genome.fa.s19.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  56  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16428172--16428475	94	3.3	94	70	12	268	27	21	19	31	1.97
16427793--16428339	138	4.0	138	81	4	568	28	20	18	32	1.96
16440064--16440108	21	2.3	19	84	7	54	71	6	2	20	1.20
16445765--16445806	21	2.0	21	100	0	84	52	14	4	28	1.62
16446211--16446253	22	2.0	22	95	0	77	44	16	9	30	1.79
16447951--16448004	18	3.0	17	83	8	63	42	14	0	42	1.46
16448814--16448863	18	2.7	19	74	17	52	74	0	10	16	1.08
16452853--16452916	33	1.9	33	87	0	92	32	3	6	57	1.39
16456814--16456848	3	11.7	3	100	0	70	68	0	31	0	0.90
16465304--16465337	15	2.3	15	100	0	68	44	5	0	50	1.26
16466820--16466844	12	2.1	12	100	0	50	48	8	0	44	1.32
16474031--16474125	45	2.1	45	90	0	154	27	18	23	30	1.98
16498660--16498711	26	2.0	26	96	0	95	28	34	23	13	1.92
16498420--16498789	103	3.6	103	93	2	600	30	30	20	19	1.97
16502181--16502210	13	2.3	13	94	0	51	60	20	16	3	1.50
16506654--16506702	18	2.6	18	83	6	62	48	2	4	44	1.33
16506574--16506965	130	3.0	130	98	0	757	38	8	9	43	1.68
16506784--16506832	18	2.6	18	83	6	62	48	2	4	44	1.33
16506914--16506962	18	2.6	18	83	6	62	48	2	4	44	1.33
16507572--16507602	14	2.2	14	94	0	53	19	41	0	38	1.51
16508153--16508425	137	2.0	138	81	3	318	32	27	17	21	1.96
16515670--16515726	26	2.2	27	87	6	82	40	7	19	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16518415--16518443	6	4.8	6	100	0	58	0	68	0	31	0.89
16520876--16520918	16	2.8	16	92	3	70	41	0	16	41	1.48
16520917--16520951	18	2.0	17	88	5	52	45	0	0	54	0.99
16521037--16521071	18	2.0	17	88	5	52	45	0	0	54	0.99
16520892--16521213	120	2.7	120	98	0	610	44	0	5	49	1.30
16521157--16521191	18	2.0	17	88	5	52	45	0	0	54	0.99
16521147--16521419	147	1.8	149	96	1	505	47	2	3	46	1.34
16521304--16521338	18	2.0	17	88	5	52	45	0	0	54	0.99
16521500--16521594	45	2.1	45	86	1	129	32	26	6	34	1.82
16521575--16521626	16	3.2	16	94	0	86	34	36	0	28	1.58
16521694--16521723	7	4.3	7	100	0	60	60	26	0	13	1.34
16525455--16525521	31	2.2	31	83	0	80	35	4	14	44	1.66
16529820--16529844	12	2.1	12	100	0	50	24	0	0	76	0.80
16531250--16531296	25	1.9	25	91	4	78	63	0	4	31	1.13
16531640--16531690	24	2.2	23	85	3	66	23	29	0	47	1.52
16531947--16532058	31	3.5	32	84	4	111	60	0	1	37	1.07
16531981--16532038	11	5.4	11	76	17	59	58	0	1	39	1.08
16531973--16532058	31	2.8	31	90	0	145	60	0	2	37	1.10
16531988--16532067	20	4.5	19	74	19	75	58	0	1	40	1.06
16545952--16546019	35	2.0	34	85	2	91	47	7	10	35	1.66
16546300--16546332	17	1.9	17	100	0	66	48	0	9	42	1.35
16546786--16546826	19	2.0	21	86	9	59	63	0	4	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16556260--16556284	2	12.5	2	100	0	50	52	0	0	48	1.00
16557671--16557726	19	2.9	18	76	10	58	33	3	3	58	1.32
16557701--16557771	28	2.4	30	79	4	83	40	2	1	54	1.23
16557732--16557769	20	1.9	20	89	10	60	42	0	0	57	0.98
16557699--16557782	29	2.9	28	75	10	80	38	3	1	57	1.24
16561153--16561188	3	12.0	3	100	0	72	66	0	0	33	0.92
16570614--16570727	61	1.9	60	85	5	160	50	1	5	42	1.35
16570702--16570750	20	2.7	18	81	12	64	48	2	0	48	1.12
16570715--16570752	20	1.9	20	94	0	67	47	2	0	50	1.15
16570671--16570813	68	2.0	72	80	7	161	51	4	2	41	1.38
16573903--16574010	54	2.0	54	100	0	216	37	18	14	29	1.91
16577598--16577667	32	2.2	32	97	2	131	34	18	7	40	1.78
16582493--16582615	52	2.3	53	81	9	135	23	5	33	37	1.79
16586143--16586197	27	2.0	27	96	0	101	40	21	12	25	1.89
16587085--16587117	3	11.0	3	100	0	66	33	33	0	33	1.58
16601485--16601541	16	3.5	17	77	13	57	10	10	3	75	1.16
