genome.fa.s19.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  155  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47561029--47561062	16	2.1	16	100	0	68	44	11	32	11	1.77
47565524--47565699	60	2.9	61	77	9	148	41	4	11	42	1.62
47566896--47566935	19	2.2	18	86	4	53	62	10	2	25	1.39
47576850--47576925	38	2.0	38	84	5	100	28	6	19	44	1.76
47576899--47576966	31	2.2	30	82	7	75	25	8	20	45	1.80
47584419--47584458	18	2.1	20	86	9	57	20	5	0	75	0.99
47584433--47584515	3	27.7	3	72	13	64	30	3	2	63	1.24
47584422--47584507	15	5.6	14	73	21	50	27	4	2	65	1.25
47584422--47584494	18	4.1	18	73	19	55	27	2	2	67	1.18
47595768--47595823	26	2.2	25	81	15	62	37	19	7	35	1.79
47601721--47601783	22	2.7	23	80	11	58	14	7	4	73	1.23
47605834--47605870	18	2.1	18	100	0	74	45	21	0	32	1.52
47614156--47614215	15	4.4	15	76	21	53	18	26	28	26	1.98
47623741--47623991	27	9.3	27	78	3	193	35	21	20	22	1.96
47623789--47623991	81	2.5	81	83	5	250	35	19	20	24	1.96
47623759--47623991	54	4.3	54	76	5	220	35	20	21	23	1.96
47624054--47624112	24	2.5	24	83	10	77	20	8	27	44	1.80
47624286--47624496	32	6.6	32	75	9	153	20	21	22	35	1.96
47624351--47624496	64	2.3	64	84	2	195	19	21	22	36	1.95
47624508--47624554	22	2.1	22	84	0	58	21	14	14	48	1.80
47630213--47630415	106	1.9	106	100	0	406	36	4	14	43	1.67
47630709--47630746	20	1.9	20	100	0	76	50	13	21	15	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47631370--47631420	24	2.1	24	85	7	68	50	0	29	19	1.48
47638954--47638979	8	3.2	8	100	0	52	73	0	0	26	0.84
47638881--47639031	76	2.0	75	96	2	277	56	2	0	40	1.13
47641275--47641497	33	6.4	33	70	23	152	32	28	19	19	1.97
47641298--47641528	102	2.3	102	93	3	394	31	28	19	19	1.97
47641553--47641741	51	3.8	51	78	10	219	31	29	15	23	1.95
47641550--47641733	102	1.8	99	88	7	275	32	28	16	22	1.96
47645674--47645743	30	2.3	31	77	2	79	28	18	5	47	1.71
47656577--47656625	23	2.1	23	100	0	98	53	10	8	28	1.63
47669442--47669485	19	2.4	19	84	3	63	50	0	0	50	1.00
47669495--47669537	16	2.6	15	82	17	50	67	0	2	30	1.03
47672976--47673009	2	17.0	2	93	0	59	50	47	2	0	1.16
47677683--47677714	16	2.0	16	93	0	55	53	9	6	31	1.58
47678456--47678549	46	2.0	47	85	2	127	17	17	6	59	1.57
47678456--47678517	23	2.7	24	71	14	58	17	17	4	59	1.54
47678349--47678547	106	1.9	107	85	3	276	17	16	6	60	1.55
47688395--47688435	20	2.0	20	95	0	73	34	14	17	34	1.90
47690480--47690736	23	11.0	23	80	4	291	38	19	13	28	1.90
47690499--47690739	70	3.4	70	94	1	428	39	19	13	28	1.89
47693754--47693786	15	2.2	15	100	0	66	60	12	15	12	1.59
47694771--47694823	12	4.5	12	75	11	56	18	9	9	62	1.52
47694771--47694823	24	2.2	24	83	3	63	18	9	9	62	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47694847--47694939	47	2.0	47	100	0	186	20	21	19	38	1.93
47703466--47703517	27	1.9	27	88	0	77	32	21	25	21	1.98
47708053--47708083	3	10.3	3	92	0	53	61	0	0	38	0.96
47718518--47718628	37	3.0	37	91	0	177	37	13	20	27	1.91
47726132--47726242	37	3.0	37	90	0	168	37	12	20	28	1.90
47730489--47730533	20	2.3	20	96	3	83	28	31	13	26	1.94
47731133--47731176	23	1.9	23	86	9	63	9	0	34	56	1.31
47731759--47731817	30	2.0	30	86	0	82	22	10	44	23	1.83
47752061--47752113	16	3.3	16	73	17	56	45	3	3	47	1.39
47754722--47754767	23	2.0	24	86	4	67	36	17	8	36	1.81
47754748--47754799	19	2.6	21	84	12	81	40	13	11	34	1.81
47755142--47755330	44	4.3	44	64	12	109	29	24	14	31	1.95
47755029--47755329	132	2.3	132	87	3	419	30	23	16	29	1.96
47755500--47755994	220	2.2	220	88	1	715	30	25	15	27	1.96
47755499--47756005	44	11.5	44	77	6	483	30	25	15	28	1.96
