genome.fa.s19.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  41  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11898262--11898328	26	2.6	26	86	6	100	37	23	23	14	1.93
11898368--11898433	25	2.6	25	83	9	73	33	21	27	18	1.96
11898263--11898498	130	1.8	132	80	3	289	33	22	25	18	1.96
11898577--11898627	24	2.1	24	82	7	59	43	11	0	45	1.40
11898775--11898823	5	9.6	5	86	4	71	40	18	0	40	1.50
11903556--11903748	71	2.6	74	89	5	304	30	17	15	36	1.91
11909681--11909725	24	1.9	23	81	4	54	46	0	6	46	1.29
11909952--11910018	16	4.2	16	92	0	89	28	31	2	37	1.72
11914612--11914750	69	2.0	69	100	0	278	31	8	24	35	1.86
11914958--11915018	24	2.5	24	83	0	68	24	27	18	29	1.98
11923045--11923175	54	2.4	54	86	6	176	26	31	0	41	1.56
11935664--11935702	21	2.0	20	85	10	53	23	20	20	35	1.96
11946630--11946674	23	2.0	23	82	8	56	55	2	2	40	1.24
11946760--11946795	19	1.9	18	94	5	63	30	16	25	27	1.97
11947946--11947979	13	2.5	13	90	4	50	2	11	0	85	0.71
11949467--11949502	11	3.1	12	88	8	56	63	5	0	30	1.17
11949531--11949578	21	2.3	20	80	16	53	66	2	6	25	1.26
11960119--11960177	29	2.0	31	83	6	77	30	15	10	44	1.79
11961715--11961752	20	2.0	20	84	5	51	63	0	7	28	1.23
11973747--11973788	16	2.6	16	96	0	75	47	0	7	45	1.30
11973791--11973910	59	2.1	59	88	1	188	41	4	9	45	1.55
11973976--11974019	24	1.9	24	90	9	74	61	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11981187--11981239	20	2.7	20	78	0	70	60	15	18	5	1.54
11989933--11990217	50	5.6	50	75	7	209	29	20	26	23	1.99
11995232--11995319	46	2.0	44	84	8	115	34	23	18	23	1.96
11995320--11995520	51	4.0	51	82	8	248	30	28	16	23	1.97
11995326--11995512	101	1.8	102	93	3	324	31	27	17	23	1.97
11997713--11997786	27	2.7	27	82	0	85	36	17	21	24	1.95
12002807--12002862	22	2.5	22	76	0	58	32	1	5	60	1.29
12003204--12003248	15	2.8	16	83	6	56	37	2	0	60	1.09
12003204--12003255	15	3.3	15	75	19	52	36	1	0	61	1.07
12003220--12003256	19	2.0	19	89	5	58	40	0	0	59	0.97
12008136--12008174	13	3.0	12	85	14	51	61	0	35	2	1.10
12013062--12013111	26	1.9	26	84	8	66	62	2	22	14	1.42
12019467--12019517	23	2.2	24	82	3	59	29	0	1	68	1.00
12021952--12022001	16	3.0	16	76	5	55	54	2	10	34	1.45
12030006--12030766	89	8.8	86	70	12	366	28	22	19	30	1.98
12030002--12030770	217	3.6	217	88	2	1145	28	21	19	30	1.98
12030006--12030766	44	17.7	44	72	15	341	28	22	19	30	1.98
12050999--12051104	55	1.9	56	92	1	178	23	14	16	45	1.84
12051098--12051150	26	2.0	26	96	0	97	24	15	16	43	1.87
12055732--12055758	5	5.4	5	100	0	54	18	0	40	40	1.51
12056676--12056746	16	4.4	16	80	7	63	38	4	26	30	1.76
12056883--12057021	62	2.3	57	84	7	161	53	1	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12057038--12057071	15	2.4	15	90	9	54	61	0	0	38	0.96
12061131--12061182	21	2.5	21	73	14	54	34	15	26	23	1.94
12061516--12061562	17	2.8	17	79	20	62	55	6	2	36	1.37
12062064--12062100	9	4.1	9	92	0	65	29	10	13	45	1.77
12066761--12066803	23	1.9	22	85	4	59	9	4	27	58	1.49
12072421--12072454	17	2.0	17	94	0	59	29	32	11	26	1.92
12076032--12076069	20	1.9	20	89	10	60	31	0	0	68	0.90
12076122--12076203	23	3.9	23	72	23	74	40	1	2	56	1.20
12076123--12076226	38	2.6	37	77	20	104	41	0	1	55	1.17
12095486--12095539	26	2.1	26	86	6	74	33	22	3	40	1.71
12097720--12097933	26	8.2	26	67	17	104	50	4	1	42	1.32
12097740--12097774	18	2.0	17	88	5	52	54	2	2	40	1.30
12097516--12097805	145	2.0	145	87	5	426	47	3	2	45	1.35
12097720--12097838	41	2.9	41	69	20	104	52	3	1	42	1.27
12098123--12098206	42	2.0	42	100	0	168	21	26	11	40	1.88
12101610--12102286	174	3.9	173	87	1	870	29	17	23	29	1.97
