genome.fa.s19.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  179  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54990605--54990653	7	6.9	7	82	13	64	28	0	30	40	1.57
54990600--54990645	15	3.1	15	90	6	76	26	0	30	43	1.55
54990601--54990653	14	3.7	14	89	2	79	28	0	30	41	1.56
54990655--54990705	15	3.5	15	79	12	61	19	0	47	33	1.50
54990885--54990926	15	2.9	15	85	3	59	33	0	28	38	1.58
54990956--54990990	14	2.5	14	90	9	54	22	0	45	31	1.53
54992072--54992352	152	1.9	148	88	4	359	48	12	11	26	1.76
54992209--54992482	108	2.5	109	88	7	394	48	12	10	28	1.74
54992391--54992578	96	1.9	97	91	3	308	45	13	12	28	1.80
54994408--54994592	95	2.0	94	87	1	271	14	24	16	45	1.84
54995979--54996184	43	4.8	43	84	1	272	23	19	30	26	1.98
54995979--54996184	85	2.4	85	85	3	279	23	19	30	26	1.98
54998043--54998150	42	2.6	42	89	0	162	25	23	18	32	1.97
54998145--54998260	43	2.7	43	79	4	126	27	23	18	31	1.97
54998103--54998260	86	1.8	86	83	2	210	27	22	17	31	1.97
54998629--54998679	21	2.4	21	90	0	75	1	45	19	33	1.62
55003006--55003089	9	9.8	9	80	14	88	32	3	21	42	1.70
55002999--55003080	25	3.3	25	79	14	89	32	3	19	43	1.68
55006047--55006101	21	2.7	20	77	5	56	38	36	3	21	1.71
55006453--55006880	133	3.2	134	80	8	478	30	21	15	32	1.94
55011923--55012056	69	1.9	69	100	0	268	37	8	16	38	1.79
55013439--55013481	12	3.5	12	84	15	52	65	0	2	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55027183--55027231	23	2.1	23	88	0	71	46	12	4	36	1.60
55033655--55033693	21	1.9	20	94	5	69	28	15	10	46	1.78
55040939--55040978	20	2.0	20	85	0	53	45	2	10	42	1.51
55042507--55042561	27	2.0	27	92	0	92	30	10	18	40	1.85
55044064--55044127	24	2.6	25	80	9	69	51	4	3	40	1.38
55046342--55046478	50	2.7	51	76	14	156	40	2	32	24	1.67
55047406--55047500	9	10.5	8	83	10	64	27	10	22	40	1.86
55047428--55047500	27	2.7	26	83	10	85	27	10	23	38	1.88
55047428--55047500	18	4.1	18	85	1	94	27	10	23	38	1.88
55048302--55048371	28	2.5	28	92	0	113	40	8	15	35	1.78
55052855--55052889	18	2.0	18	94	5	63	85	8	0	5	0.73
55053031--55053130	14	7.1	14	71	18	57	62	0	38	0	0.96
55053047--55053224	38	4.8	38	79	13	169	67	0	32	0	0.95
55053056--55053223	34	4.9	32	75	20	103	67	0	32	0	0.96
55053906--55053956	18	2.8	18	87	3	66	25	0	7	66	1.18
55053992--55054222	28	8.7	27	79	12	230	40	8	2	48	1.45
55053992--55054222	53	4.4	53	89	6	330	40	8	2	48	1.45
55057473--55057506	16	2.2	15	89	5	50	5	2	2	88	0.70
55057509--55057565	28	2.0	29	96	3	107	50	0	7	42	1.29
55057512--55057577	28	2.4	28	89	5	98	46	1	10	40	1.47
55067243--55067290	22	2.1	23	92	3	80	22	12	35	29	1.91
55081203--55081248	14	3.3	14	78	0	56	23	0	34	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55082410--55082442	11	3.1	11	82	8	50	9	6	3	81	0.95
55083213--55083259	3	15.7	3	95	0	67	34	6	0	59	1.23
55096162--55096317	44	3.6	43	78	6	154	29	21	23	26	1.99
55096168--55096329	87	1.9	87	84	2	218	29	20	24	25	1.99
55095904--55096368	211	2.2	214	86	5	645	29	20	23	26	1.99
55097258--55097290	11	3.1	11	82	8	50	9	6	3	81	0.95
55098063--55098115	3	17.7	3	96	0	70	33	7	0	58	1.26
55101493--55101537	18	2.5	18	96	0	81	48	11	0	40	1.39
55101497--55101537	9	4.6	9	81	0	55	46	12	0	41	1.41
55101636--55101705	28	2.7	27	80	19	85	54	17	0	28	1.43
55101703--55101762	9	6.7	9	82	0	75	46	15	1	36	1.55
55101685--55101758	18	3.9	18	83	7	85	48	14	1	35	1.53
55101703--55101762	27	2.2	27	90	0	93	46	15	1	36	1.55
55101710--55101764	18	3.1	18	91	0	83	49	12	0	38	1.41
55101786--55101819	17	1.9	18	88	5	52	38	5	0	55	1.24
55101493--55101916	231	1.8	229	94	3	762	45	13	0	40	1.48