47755520--47755994	132	3.6	132	87	2	584	30	25	15	28	1.96
47761291--47761334	19	2.5	17	82	17	54	59	6	4	29	1.44
47761899--47761948	22	2.2	22	89	3	73	62	6	2	30	1.31
47762471--47762547	19	3.7	21	80	13	77	41	16	5	36	1.71
47762471--47762528	22	2.6	22	84	7	73	43	17	3	36	1.66
47762484--47762560	19	3.8	19	89	6	91	38	16	7	36	1.78
47769720--47769772	17	3.1	16	76	10	52	56	1	0	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47770871--47770900	15	2.0	15	93	0	51	43	0	0	56	0.99
47770880--47770917	20	1.9	20	88	0	58	55	0	0	44	0.99
47772456--47772591	63	2.1	64	83	4	168	18	47	6	27	1.73
47773999--47774062	27	2.4	27	84	5	78	39	28	15	17	1.90
47782960--47783024	22	3.0	22	81	0	85	32	16	15	35	1.91
47793304--47793344	21	2.0	20	85	4	55	26	4	14	53	1.61
47794353--47794451	32	3.0	32	91	4	144	39	17	26	17	1.91
47800195--47800387	32	5.8	32	91	3	260	17	24	17	40	1.90
47805566--47805609	20	2.1	22	84	16	58	13	9	9	68	1.40
47808349--47808377	13	2.1	14	93	6	51	65	20	0	13	1.26
47822907--47822962	20	2.7	21	81	13	53	69	7	12	10	1.36
47822918--47822962	21	2.1	23	88	12	69	68	8	8	13	1.38
47825748--47825846	32	3.0	31	79	8	108	21	23	15	40	1.90
47825760--47825856	35	2.9	33	77	7	99	19	20	16	43	1.88
47828654--47828698	20	2.1	23	88	12	69	13	8	8	68	1.38
47829790--47829832	13	3.5	13	81	18	65	30	23	9	37	1.86
47829800--47829845	10	4.3	10	84	15	65	36	19	8	34	1.83
47829790--47829846	23	2.5	23	97	2	107	35	21	8	35	1.84
47830022--47830073	20	2.8	18	76	21	54	51	7	1	38	1.42
47851868--47851928	26	2.4	26	86	2	79	44	11	6	37	1.67
47852084--47852138	25	2.2	25	84	12	69	49	5	0	45	1.25
47853485--47853605	60	2.0	60	83	3	154	32	22	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47854822--47854864	16	2.7	15	82	10	50	62	23	0	13	1.31
47856742--47856795	21	2.6	21	88	5	83	29	35	7	27	1.84
47858006--47858070	29	2.2	29	83	5	76	53	13	10	21	1.70
47858006--47858093	31	2.9	29	79	6	86	53	12	12	21	1.71
47859837--47859881	20	2.2	20	88	0	63	68	0	2	28	1.01
47859849--47859895	20	2.3	20	92	0	76	61	2	2	34	1.20
47859921--47859972	10	5.2	10	77	9	61	65	0	0	34	0.93
47859888--47859972	20	4.2	20	69	8	66	63	3	3	29	1.28
47860153--47860256	20	5.3	19	72	15	86	28	7	0	63	1.22
47861020--47861049	11	2.6	12	89	10	53	33	0	0	66	0.92
47864005--47864053	24	2.0	25	92	4	82	16	22	30	30	1.96
47869117--47869145	9	3.0	10	90	10	51	58	0	20	20	1.39
47869407--47869475	26	2.7	26	91	8	106	36	7	20	36	1.80
47871485--47871532	13	3.7	13	74	0	51	29	6	25	39	1.80
47876963--47877003	15	2.5	17	80	11	59	63	0	2	34	1.08
47882415--47882467	13	4.0	13	82	4	70	33	1	7	56	1.38
47882414--47882499	27	3.2	27	78	4	93	34	3	6	54	1.44
47882503--47882536	15	2.3	15	94	0	59	41	14	2	41	1.61
47882662--47882771	13	8.6	13	76	15	86	39	3	4	52	1.39
47882685--47882780	40	2.4	40	87	6	133	36	4	4	55	1.39
47882685--47882780	27	3.6	26	82	2	111	36	4	4	55	1.39
47882685--47882780	13	7.2	13	76	13	88	36	4	4	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47882816--47882849	15	2.3	15	94	0	59	41	14	2	41	1.61
47882963--47883092	13	9.9	13	77	12	88	39	4	3	52	1.40
47882415--47883150	316	2.3	313	97	1	1384	37	6	5	50	1.50
47883001--47883096	40	2.4	40	89	3	140	38	4	3	54	1.36
47883001--47883096	27	3.6	26	82	2	111	38	4	3	54	1.36
47882996--47883087	13	6.8	13	80	6	94	39	4	2	54	1.32
47886353--47886400	25	1.9	25	100	0	96	39	4	8	47	1.53
47886473--47886506	16	2.1	16	94	0	59	50	5	2	41	1.42
47886907--47886949	2	21.0	2	95	4	77	48	0	2	48	1.14
47891431--47891459	12	2.3	13	94	5	51	13	0	3	82	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207