genome.fa.s19.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  119  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36034611--36034689	18	4.4	17	78	9	86	68	3	20	7	1.30
36034609--36034680	24	3.0	24	83	0	72	70	2	19	6	1.22
36034609--36034662	6	9.0	6	83	0	72	75	0	18	5	0.98
36036592--36036667	34	2.2	34	95	0	134	35	7	13	43	1.73
36039670--36039726	27	2.1	27	93	3	98	15	14	21	49	1.80
36050884--36050955	33	2.4	30	75	20	78	55	4	4	36	1.38
36061006--36061030	11	2.3	11	100	0	50	44	0	0	56	0.99
36061887--36061948	28	2.2	28	88	8	92	25	0	17	56	1.41
36071315--36071462	74	2.0	74	90	0	233	23	6	21	48	1.72
36071542--36071623	24	3.5	24	73	9	80	41	13	10	34	1.79
36077477--36077661	50	3.6	50	82	4	163	22	28	21	27	1.99
36080274--36080416	74	1.9	74	94	0	250	25	6	20	46	1.74
36080520--36080582	21	2.8	23	73	11	67	39	15	9	34	1.80
36091982--36092113	50	2.6	51	82	3	176	34	15	12	37	1.85
36092241--36092349	53	2.1	53	98	0	209	32	5	13	48	1.66
36092731--36092887	59	2.7	59	98	0	305	45	7	17	30	1.75
36092848--36092923	36	2.1	36	97	0	143	48	7	15	27	1.73
36095692--36095730	12	3.2	12	85	0	51	20	23	5	51	1.67
36095978--36096224	50	4.8	50	83	3	251	21	29	22	26	1.99
36096561--36096619	30	2.0	30	86	0	82	32	23	8	35	1.85
36102801--36102872	15	4.9	15	68	13	51	55	1	29	13	1.47
36107315--36107341	14	1.9	14	100	0	54	37	0	3	59	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36116119--36116199	40	2.0	41	85	2	110	13	14	27	44	1.83
36120089--36120133	22	2.0	22	87	8	65	51	20	2	26	1.59
36123501--36123769	137	2.0	138	83	6	341	31	25	20	22	1.98
36132561--36132586	13	2.0	13	100	0	52	38	30	0	30	1.58
36162133--36162357	40	5.7	40	86	5	296	24	22	28	25	2.00
36162133--36162390	119	2.2	119	81	6	283	25	21	27	24	1.99
36171934--36171983	25	2.0	25	96	0	91	34	24	10	32	1.88
36177652--36177681	12	2.5	12	94	0	51	23	40	30	6	1.80
36193287--36193533	100	2.4	105	87	6	351	21	29	23	25	1.99
36193296--36193531	50	4.6	50	86	3	292	20	29	24	25	1.99
36200091--36200328	50	4.6	50	82	3	251	21	28	22	27	1.99
36207176--36207458	40	7.1	39	83	3	289	46	25	12	14	1.80
36207181--36207464	120	2.4	120	83	1	354	47	25	12	14	1.80
36207181--36207458	80	3.5	80	82	1	333	46	25	12	15	1.81
36208395--36208437	21	2.0	21	90	0	68	27	6	4	60	1.43
36210603--36210664	16	3.9	16	82	0	79	11	16	12	59	1.61
36210596--36210640	24	1.9	23	86	4	63	15	11	6	66	1.42
36210597--36210665	32	2.2	32	86	0	93	10	14	11	63	1.51
36214309--36214347	8	4.9	8	87	0	60	2	15	20	61	1.45
36219095--36219191	21	4.8	20	65	18	65	18	31	16	32	1.93
36219096--36219302	41	5.0	41	85	0	261	19	29	16	34	1.94
36225753--36225868	30	3.9	30	86	0	160	31	23	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36225988--36226103	26	4.5	26	78	0	115	43	22	18	16	1.88
36225988--36226103	52	2.2	52	90	3	189	43	22	18	16	1.88
36226330--36226408	27	3.0	27	81	3	97	24	13	20	41	1.88
36226336--36226408	26	2.7	27	80	4	94	26	13	20	39	1.90
36227633--36227675	21	2.0	21	100	0	86	44	23	4	27	1.73
36227662--36227931	41	6.6	41	82	1	299	23	29	14	32	1.94
36227693--36227756	21	3.1	21	69	17	62	23	35	14	26	1.93
36227662--36227935	82	3.3	82	82	2	343	22	28	14	33	1.94
36230926--36231014	45	2.0	45	95	0	160	32	24	17	24	1.97
36231028--36231214	51	3.7	50	76	7	198	31	29	17	21	1.96
36245918--36246056	40	3.5	40	78	3	154	17	32	17	33	1.93
36245935--36246050	20	5.8	20	72	4	90	18	34	18	29	1.94
36248377--36248409	15	2.1	16	88	5	50	21	24	0	54	1.45
36251611--36251641	5	6.4	5	96	3	55	80	0	0	19	0.71
36252525--36252588	23	2.8	23	75	0	65	43	34	1	20	1.61
36252661--36252838	23	7.8	23	78	10	177	42	21	1	35	1.60