55101882--55102138	9	28.3	9	76	11	224	46	17	1	35	1.56
55101493--55101971	231	2.1	226	88	5	705	45	13	0	39	1.48
55103081--55103146	21	3.1	21	86	4	89	36	21	40	1	1.62
55103110--55103158	12	4.3	12	75	15	59	40	20	38	0	1.53
55103584--55103667	43	2.0	43	88	4	125	30	17	23	27	1.97
55103637--55103760	43	2.9	43	91	3	189	25	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55103802--55103845	22	2.0	22	90	0	70	50	27	13	9	1.72
55105636--55105671	3	12.3	3	88	5	56	63	0	36	0	0.94
55105636--55105675	14	2.9	14	92	7	64	65	0	35	0	0.93
55105864--55105920	19	2.9	19	84	2	69	33	1	14	50	1.52
55105874--55106034	83	2.0	84	81	10	190	33	0	11	54	1.42
55105965--55106025	19	3.1	19	84	13	86	34	0	11	54	1.37
55105984--55106233	49	5.0	50	86	10	288	31	0	12	55	1.40
55105974--55106232	27	10.3	25	78	18	256	32	0	11	54	1.40
55106098--55106155	22	2.9	19	71	14	53	34	1	12	51	1.49
55106139--55106206	8	8.4	8	69	15	50	33	0	13	52	1.40
55106224--55106342	60	2.0	60	83	3	150	31	1	14	52	1.51
55106376--55106456	37	2.2	38	93	4	146	54	3	2	39	1.32
55106493--55106534	16	2.7	15	85	7	57	38	2	2	57	1.25
55111418--55111493	27	2.8	27	88	4	109	19	36	25	18	1.94
55112311--55112487	90	2.0	90	86	2	248	24	12	21	41	1.88
55121002--55121362	104	3.5	104	89	3	530	32	27	20	18	1.96
55121196--55121283	27	3.0	27	81	15	95	30	27	23	18	1.97
55128674--55128756	33	2.5	33	94	0	139	39	26	16	16	1.90
55128575--55128836	111	2.5	104	84	8	357	35	27	19	17	1.95
55130726--55130791	34	1.9	34	82	11	82	37	4	1	56	1.29
55131585--55131678	45	2.1	45	94	2	163	28	8	29	32	1.87
55135021--55135112	42	2.2	42	84	0	112	26	23	30	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55141238--55141298	26	2.6	21	73	26	52	59	3	8	29	1.43
55142686--55143138	131	3.5	131	91	0	672	24	24	20	30	1.99
55156371--55156403	14	2.4	14	100	0	66	15	6	15	63	1.49
55158587--55158621	17	2.1	17	89	10	54	45	22	0	31	1.53
55159433--55159494	3	20.7	3	96	0	115	30	1	0	67	1.00
55159877--55159914	4	9.5	4	94	0	58	44	23	5	26	1.74
55160690--55160725	3	12.0	3	100	0	72	33	0	0	66	0.92
55163239--55163286	4	12.0	4	95	0	87	25	22	0	52	1.48
55165674--55165698	13	1.9	13	100	0	50	64	16	0	20	1.30
55168767--55168819	21	2.5	21	77	14	54	52	3	1	41	1.30
55173673--55173697	9	2.8	9	100	0	50	12	0	0	88	0.53
55175207--55175330	56	2.2	55	87	4	176	32	12	25	30	1.92
55175208--55175309	28	3.6	28	95	0	177	31	12	25	30	1.93
55176030--55176328	23	12.9	23	74	11	218	27	15	17	39	1.89
55176032--55176350	93	3.4	93	91	1	487	27	15	17	38	1.90
55183744--55183819	9	8.7	9	78	8	68	32	0	15	51	1.44
55186146--55186189	22	2.0	22	82	8	54	59	11	2	27	1.44
55187755--55188149	41	9.7	41	88	2	562	15	20	31	33	1.93
55188498--55188554	22	2.6	23	81	10	57	24	1	29	43	1.64
55188570--55188655	21	4.1	21	71	16	72	26	1	33	38	1.64
55188643--55188682	21	1.9	21	94	0	71	20	0	50	30	1.49
55188618--55188669	14	3.7	14	82	5	61	21	0	44	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55195535--55195784	43	5.8	43	80	3	173	22	18	30	28	1.97
55195602--55195784	86	2.1	86	82	0	222	22	19	30	27	1.98
55195848--55195889	22	1.9	22	95	0	75	40	28	21	9	1.84
55196734--55196781	25	1.9	25	100	0	96	58	0	8	33	1.28
55196976--55197049	27	2.7	27	87	0	103	28	17	40	13	1.87
55197203--55197339	41	3.4	40	79	3	123	17	21	16	43	1.87
55197230--55197339	41	2.7	41	84	0	139	17	22	17	42	1.89
55197383--55197408	12	2.2	12	100	0	52	53	30	7	7	1.57
55198311--55198627	158	2.0	158	100	0	634	23	13	23	39	1.90
55202328--55202377	26	2.0	26	84	11	68	46	2	0	52	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207