genome.fa.s19.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  12  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4052152--4052190	17	2.2	18	95	4	71	64	0	0	35	0.94
4054681--4054713	4	8.2	4	100	0	66	24	0	0	75	0.80
4058556--4058651	45	2.1	45	98	0	183	33	8	11	46	1.70
4062559--4062628	9	7.8	9	95	0	104	24	10	27	38	1.87
4073656--4073720	27	2.4	27	78	0	76	35	18	16	29	1.93
4078336--4078427	42	2.2	42	86	0	130	22	23	13	40	1.89
4099684--4099741	19	2.8	22	77	17	70	27	0	10	62	1.28
4101622--4101684	33	1.9	33	84	9	85	44	4	3	47	1.40
4101677--4101710	17	1.9	18	88	5	52	5	26	14	52	1.64
4129044--4129077	17	2.0	17	88	0	50	64	8	0	26	1.22
4129630--4129655	7	3.7	7	100	0	52	15	0	61	23	1.33
4130283--4130329	14	3.4	14	79	2	51	80	2	6	10	0.96
4132446--4132531	27	3.2	26	76	9	91	66	6	2	24	1.28
4143977--4144013	16	2.3	16	95	0	65	37	5	32	24	1.78
4144182--4144471	120	2.4	120	96	1	537	52	4	1	42	1.27
4160591--4160643	3	17.7	3	100	0	106	33	0	0	66	0.92
4173822--4173858	16	2.3	16	95	0	65	37	5	32	24	1.78
4174894--4174924	9	3.4	9	90	0	53	25	12	22	38	1.90
4174977--4175013	9	4.1	9	92	0	65	45	13	10	29	1.77
4178309--4178356	23	2.1	23	100	0	96	33	4	27	35	1.76
4182056--4182102	24	1.9	25	86	4	69	44	0	2	53	1.12
4183773--4183909	45	3.0	45	83	1	184	20	18	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4187433--4187480	3	15.7	3	91	4	78	64	0	2	33	1.05
4188616--4188983	50	7.4	50	72	0	214	27	23	19	29	1.98
4188578--4189233	100	6.7	99	83	5	652	26	22	19	30	1.98
4189091--4189255	50	3.3	50	70	3	127	26	21	22	30	1.99
4189242--4189755	132	3.9	131	83	4	574	27	23	18	30	1.98
4189533--4189729	44	4.5	44	67	16	138	27	25	17	29	1.97
4189240--4189755	264	2.0	263	82	5	641	27	23	18	30	1.98
4189840--4190170	46	7.2	46	89	0	484	30	24	19	25	1.98
4189840--4190253	138	2.9	138	86	5	533	30	24	18	25	1.98
4190156--4190184	14	2.1	14	100	0	58	48	20	24	6	1.74
4190110--4190230	60	2.0	60	91	0	197	35	25	19	19	1.95
4190485--4190538	24	2.2	24	83	6	65	31	20	11	37	1.88
4196165--4196199	6	5.8	6	93	0	61	82	0	17	0	0.66
4196465--4196500	3	12.0	3	100	0	72	66	0	0	33	0.92
4218462--4218662	100	2.0	100	100	0	402	36	2	13	46	1.59
4220986--4221015	15	2.0	15	93	0	51	36	6	0	56	1.26
4254897--4254940	22	2.0	22	86	0	61	59	4	18	18	1.55
4255156--4255210	21	2.6	21	82	0	65	30	36	7	25	1.83
4255473--4255514	19	2.3	18	87	4	57	69	4	0	26	1.08
4256847--4257235	158	2.5	150	89	3	571	29	24	21	23	1.99
4260008--4260092	21	4.0	21	79	10	93	16	18	24	40	1.91
4261182--4261217	18	2.0	18	88	0	54	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4273907--4273931	10	2.5	10	100	0	50	92	0	0	8	0.40
4274003--4274081	10	8.0	10	83	5	72	69	0	1	29	0.96
4275448--4275482	17	2.1	17	94	0	61	68	5	0	25	1.11
4275881--4275922	20	2.1	20	86	8	59	30	0	2	66	1.04
4281296--4281356	17	3.4	17	80	8	50	16	6	3	73	1.17
4281326--4281396	8	8.5	8	74	9	61	15	2	2	78	0.98
4281279--4281399	19	6.9	17	68	20	56	18	4	2	75	1.08
4281326--4281398	25	2.9	24	80	11	76	16	2	2	78	0.99
4281362--4281406	15	2.8	17	83	12	51	22	0	2	75	0.91
4281425--4281490	23	2.8	22	86	11	78	48	0	0	51	1.00
4281434--4281509	39	1.9	39	81	5	91	47	0	1	51	1.09
4281514--4281587	31	2.6	29	76	19	82	32	2	2	62	1.23
4282539--4282686	72	2.1	72	92	0	242	50	2	3	43	1.33
4282814--4282870	20	2.9	20	75	12	55	77	1	3	17	1.00
4282823--4282870	13	3.7	13	75	10	53	79	2	4	14	0.98
4282898--4282931	10	3.6	9	92	4	50	85	0	2	11	0.71
