genome.fa.s19.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  187  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56916393--56916418	6	4.3	6	100	0	52	15	0	0	84	0.62
56917230--56917362	66	2.0	66	94	0	230	39	19	6	33	1.78
56919887--56919933	19	2.5	19	86	6	69	34	0	2	63	1.06
56929165--56929270	11	9.4	11	71	16	56	3	16	1	77	1.01
56929167--56929273	5	20.4	5	72	16	74	3	17	1	76	1.02
56933990--56934468	238	2.0	238	98	0	931	35	15	16	31	1.90
56934940--56934990	20	2.5	21	75	18	54	13	19	7	58	1.59
56936923--56936954	16	2.0	16	93	0	55	12	34	31	21	1.91
56938728--56938775	5	9.4	5	86	13	71	2	18	0	79	0.84
56947727--56947770	23	2.0	22	86	13	63	0	22	4	72	1.02
56947755--56947803	5	9.4	5	85	14	64	2	18	0	79	0.83
56947731--56947807	26	3.0	25	83	11	93	1	20	2	75	1.00
56951556--56951751	27	7.3	27	78	2	142	42	22	15	19	1.89
56952151--56952263	28	4.0	28	89	0	163	24	21	20	33	1.97
56955146--56955443	33	8.4	33	67	22	131	33	27	17	20	1.96
56955163--56955308	42	3.7	42	73	22	134	31	25	19	23	1.98
56955134--56955345	76	2.8	75	91	0	334	32	26	18	22	1.97
56955134--56955345	75	2.8	76	89	2	329	32	26	18	22	1.97
56955245--56955489	102	2.4	102	93	0	409	33	27	17	21	1.95
56955802--56955859	30	1.9	30	85	0	80	31	24	6	37	1.82
56957175--56957205	15	2.1	15	100	0	62	22	19	25	32	1.97
56959406--56959457	8	6.5	8	77	14	54	1	15	0	82	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56959397--56959453	25	2.2	25	84	9	71	1	19	1	77	0.95
56959412--56959457	21	2.2	21	88	11	69	2	15	0	82	0.76
56959409--56959460	20	2.6	19	83	16	70	1	17	0	80	0.80
56967493--56967537	5	9.0	5	100	0	90	40	0	0	60	0.97
56971607--56971632	10	2.6	10	100	0	52	57	0	19	23	1.40
56973010--56973069	18	3.2	19	76	23	56	51	0	0	48	1.00
56973143--56973191	24	2.1	23	81	11	55	61	0	0	38	0.96
56976311--56976383	32	2.3	31	81	6	85	49	8	9	32	1.65
56979701--56979790	38	2.4	37	78	12	96	28	27	22	21	1.99
56980143--56980185	3	14.0	3	85	4	59	60	0	0	39	0.97
56980859--56980903	14	3.2	14	81	6	56	2	15	8	73	1.18
56980859--56980918	30	2.1	28	81	9	68	3	15	6	75	1.15
56981083--56981130	19	2.5	19	86	0	69	50	2	0	47	1.12
56985963--56986005	21	2.0	21	82	8	52	23	20	4	51	1.66
56987049--56987141	39	2.5	37	80	7	98	27	29	22	20	1.98
56987496--56987531	3	12.0	3	87	0	54	61	0	0	38	0.96
56988238--56988277	20	2.0	20	85	9	55	2	15	5	77	1.04
56988407--56988474	31	2.3	28	78	9	73	41	2	1	54	1.24
56988453--56988491	21	1.9	20	84	5	51	46	2	0	51	1.14
56996867--56996901	17	2.1	17	89	10	54	37	0	2	60	1.12
56997214--56997247	18	1.9	17	94	5	59	41	0	2	55	1.15
56997774--56997901	37	3.5	37	68	14	93	42	6	4	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56997759--56997905	73	2.0	76	90	4	237	39	6	6	47	1.55
56998776--56998815	21	1.9	21	84	0	53	42	0	5	52	1.23
57008835--57008893	28	2.0	31	83	9	79	44	0	5	50	1.24
57009776--57009908	45	3.0	44	77	15	134	25	18	25	30	1.98
57013525--57013775	36	6.1	46	74	21	204	36	13	20	29	1.91
57013561--57013751	36	5.0	36	83	12	247	37	14	19	28	1.91
57013525--57013715	82	2.3	82	96	0	346	37	12	21	28	1.90
57013561--57013775	118	1.8	117	94	1	385	36	14	19	29	1.91
57015683--57015968	142	2.0	142	91	0	464	30	19	25	24	1.98
57016130--57016158	14	2.1	14	100	0	58	51	6	0	41	1.28
57016082--57016248	62	2.7	62	92	2	266	33	6	9	50	1.61
57017440--57017470	14	2.2	14	94	0	53	41	6	19	32	1.77
57019112--57019159	14	3.1	16	77	17	55	68	8	0	22	1.16
57019398--57019528	6	23.0	6	69	20	52	0	41	1	56	1.08
57019402--57019435	17	2.1	16	94	5	59	0	41	2	55	1.15
57019474--57019528	15	3.5	15	95	5	92	0	40	0	60	0.97
