genome.fa.s19.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  121  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36730242--36731018	120	6.5	120	95	2	1366	41	2	5	49	1.39
36730487--36730538	15	3.6	15	80	12	56	44	0	1	53	1.11
36730607--36730658	15	3.6	15	80	12	56	44	0	1	53	1.11
36730727--36730778	15	3.6	15	80	12	56	44	0	1	53	1.11
36730847--36730902	15	3.8	15	79	13	55	46	0	1	51	1.11
36730975--36731016	15	2.7	16	82	14	52	45	0	2	52	1.13
36730966--36731007	15	2.9	15	82	10	52	47	0	0	52	1.00
36731157--36731250	45	2.1	44	80	5	100	39	25	3	31	1.72
36734666--36734762	29	3.3	29	73	5	88	42	26	13	17	1.86
36734888--36735086	54	3.7	53	85	5	274	26	22	14	37	1.92
36742564--36742668	43	2.5	43	82	10	119	73	6	12	7	1.24
36743095--36743132	7	5.6	7	84	6	51	71	0	15	13	1.16
36743100--36743132	13	2.4	14	90	5	50	72	0	12	15	1.12
36744348--36744784	87	5.0	87	91	0	676	28	23	24	24	1.99
36744489--36744625	42	3.2	43	66	17	120	29	24	21	24	1.99
36744965--36745078	44	2.6	44	78	0	129	30	23	23	21	1.99
36750435--36750477	19	2.1	19	83	12	50	46	16	0	37	1.47
36750717--36750798	42	2.0	42	90	0	128	18	37	21	21	1.94
36756006--36756043	19	2.1	19	85	5	51	39	7	23	28	1.83
36756337--36756418	26	3.2	26	64	27	66	25	13	26	34	1.93
36756279--36756423	50	2.9	51	82	4	186	24	15	28	31	1.96
36756420--36756511	45	2.0	45	91	0	148	28	17	21	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36760550--36760675	30	4.3	29	76	7	137	19	26	14	40	1.89
36760574--36760771	30	6.6	30	78	6	152	23	23	13	39	1.90
36760550--36760735	89	2.1	89	82	4	232	22	24	13	39	1.91
36760663--36760781	60	2.0	60	86	3	168	27	21	13	36	1.91
36760666--36760791	30	4.2	29	83	7	137	27	21	12	38	1.90
36765050--36765252	30	6.8	30	71	9	139	20	24	14	40	1.90
36765093--36765252	59	2.7	59	75	9	164	20	23	13	42	1.88
36765050--36765308	89	2.9	88	80	4	286	20	24	15	39	1.91
36767290--36767400	43	2.6	43	84	2	134	30	17	23	28	1.97
36775923--36775982	30	2.0	31	83	9	79	41	0	38	20	1.52
36779451--36779547	40	2.4	41	86	6	135	35	9	17	38	1.82
36779450--36779521	19	3.7	19	90	7	117	34	11	16	37	1.84
36783878--36783918	18	2.3	18	95	0	73	68	9	17	4	1.35
36785507--36785783	44	6.3	42	77	7	266	26	15	26	31	1.96
36785491--36785783	132	2.2	132	94	0	505	26	15	26	31	1.96
36785795--36786021	44	5.2	44	60	8	102	26	28	24	20	1.99
36785857--36785998	43	3.3	43	63	14	101	27	29	26	16	1.97
36785783--36786048	88	3.0	88	92	0	451	28	28	24	18	1.98
36786059--36786235	44	4.0	44	92	0	273	27	18	27	27	1.98
36786674--36786764	40	2.2	40	80	7	103	34	9	18	37	1.84
36786674--36786738	19	3.3	19	85	8	85	33	12	16	36	1.87
36788886--36788932	20	2.3	20	85	0	67	29	36	12	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36807327--36807362	13	2.8	13	91	0	54	33	22	0	44	1.53
36807397--36807472	40	1.9	40	83	5	100	39	17	2	40	1.63
36807463--36807520	13	4.5	13	77	0	62	32	15	1	50	1.55
36807453--36807520	26	2.6	26	95	2	118	32	14	2	50	1.58
36807958--36807995	19	2.0	20	84	5	51	57	2	7	31	1.41
36808210--36808255	23	2.0	23	100	0	92	30	0	43	26	1.55
36810898--36811082	101	1.8	102	89	3	293	24	17	27	31	1.97
36810894--36811084	51	3.8	51	83	4	235	24	16	27	31	1.96
36811004--36811084	26	3.2	26	62	22	62	23	14	28	33	1.94
36811091--36811178	45	2.0	45	93	0	149	27	18	21	32	1.96
36816974--36817085	25	4.6	25	77	9	97	24	23	21	31	1.98
36817000--36817085	24	3.5	24	75	13	86	24	22	23	30	1.99
36817255--36817324	27	2.5	26	82	15	70	42	0	20	37	1.52
36818652--36818701	24	2.2	23	82	13	59	34	4	32	30	1.76
36824148--36824204	27	2.1	27	87	3	80	50	3	5	40	1.42
36825136--36825312	85	2.1	85	96	0	327	39	20	8	31	1.83