4283017--4283045	15	2.0	15	93	6	51	37	0	0	62	0.96
4283153--4283404	36	7.2	35	77	14	218	53	1	1	42	1.21
4283195--4283242	21	2.2	22	88	3	71	50	2	2	45	1.25
4283339--4283382	21	2.2	20	91	4	70	63	0	0	36	0.95
4283253--4283404	13	12.9	11	68	24	64	56	1	1	40	1.16
4283136--4283416	35	7.9	34	73	14	187	54	1	1	42	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4283374--4283416	21	2.0	23	90	9	72	58	0	0	41	0.98
4283117--4283416	144	2.1	144	85	4	399	54	1	1	42	1.18
4283432--4283479	14	3.5	13	82	5	51	77	4	2	16	1.03
4283441--4283508	23	2.9	23	80	10	68	77	4	4	13	1.06
4283478--4283551	37	1.9	40	83	8	100	75	2	8	13	1.13
4284348--4284397	19	2.5	20	71	15	50	54	14	16	16	1.72
4285218--4285253	18	1.9	19	88	5	56	66	0	2	30	1.06
4289759--4289823	25	2.6	25	73	4	69	15	29	18	36	1.91
4289814--4289906	25	3.8	24	75	9	73	27	23	13	34	1.93
4294398--4294442	21	2.1	21	100	0	90	20	13	4	62	1.48
4298883--4298921	5	7.8	5	100	0	78	61	0	0	38	0.96
4301798--4301834	11	3.4	11	100	0	74	40	8	0	51	1.32
4301820--4301866	16	3.0	16	84	9	62	38	2	0	59	1.09
4301809--4301902	42	2.2	40	83	14	111	37	3	1	58	1.21
4309011--4309354	177	1.9	177	97	0	643	31	12	19	36	1.90
4309657--4309695	17	2.3	17	95	0	69	28	0	0	71	0.86
4311935--4312038	49	2.1	49	92	0	172	32	7	9	50	1.64
4313384--4313426	21	2.0	21	86	8	61	34	0	6	58	1.25
4313443--4313488	18	2.6	18	86	3	58	43	0	2	54	1.12
4313391--4313564	59	2.9	59	69	11	167	41	1	5	51	1.34
4313474--4313693	102	2.2	102	95	0	404	42	1	5	50	1.34
4313409--4313592	59	3.1	56	71	19	167	42	2	4	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4313870--4313967	49	2.0	49	84	9	128	34	27	4	33	1.76
4313949--4314000	16	3.2	16	86	0	77	25	30	3	40	1.73
4315610--4315639	10	2.8	11	90	10	53	53	26	0	20	1.46
4315614--4315646	10	3.3	10	91	8	50	57	24	0	18	1.40
4316486--4316625	40	3.5	40	75	6	142	30	22	17	30	1.96
4316761--4316807	24	2.0	23	84	12	60	48	14	0	36	1.44
4319358--4319401	23	2.0	21	86	8	61	45	38	4	11	1.61
4320521--4320598	5	15.4	5	80	17	81	57	0	0	42	0.98
4320525--4320598	7	10.7	7	70	21	50	58	0	0	41	0.98
4320521--4320598	41	1.9	40	84	7	104	57	0	0	42	0.98
4328705--4328742	18	2.1	19	95	5	69	52	0	0	47	1.00
4328699--4328742	10	4.4	10	83	16	56	54	0	2	43	1.12
4328698--4328743	11	4.5	11	81	18	55	56	0	2	41	1.11
4329918--4329947	9	3.3	9	90	0	51	40	0	23	36	1.55
4329918--4329956	18	2.2	18	90	0	60	35	0	28	35	1.58
4331699--4331890	67	2.9	67	89	0	285	37	15	20	26	1.92
4337268--4337336	31	2.2	31	80	12	79	43	0	11	44	1.40
4342636--4342676	20	2.0	20	90	0	64	31	2	19	46	1.63
4346425--4346579	84	1.8	84	90	4	249	36	18	7	36	1.80
4346593--4346668	37	2.1	37	82	5	91	64	5	2	27	1.28
4346605--4346668	17	3.6	18	70	8	58	64	6	1	28	1.27
4348854--4348930	9	8.4	9	84	8	84	42	25	9	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4349003--4349099	39	2.5	39	80	11	117	21	2	27	48	1.61
4349136--4349176	18	2.3	18	95	0	73	21	26	19	31	1.97
4350724--4350782	26	2.3	26	82	5	66	59	1	0	38	1.08
4352778--4352975	85	2.3	83	80	5	225	25	21	20	32	1.98
4352825--4352976	43	3.6	43	90	0	234	23	20	21	34	1.96
4353301--4353369	21	3.3	21	75	0	57	5	43	18	31	1.74
4358873--4359130	9	29.8	9	74	10	216	31	1	22	44	1.62
4358837--4359134	34	8.9	34	75	12	235	31	1	21	45	1.60
4358866--4359134	129	2.1	129	100	0	538	31	1	21	44	1.61
4359002--4359117	61	1.9	61	82	7	146	31	1	20	45	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207