57020062--57020143	31	2.6	31	88	0	110	29	14	10	45	1.79
57025300--57025444	53	2.7	53	80	4	146	31	23	10	35	1.88
57032877--57032946	27	2.6	26	84	8	86	65	0	1	32	1.01
57032877--57032945	28	2.5	28	84	11	97	65	0	1	33	1.02
57035964--57036138	4	44.2	4	97	2	336	50	25	0	24	1.50
57036398--57036700	110	2.8	108	87	3	414	30	18	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57048495--57048650	50	3.1	49	67	17	122	32	22	20	24	1.98
57048426--57048703	100	2.8	100	84	1	340	33	22	18	24	1.97
57048825--57049066	87	2.8	85	74	9	229	31	19	20	28	1.97
57050590--57050628	3	13.3	3	84	15	55	30	2	0	66	1.05
57050843--57050884	4	10.5	4	100	0	84	50	23	0	26	1.50
57051134--57051437	110	2.8	109	87	3	427	29	18	20	31	1.96
57052307--57052362	23	2.4	23	74	11	60	44	0	1	53	1.11
57052384--57052426	22	1.9	23	90	4	70	51	0	0	48	1.00
57052405--57052438	13	2.5	14	85	9	52	50	0	0	50	1.00
57052427--57052492	29	2.2	31	86	10	93	53	1	1	43	1.19
57055638--57055722	34	2.4	36	80	9	104	47	11	14	27	1.78
57055638--57055782	18	8.2	18	74	12	122	45	11	14	28	1.79
57055639--57055770	70	1.9	70	80	3	158	46	11	14	28	1.79
57055750--57055796	15	2.9	16	87	9	60	48	8	17	25	1.74
57055729--57055800	18	4.1	19	77	16	59	44	8	15	31	1.76
57056367--57056408	20	2.1	20	86	0	57	0	14	4	80	0.86
57057286--57057443	30	5.3	29	75	9	124	39	4	23	32	1.75
57057635--57059420	80	22.8	78	87	7	2096	37	19	15	27	1.92
57057635--57059420	158	11.4	154	86	8	2053	37	19	15	27	1.92
57060275--57060337	21	3.0	20	88	9	74	0	6	6	87	0.68
57060275--57060346	12	5.5	13	77	8	67	1	6	5	86	0.77
57060275--57060346	19	3.7	18	77	17	65	1	6	5	86	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57060275--57060337	1	63.0	1	74	0	54	0	6	6	87	0.68
57066069--57066339	18	15.5	17	75	11	192	45	11	14	29	1.78
57066068--57066335	35	7.6	35	75	10	206	45	11	13	29	1.79
57066303--57066346	18	2.7	16	86	10	54	50	9	18	22	1.75
57066068--57066324	53	4.8	52	83	8	263	45	11	13	29	1.78
57066919--57066951	7	4.9	7	92	7	59	0	0	12	87	0.53
57066920--57066950	13	2.4	13	100	0	62	0	0	12	87	0.55
57067115--57067152	19	2.0	20	89	5	60	2	18	15	63	1.43
57067155--57067179	13	1.9	13	100	0	50	4	8	24	64	1.38
57067255--57067337	9	9.2	9	76	7	71	1	18	0	80	0.77
57067255--57067334	13	6.2	13	80	9	83	1	17	0	81	0.76
57067253--57067337	17	4.9	17	72	21	70	1	17	0	81	0.76
57067251--57067331	22	3.7	22	83	8	112	1	17	0	81	0.76
57067277--57067340	22	2.6	26	76	21	82	0	23	0	76	0.79
57067598--57067642	23	2.0	23	82	8	56	4	11	17	66	1.38
57067966--57068044	30	2.7	30	84	11	94	43	2	18	35	1.64
57072875--57072947	27	2.8	24	75	20	67	53	1	1	43	1.17
57075615--57075658	21	2.1	21	95	0	79	29	40	9	20	1.83
57076247--57076489	83	2.9	82	82	6	292	29	21	20	27	1.98
57080254--57080292	18	2.2	18	85	0	51	43	2	10	43	1.52
57086698--57086729	2	16.0	2	100	0	64	50	50	0	0	1.00
57089107--57089136	16	1.9	15	93	6	51	13	3	3	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57092662--57092708	20	2.3	20	85	3	58	29	4	6	59	1.41
57092979--57093049	24	3.0	23	82	10	72	33	0	0	66	0.92
57093007--57093048	13	3.6	12	78	18	52	28	0	0	71	0.86
57093000--57093049	23	2.1	24	85	3	66	32	0	0	68	0.90
57092992--57093061	24	2.8	24	78	10	70	32	0	1	65	1.01
57093023--57093080	18	3.3	16	75	15	53	32	0	3	63	1.11
57096197--57096508	151	2.1	151	99	0	615	37	16	16	28	1.91
57097373--57097399	14	1.9	14	100	0	54	62	0	0	37	0.95
57097846--57097897	22	2.4	22	87	6	70	42	5	1	50	1.37
57097881--57097914	17	1.9	18	88	5	52	44	0	2	52	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207