	4.7	13	81	0	68	39	8	14	37	1.76
52575227--52575290	13	4.9	13	76	0	56	37	7	18	35	1.80
52575227--52575288	26	2.4	26	77	0	70	38	8	17	35	1.80
52575766--52575796	13	2.4	13	94	0	53	38	6	19	35	1.77
52576881--52576942	31	2.0	31	90	3	99	17	14	27	40	1.89
52581423--52581484	31	2.0	31	90	3	99	17	14	27	40	1.89
52593478--52593566	40	2.3	39	88	5	126	38	2	5	53	1.37
52596621--52596660	20	2.0	21	85	9	57	25	20	5	50	1.68
52600611--52600674	19	3.3	19	85	8	92	39	7	14	39	1.74
52600612--52600687	21	3.7	21	89	3	111	40	9	11	38	1.74
52600643--52600710	21	3.0	24	85	8	90	39	8	14	36	1.78
52600678--52600720	22	1.9	23	85	4	61	34	9	13	41	1.77
52600887--52600925	19	2.0	21	85	10	55	15	10	5	69	1.34
52605431--52605464	15	2.3	15	94	0	59	79	0	20	0	0.73
52605426--52605463	19	2.0	20	89	5	60	81	0	18	0	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52606685--52607266	131	4.5	132	89	3	885	30	20	23	24	1.99
52607250--52607710	44	10.7	44	71	12	163	28	21	22	27	1.99
52607242--52607723	217	2.2	217	89	1	718	28	20	23	27	1.99
52608023--52608086	19	3.3	19	89	8	101	39	9	14	37	1.78
52608024--52608088	21	3.2	21	93	4	107	40	9	12	38	1.75
52608024--52608099	21	3.7	21	89	3	84	40	9	11	38	1.74
52612305--52612387	41	2.0	41	92	0	139	33	28	4	32	1.78
52623321--52623358	14	2.8	14	88	4	51	34	28	7	28	1.85
52623424--52623465	7	6.1	7	80	2	50	38	14	14	33	1.86
52623425--52623464	14	2.9	14	88	3	64	40	15	10	35	1.80
52623764--52623809	23	2.0	23	91	0	74	32	2	19	45	1.62
52627857--52627888	3	10.7	3	100	0	64	65	0	0	34	0.93
52636550--52636603	27	1.9	29	85	7	76	55	14	9	20	1.66
52641644--52641690	16	2.9	16	84	6	51	48	2	2	46	1.25
52642231--52642280	17	2.7	20	78	18	70	10	0	44	46	1.37
52646861--52646910	17	2.7	20	78	18	70	10	0	44	46	1.37
52647769--52647823	27	2.1	26	96	3	101	25	18	27	29	1.98
52649873--52649967	20	4.8	19	71	12	75	11	34	20	33	1.88
52652636--52652831	57	3.4	56	77	8	182	37	19	14	28	1.91
52652643--52652802	29	5.6	28	77	7	135	36	19	15	28	1.92
52657231--52657295	32	2.1	32	94	2	114	47	10	9	32	1.70
52660597--52660626	10	3.0	10	95	0	51	60	16	10	13	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52660878--52660928	9	5.2	9	81	13	57	1	5	11	80	0.97
52661468--52661532	32	2.1	32	97	2	123	47	12	9	30	1.72
52671319--52671380	26	2.4	26	86	5	81	40	11	12	35	1.80
52684700--52684738	16	2.4	17	83	12	55	56	0	5	38	1.22
52684704--52684744	16	2.7	15	88	7	57	56	0	2	41	1.13
52705089--52705130	12	3.5	12	75	12	50	33	0	42	23	1.55
52705089--52705135	24	1.9	24	91	4	76	34	0	38	27	1.57
52705261--52705377	55	2.1	55	91	0	189	29	11	33	26	1.91
52705805--52705996	27	7.1	27	78	5	151	39	19	20	20	1.93
52705810--52705992	54	3.4	54	81	7	174	39	18	20	21	1.92
52705850--52706156	27	11.5	27	77	10	215	34	19	22	23	1.96
52706200--52706258	24	2.5	24	83	5	75	22	6	23	47	1.75
52706429--52706706	32	8.7	32	78	6	260	19	19	22	38	1.94
52706426--52706712	64	4.5	64	82	5	339	19	19	22	37	1.94
52706944--52706997	28	1.9	28	85	7	74	20	24	24	31	1.98
52719770--52719795	3	8.7	3	100	0	52	34	0	0	65	0.93
52720888--52721078	49	3.9	49	80	9	167	26	31	16	25	1.97
52725690--52725729	20	2.0	20	85	0	53	42	15	22	20	1.88
52737029--52737075	16	2.8	17	87	12	62	70	2	4	23	1.16
52743710--52743822	51	2.2	51	96	0	208	31	7	30	30	1.86