36831333--36831462	13	9.8	13	66	9	57	37	19	3	39	1.70
36831548--36831613	25	2.6	25	82	0	78	27	21	18	33	1.96
36836698--36836821	41	3.0	40	82	6	142	42	18	18	20	1.89
36836833--36836874	20	2.1	20	100	0	84	42	14	9	33	1.78
36839606--36839649	18	2.4	18	88	11	63	72	2	20	4	1.13
36842860--36842931	33	2.1	34	92	2	119	38	6	13	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36844331--36844395	29	2.2	29	97	2	121	32	30	6	30	1.82
36851181--36851590	209	2.0	209	96	0	757	30	18	23	27	1.97
36851726--36851763	5	7.2	5	91	8	58	0	57	42	0	0.98
36851726--36851763	11	3.5	11	85	7	60	0	57	42	0	0.98
36851726--36851762	16	2.3	16	95	0	65	0	59	40	0	0.97
36851771--36851849	39	2.0	40	87	4	117	34	1	0	64	1.02
36854762--36854873	30	3.7	30	80	2	136	31	24	14	30	1.94
36856520--36856553	11	3.1	11	87	12	52	20	0	35	44	1.52
36858179--36858217	20	2.0	20	94	0	69	17	15	30	35	1.91
36858863--36858916	19	2.8	19	94	0	99	37	9	16	37	1.81
36858863--36858939	38	1.9	40	87	10	113	36	7	16	38	1.78
36859451--36859493	21	2.0	21	86	9	59	34	6	11	46	1.67
36860851--36860879	14	2.0	15	93	6	51	75	0	3	20	0.94
36867649--36867680	15	2.1	15	100	0	64	25	18	28	28	1.98
36868737--36868791	19	3.3	19	62	32	52	40	1	0	58	1.09
36868922--36868956	18	2.0	17	88	5	52	42	2	0	54	1.15
36871504--36871605	52	2.0	52	98	0	195	37	4	17	40	1.71
36888781--36888830	22	2.3	22	89	0	73	32	2	16	50	1.56
36892559--36892603	22	2.0	22	91	0	72	33	2	15	48	1.57
36899376--36899428	25	2.1	25	100	0	106	28	11	18	41	1.85
36909925--36909953	12	2.3	13	94	5	51	55	0	10	34	1.34
36910089--36910125	19	1.9	19	100	0	74	37	8	16	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36910084--36910186	45	2.3	43	84	12	129	41	6	12	38	1.70
36910095--36910187	21	4.0	24	75	20	83	41	6	13	37	1.71
36910610--36910643	13	2.6	13	95	0	59	11	5	0	82	0.83
36911142--36911229	23	3.5	24	79	13	88	36	1	7	54	1.37
36911302--36911346	13	3.3	13	79	11	54	35	4	0	60	1.17
36914645--36914677	6	5.5	6	100	0	66	84	0	15	0	0.61
36917270--36917888	44	14.1	44	65	11	165	30	19	24	25	1.98
36917258--36918056	263	3.0	263	91	0	1285	30	19	24	25	1.98
36917258--36918056	132	6.1	132	92	0	1294	30	19	24	25	1.98
36918057--36918220	44	3.7	43	77	9	152	30	17	22	29	1.96
36918570--36918633	19	3.3	19	89	8	101	39	9	14	37	1.78
36918571--36918646	21	3.7	21	92	3	120	40	10	11	36	1.76
36919258--36919301	22	2.0	22	90	0	70	11	27	22	38	1.88
36935517--36935545	12	2.3	13	94	5	51	55	0	10	34	1.34
36943024--36943381	27	13.2	27	85	2	441	39	19	15	25	1.90
36943505--36943581	27	2.8	26	78	7	82	22	24	20	32	1.98
36943583--36943633	26	2.0	26	84	0	66	21	21	23	33	1.97
36945441--36945499	25	2.3	26	85	8	86	42	22	16	18	1.89
36948432--36948493	31	2.0	31	96	0	115	29	22	8	40	1.82
36958526--36958593	30	2.3	30	81	0	82	25	29	26	19	1.98
36961616--36961647	15	2.1	16	94	5	57	12	6	3	78	1.06
36964785--36964931	40	3.7	40	83	5	120	25	27	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36964831--36965011	80	2.3	80	83	9	219	27	27	20	23	1.99
36964828--36965011	40	4.6	40	81	7	196	28	27	20	23	1.99
36970052--36970081	16	1.9	15	93	6	51	43	33	3	20	1.68
36970515--36970578	18	3.6	18	72	8	58	6	20	1	71	1.15
36973098--36973242	41	3.6	41	81	0	166	28	20	27	24	1.99
36980884--36980995	41	2.7	41	88	0	170	28	20	28	22	1.98
36984220--36984249	13	2.3	13	94	0	51	23	6	13	56	1.60
36986486--36986590	43	2.5	43	88	1	158	30	29	17	22	1.96
36986574--36986726	33	4.5	34	68	24	108	33	28	19	18	1.95
36986528--36986730	103	2.0	103	97	0	379	33	28	18	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207