16601481--16601545	22	3.0	23	78	10	66	10	10	4	73	1.22
16601485--16601572	28	3.5	26	74	16	71	14	7	4	72	1.23
16603070--16603138	16	4.3	16	92	0	102	39	4	33	23	1.74
16603070--16603138	32	2.2	32	94	0	120	39	4	33	23	1.74
16603120--16603212	44	2.1	46	87	4	136	29	4	30	36	1.77
16603120--16603230	39	2.6	44	79	13	124	31	4	29	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16603353--16603492	26	5.5	26	68	14	96	55	2	0	40	1.20
16603373--16603506	18	7.9	18	68	17	81	56	2	1	39	1.21
16603407--16603592	59	3.0	63	71	21	212	51	3	2	41	1.34
16612637--16612698	31	2.0	31	96	0	115	40	3	19	37	1.68
16627035--16627074	20	2.0	20	90	0	62	42	2	22	32	1.67
16633783--16633822	19	2.1	19	95	0	71	40	17	0	42	1.49
16642929--16642972	21	2.2	20	87	4	61	31	20	9	38	1.84
16643717--16643750	3	11.3	3	100	0	68	67	0	0	32	0.91
16644681--16644710	10	2.9	10	95	5	51	30	0	0	70	0.88
16646335--16646370	16	2.2	16	90	0	54	44	0	22	33	1.53
16649419--16649470	24	2.2	24	85	0	68	38	3	7	50	1.50
16653836--16653887	24	2.2	24	85	0	68	38	3	7	50	1.50
16654588--16654676	44	2.0	44	95	0	160	38	5	7	48	1.56
16660687--16660724	19	1.9	19	85	15	51	63	13	0	23	1.30
16660899--16660951	21	2.5	21	76	11	56	35	5	5	52	1.49
16662708--16662737	14	2.1	14	93	0	51	56	26	0	16	1.40
16663054--16663115	20	3.1	20	65	9	54	27	19	32	20	1.97
16663006--16663155	40	3.8	40	86	3	187	34	17	28	20	1.95
16667011--16667048	19	2.0	19	85	10	51	36	13	26	23	1.91
16667360--16667456	20	4.8	20	68	22	67	42	2	4	51	1.32
16667362--16667494	61	2.2	58	89	4	203	42	3	3	51	1.35
16671527--16671619	45	2.1	45	82	8	109	24	18	13	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16676995--16677033	13	3.0	13	92	7	62	79	0	0	20	0.73
16683688--16683726	20	2.0	20	90	10	62	56	10	23	10	1.63
16689117--16689166	13	3.8	13	75	0	55	30	2	30	38	1.69
16690663--16690699	15	2.4	16	82	13	51	51	8	10	29	1.65
16692474--16692540	34	1.9	35	87	3	100	31	8	14	44	1.76
16698863--16698900	14	2.8	14	84	4	51	65	2	0	31	1.06
16699079--16699115	18	2.0	20	84	10	51	51	0	0	48	1.00
16699080--16699116	17	2.1	19	85	10	51	51	0	0	48	1.00
16702712--16703113	197	2.0	199	94	3	709	26	21	18	32	1.97
16718870--16718896	11	2.5	11	100	0	54	37	0	37	25	1.57
16719012--16719059	13	3.7	13	85	0	69	22	8	31	37	1.84
16727819--16727949	51	2.6	51	82	2	165	26	17	22	32	1.96
16727766--16727949	101	1.8	102	88	3	282	26	17	23	32	1.97
16727954--16728048	45	2.1	45	90	0	154	27	18	23	30	1.98
16737899--16737958	25	2.4	26	80	8	70	25	31	18	25	1.97
16755070--16755133	32	2.0	32	81	6	76	28	4	1	65	1.21
16757413--16757445	12	2.8	12	90	0	57	51	0	18	30	1.46
16768543--16768590	22	2.3	21	85	7	62	27	2	8	62	1.35
16779640--16779676	18	2.0	19	94	5	67	48	2	0	48	1.15
16779646--16779688	18	2.3	18	88	4	59	55	0	2	41	1.12
16779703--16779750	22	2.3	20	86	13	62	29	4	2	64	1.23
16784330--16784388	30	2.0	30	86	6	84	49	11	6	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16793923--16794404	149	3.2	149	82	8	507	22	28	20	29	1.98
16793922--16794315	199	2.0	199	97	0	743	21	28	21	28	1.98
16793923--16794404	50	9.6	50	80	9	457	22	28	20	29	1.98
16794326--16794424	48	2.1	48	84	0	126	27	27	19	26	1.99
16796965--16797008	11	3.9	11	82	5	52	34	0	2	63	1.07
16799762--16799806	22	2.0	22	86	0	63	42	6	13	37	1.70
16803079--16803143	31	2.1	31	100	0	130	32	16	6	44	1.73
16812122--16812157	18	2.0	18	94	0	63	33	19	11	36	1.87
16814701--16814828	49	2.6	50	80	7	145	27	28	3	40	1.74
16818427--16818471	18	2.2	22	85	14	62	42	4	4	48	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207