52744010--52744100	33	2.8	33	79	0	101	43	15	25	15	1.85
52747421--52747457	19	1.9	19	89	10	58	37	2	8	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52760936--52760960	13	1.9	13	100	0	50	24	24	36	16	1.94
52779497--52779553	7	8.1	7	90	0	69	21	0	49	29	1.50
52779515--52779558	14	3.1	14	90	3	61	22	0	45	31	1.53
52779955--52780125	56	3.0	58	88	5	267	29	6	9	54	1.58
52783731--52783820	43	2.1	44	87	2	128	45	13	12	28	1.79
52783802--52783849	25	1.9	25	83	8	62	47	4	25	22	1.69
52788760--52788814	26	2.1	26	93	0	92	21	12	40	25	1.89
52791032--52791132	43	2.3	43	74	12	100	31	29	14	23	1.95
52794652--52794683	16	1.9	17	93	6	57	12	18	40	28	1.87
52794665--52794746	30	3.1	30	64	32	85	18	17	29	35	1.93
52799341--52799401	31	1.9	32	87	9	90	42	18	1	37	1.60
52800979--52801003	11	2.3	11	100	0	50	32	24	8	36	1.84
52802390--52802535	57	2.5	57	82	10	172	22	13	13	51	1.74
52802390--52802535	58	2.5	58	81	13	176	22	13	13	51	1.74
52802651--52802698	25	1.9	25	83	8	62	45	4	10	39	1.58
52803192--52803567	136	2.8	136	85	2	506	25	22	18	33	1.97
52803870--52804010	37	3.8	37	82	7	142	28	7	22	41	1.80
52803929--52804007	39	2.0	39	100	0	158	25	7	22	44	1.79
52805152--52805177	3	8.7	3	100	0	52	69	0	0	30	0.89
52814627--52814683	29	2.0	29	96	0	105	24	15	5	54	1.62
52820899--52820927	14	2.0	15	93	6	51	20	6	6	65	1.40
52821867--52821916	26	1.9	26	84	8	66	58	2	0	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52826121--52826172	24	2.2	24	89	0	77	50	9	3	36	1.54
52831844--52831883	15	2.9	14	85	10	55	67	0	2	30	1.04
52832346--52832387	19	2.2	19	87	8	59	69	2	0	28	1.01
52832355--52832387	9	3.7	9	88	11	50	69	0	0	30	0.88
52834847--52835044	99	2.0	99	97	0	378	39	17	12	30	1.86
52834978--52835121	78	1.8	78	86	2	209	39	15	12	31	1.85
52836495--52836532	19	2.1	18	85	9	51	42	7	2	47	1.46
52840938--52841021	42	2.0	42	100	0	168	42	9	21	26	1.83
52840939--52841008	21	3.2	24	62	29	64	44	8	20	27	1.80
52843189--52843227	18	2.3	18	86	8	55	43	12	5	38	1.65
52843384--52843414	15	2.1	15	93	0	53	25	32	6	35	1.82
52846775--52846804	15	2.0	15	93	0	51	23	46	6	23	1.75
52847549--52847587	18	2.3	18	86	8	55	43	12	5	38	1.65
52847744--52847774	15	2.1	15	93	0	53	25	32	6	35	1.82
52848552--52848604	26	2.1	26	86	10	74	26	7	7	58	1.52
52849603--52849642	21	2.0	21	85	5	55	42	2	2	52	1.28
52849686--52849731	24	1.9	24	82	8	58	47	10	19	21	1.80
52850754--52850879	62	2.0	62	100	0	252	41	4	20	33	1.73
52856227--52856274	24	2.0	24	91	0	78	41	14	31	12	1.83
52856818--52856874	21	2.6	22	75	13	55	33	1	17	47	1.58
52857037--52857181	54	2.7	54	81	2	166	27	23	24	24	2.00
52857153--52857235	42	2.0	42	88	4	123	26	21	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52857357--52858036	358	1.9	358	90	1	1094	28	13	19	39	1.89
52862760--52863125	102	3.6	102	95	1	619	30	29	20	19	1.97
52862996--52863047	26	2.0	26	96	0	95	28	34	23	13	1.92
52863452--52863515	30	2.2	29	81	10	76	29	28	6	35	1.82
52863459--52863515	30	1.9	30	85	3	80	29	24	7	38	1.82
52865099--52865146	21	2.2	22	81	7	53	14	12	0	72	1.11
52865173--52865214	17	2.6	15	88	11	57	23	2	2	71	1.10
52865168--52865246	26	3.0	26	78	7	70	18	2	3	74	1.08
52865175--52865254	21	3.7	20	75	20	65	17	2	3	76	1.05
52865196--52865304	32	3.5	30	78	5	101	10	5	6	77	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207