12107577--12107624	23	2.1	23	84	7	62	39	4	8	47	1.53
12110867--12110901	16	2.2	16	94	0	61	51	0	2	45	1.16
12111225--12111420	100	2.0	101	87	1	286	33	17	16	32	1.93
12113226--12113282	27	2.0	29	86	6	82	15	0	36	47	1.46
12113313--12113630	95	3.3	96	83	4	383	39	3	17	39	1.66
12113665--12113935	126	2.2	126	90	0	425	33	18	19	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12118304--12118346	7	6.1	7	100	0	86	58	13	0	27	1.37
12118297--12118347	21	2.5	20	90	9	84	56	13	0	29	1.38
12119113--12119145	16	2.1	16	94	0	57	30	15	24	30	1.95
12119528--12119586	11	5.5	10	83	15	73	47	0	30	22	1.51
12123930--12123985	27	2.1	27	100	0	112	37	14	19	28	1.91
12124080--12124110	15	2.1	14	94	5	53	19	9	0	70	1.14
12131095--12131156	31	2.0	31	100	0	124	41	16	9	32	1.80
12133065--12133114	26	1.9	26	88	8	75	30	4	6	60	1.39
12133796--12133866	29	2.5	28	77	20	69	46	5	2	45	1.41
12147934--12148565	44	14.3	44	70	15	228	29	20	22	27	1.99
12148049--12148328	141	2.0	141	93	0	479	29	20	22	27	1.99
12148294--12148501	89	2.4	88	82	6	226	28	20	24	26	1.99
12147851--12148544	358	1.9	357	92	1	1149	29	20	22	27	1.99
12150923--12150947	13	1.9	13	100	0	50	8	0	24	68	1.16
12152515--12152659	41	3.5	41	92	0	227	28	18	27	25	1.98
12159670--12159855	41	4.5	41	95	0	327	27	19	27	24	1.99
12165907--12165944	2	19.5	2	89	5	51	55	0	0	44	0.99
12166695--12167341	322	2.0	321	98	0	1249	23	25	25	25	2.00
12168484--12168586	49	2.1	49	92	0	170	31	8	10	49	1.68
12170047--12170076	15	1.9	16	93	6	53	43	0	6	50	1.28
12170068--12170102	18	2.0	17	88	5	52	45	0	0	54	0.99
12170169--12170198	15	1.9	16	93	6	53	43	0	6	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12170190--12170223	18	1.9	18	88	5	52	47	2	0	50	1.16
12170289--12170318	15	1.9	16	93	6	53	43	0	6	50	1.28
12169971--12170850	120	7.3	120	96	1	1600	43	1	4	50	1.30
12170310--12170344	18	2.0	17	88	5	52	45	0	0	54	0.99
12170310--12170363	15	3.4	16	80	19	53	46	0	0	53	1.00
12170429--12170463	18	2.0	17	88	5	52	45	0	0	54	0.99
12170444--12170495	15	3.6	14	80	14	52	48	0	0	51	1.00
12170530--12170559	15	1.9	16	93	6	53	43	0	6	50	1.28
12170551--12170585	18	2.0	17	88	5	52	45	0	0	54	0.99
12170551--12170604	15	3.4	16	80	19	53	46	0	0	53	1.00
12169971--12170846	361	2.4	362	97	0	1637	43	1	4	50	1.30
12170650--12170679	15	1.9	16	93	6	53	43	0	6	50	1.28
12170671--12170705	18	2.0	17	88	5	52	45	0	0	54	0.99
12170791--12170825	18	2.0	17	88	5	52	45	0	0	54	0.99
12170990--12171082	44	2.1	44	86	8	125	36	27	5	30	1.79
12184110--12184145	16	2.2	16	90	9	56	38	0	0	61	0.96
12188428--12188510	38	2.2	38	100	0	166	54	8	8	28	1.60
12194598--12194638	20	2.0	20	85	0	55	39	7	2	51	1.43
12247420--12247490	33	2.2	33	92	0	115	25	26	14	33	1.94
12247530--12247585	16	3.5	16	87	0	76	26	10	42	19	1.84
12247514--12247584	32	2.2	32	85	9	92	26	11	45	16	1.82
12248668--12248725	30	1.9	30	89	0	89	13	18	34	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12250458--12250545	24	3.6	23	74	24	74	78	5	2	13	1.03
12250458--12250524	23	2.9	23	84	10	75	77	5	1	14	1.03
12250458--12250546	29	3.1	28	74	19	85	78	5	2	13	1.02
12250458--12250546	11	7.8	11	70	15	65	78	5	2	13	1.02
12250481--12250546	17	3.9	17	82	9	73	80	4	3	12	0.98
12250481--12250538	6	9.8	6	83	3	64	79	5	3	12	1.02
12250758--12250812	4	13.8	4	75	21	53	72	0	5	21	1.04
12250762--12250876	8	13.8	8	80	9	115	72	0	4	23	1.03
12258060--12258257	51	3.9	51	77	5	231	28	27	17	25	1.98
12258067--12258253	101	1.8	102	88	3	270	29	27	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207