36252662--36252838	46	3.9	46	83	3	207	41	21	1	35	1.61
36252851--36252925	23	3.3	23	77	7	73	33	24	6	36	1.81
36253493--36253525	15	2.2	15	94	0	57	51	21	3	24	1.62
36266200--36266231	12	2.7	12	90	0	55	28	18	46	6	1.73
36273166--36273324	79	2.0	79	97	0	300	43	12	15	28	1.83
36277411--36277453	21	2.0	21	86	8	61	27	9	4	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36281178--36281245	29	2.4	28	78	9	75	32	2	7	57	1.41
36281234--36281280	8	5.9	8	85	9	51	19	0	2	78	0.85
36281234--36281280	16	2.9	16	83	3	58	19	0	2	78	0.85
36283142--36283185	23	1.9	23	82	17	56	56	20	0	22	1.42
36284612--36284687	30	2.6	29	81	6	82	22	25	11	40	1.88
36284674--36284737	29	2.2	29	88	0	101	25	26	12	35	1.91
36289972--36290031	29	2.1	29	100	0	120	25	20	26	28	1.99
36295618--36295733	61	1.9	59	81	11	139	49	3	5	42	1.42
36298090--36298114	12	2.1	12	100	0	50	24	8	0	68	1.16
36301888--36301935	22	2.1	22	84	3	60	56	0	2	41	1.11
36304813--36304878	29	2.2	29	86	5	87	50	7	0	42	1.31
36304837--36304903	8	8.9	8	75	14	54	56	1	0	41	1.08
36304761--36304862	53	1.9	53	82	9	127	48	7	0	43	1.38
36304868--36304900	15	2.2	15	94	0	57	66	0	0	33	0.92
36313831--36313890	29	2.1	29	100	0	120	56	13	0	30	1.37
36332907--36332957	22	2.3	23	80	10	61	37	25	7	29	1.84
36349088--36349166	25	3.2	25	81	3	79	31	20	18	29	1.97
36349125--36349231	25	4.3	25	84	0	124	29	21	16	31	1.96
36349125--36349231	50	2.1	50	87	0	151	29	21	16	31	1.96
36360188--36360222	17	2.1	17	94	0	61	28	31	11	28	1.92
36365236--36365296	31	2.0	31	100	0	122	42	14	9	32	1.79
36371405--36371465	31	2.0	31	96	0	113	42	14	11	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36374239--36374337	40	2.6	38	81	3	117	47	6	5	41	1.50
36377204--36377333	49	2.6	49	80	6	138	23	25	20	31	1.98
36377261--36377450	50	3.7	50	80	4	146	24	28	19	27	1.98
36390795--36391044	27	9.3	27	84	1	250	39	22	17	20	1.92
36391409--36391615	28	7.4	28	91	2	292	19	17	26	36	1.94
36407264--36407564	150	2.0	150	94	0	521	28	20	18	32	1.96
36411896--36412028	30	4.5	31	82	5	123	22	29	11	36	1.89
36411897--36412081	89	2.1	89	84	7	241	22	29	12	35	1.91
36411927--36412115	30	6.4	30	77	7	154	21	28	12	37	1.90
36412105--36412173	29	2.4	29	77	0	75	26	30	10	33	1.89
36418431--36418594	79	2.1	80	96	1	303	39	19	6	34	1.78
36419280--36419377	30	3.3	30	82	0	106	24	22	13	39	1.90
36419279--36419411	60	2.2	60	82	0	158	24	25	13	36	1.92
36419310--36419528	30	7.4	30	76	8	112	21	27	14	36	1.92
36419398--36419470	29	2.5	30	93	2	121	16	28	10	43	1.82
36419459--36419528	29	2.4	29	88	4	106	21	27	12	38	1.90
36430155--36430209	25	2.2	25	81	12	60	49	5	1	43	1.36
36430813--36430845	17	1.9	17	100	0	66	36	27	0	36	1.57
36436082--36436115	15	2.3	15	94	0	59	14	14	0	70	1.17
36445384--36445577	58	3.3	57	79	5	183	29	13	20	36	1.92
36445440--36445577	29	4.8	29	88	1	188	27	15	21	35	1.93
36446871--36446926	27	2.2	26	84	9	71	17	25	5	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36447860--36447998	50	2.8	50	78	0	152	26	12	25	34	1.92
36450602--36450635	16	2.1	17	88	5	52	35	0	0	64	0.94
36456719--36456810	19	4.8	19	91	0	157	38	7	16	38	1.77
36456719--36456817	38	2.7	38	95	3	175	38	7	17	37	1.77
36457442--36457506	23	2.7	23	75	17	62	18	7	6	67	1.36
36462042--36462075	17	2.0	17	94	0	59	85	0	14	0	0.60
36463443--36463650	44	5.0	44	81	12	249	26	16	25	31	1.97
36463531--36463596	33	2.0	34	96	3	125	24	22	25	27	2.00
36463489--36463640	77	2.0	78	89	1	234	24	18	25	31	1.97
36463700--36464040	167	2.0	166	80	1	387	27	20	25	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207