genome.fa.s19.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  175  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53993064--53993105	21	2.0	21	85	0	57	45	11	4	38	1.62
53994995--53995022	6	4.7	6	100	0	56	14	0	14	71	1.15
53994983--53995034	18	2.8	18	72	13	52	23	1	9	65	1.32
53996213--53996347	9	14.4	9	69	13	51	28	2	2	65	1.19
53996230--53996254	11	2.3	11	100	0	50	24	0	0	76	0.80
53996213--53996271	29	2.1	28	90	3	91	25	1	3	69	1.13
53996221--53996262	20	2.1	20	86	0	57	23	2	4	69	1.20
53996258--53996322	20	3.4	19	73	10	60	36	3	1	58	1.23
53996222--53996290	27	2.5	30	77	15	76	30	1	4	63	1.22
53996266--53996331	20	3.3	20	77	8	64	34	3	3	59	1.28
54013515--54013813	131	2.3	131	94	3	520	42	16	7	34	1.76
54014101--54014343	132	1.8	131	84	2	335	38	16	9	35	1.81
54014676--54014724	16	2.8	17	81	15	55	46	4	4	44	1.41
54015015--54015076	24	2.6	24	81	0	79	54	1	6	37	1.36
54027728--54027958	114	2.0	114	96	0	426	29	16	24	30	1.96
54031926--54032009	41	2.1	41	84	8	111	39	0	0	60	0.97
54034632--54034676	19	2.4	19	92	0	72	37	35	6	20	1.79
54041724--54041773	3	16.7	3	100	0	100	34	32	0	34	1.58
54050685--54050746	26	2.4	26	83	5	72	41	8	11	38	1.70
54062600--54062663	32	2.1	30	82	11	76	43	20	6	29	1.76
54062673--54062697	11	2.3	11	100	0	50	76	0	0	24	0.80
54062672--54062813	20	6.7	20	69	21	76	65	2	1	30	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54062742--54062813	11	7.2	11	71	17	50	72	1	2	23	1.06
54063031--54063109	36	2.1	37	88	4	115	30	0	3	65	1.10
54063068--54063129	28	2.2	29	82	8	74	37	0	3	59	1.13
54066984--54067174	59	3.2	59	73	11	215	41	0	3	53	1.22
54067084--54067129	18	2.6	18	86	6	58	43	0	2	54	1.12
54066979--54067233	122	2.1	121	94	2	449	42	0	4	52	1.26
54067146--54067197	22	2.4	21	79	17	54	38	0	5	55	1.24
54067997--54068159	83	2.0	83	83	1	211	28	11	17	42	1.84
54072063--54072101	16	2.4	16	80	16	53	66	2	5	25	1.25
54072136--54072176	13	3.2	13	85	0	55	68	2	29	0	1.03
54072139--54072177	17	2.3	17	91	8	62	66	2	30	0	1.05
54073274--54073366	18	4.7	18	73	22	80	48	1	26	23	1.58
54073259--54073344	42	2.0	42	93	0	145	48	3	24	23	1.66
54077192--54077266	37	2.0	37	97	0	141	6	22	13	57	1.59
54081072--54081164	40	2.3	40	85	7	118	36	21	23	18	1.95
54081244--54081455	41	5.2	41	86	2	275	19	17	29	33	1.95
54082525--54082603	14	5.6	14	80	8	90	17	0	46	35	1.49
54082515--54082554	21	1.9	21	89	0	62	15	0	42	42	1.46
54082546--54082647	7	14.6	7	80	4	80	18	0	44	37	1.50
54082618--54082642	13	1.9	13	100	0	50	20	0	56	24	1.43
54083063--54083106	21	2.1	21	82	0	52	45	22	0	31	1.53
54086701--54086731	15	2.1	15	93	0	53	48	0	32	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54086972--54087321	43	8.3	43	79	7	373	22	18	30	28	1.97
54087116--54087185	34	2.1	34	89	5	106	24	22	32	20	1.97
54087074--54087314	77	3.0	77	80	14	281	22	19	31	26	1.98
54087028--54087270	120	2.0	120	85	4	330	22	19	31	26	1.97
54086998--54087314	163	1.9	163	84	3	424	22	19	31	27	1.98
54095590--54095626	17	2.2	17	100	0	74	62	0	0	37	0.96
54096297--54096329	16	2.0	17	88	5	50	36	12	3	48	1.56
54109413--54109458	24	1.9	24	86	8	67	47	4	6	41	1.49
54109424--54109475	24	2.2	24	82	6	61	48	5	3	42	1.45
54110498--54110539	20	2.0	21	90	9	68	26	7	33	33	1.83
54111771--54111828	3	19.0	3	77	10	55	36	3	0	60	1.14
54111804--54111828	13	1.9	13	100	0	50	32	0	0	68	0.90
54111801--54111837	19	1.9	19	89	10	58	27	0	2	70	1.01
54112831--54113245	108	3.9	108	93	0	717	32	15	18	33	1.92
54114004--54114078	36	2.1	35	80	14	82	57	1	4	37	1.26
54114535--54114571	9	4.1	9	92	0	65	29	10	13	45	1.77
54119149--54119310	9	17.7	9	65	18	59	64	3	2	30	1.22
54119287--54119320	18	1.9	17	88	5	50	67	8	2	20	1.31
54122811--54122865	7	7.7	7	86	10	67	32	0	0	67	0.91
54122790--54122864	20	3.8	20	76	10	75	34	0	0	65	0.93
54125090--54125140	18	2.9	18	82	14	70	41	0	0	58	0.98
54125092--54125140	9	5.6	9	75	22	50	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54125573--54125616	22	2.0	22	95	0	79	13	20	27	38	1.90
54125672--54125813	42	3.4	42	85	5	180	35	21	19	22	1.96
54126152--54126201	21	2.4	20	80	9	55	8	46	16	30	1.75
54131564--54131601	19	2.1	19	95	5	69	47	5	15	31	1.68
54132271--54132509	9	27.4	9	67	16	103	33	2	17	46	1.61
54132324--54132388	25	2.8	25	77	15	77	36	0	18	44	1.50
54132305--54132441	41	3.2	42	75	11	125	35	1	17	45	1.57
54132536--54132697	29	5.8	29	71	16	126	33	8	4	53	1.50
54132583--54132626	14	3.1	15	81	18	58	38	2	6	52	1.41
54132513--54132683	84	2.0	84	97	0	324	34	7	4	53	1.50
54134244--54134297	21	2.5	22	75	19	60	46	27	3	22	1.69
54134265--54134326	14	4.4	14	77	4	61	46	25	8	19	1.77
54134316--54134360	22	2.0	22	83	8	56	48	44	2	4	1.35
54134436--54134477	15	2.9	15	80	16	52	47	28	7	16	1.73
54134437--54134478	22	2.0	21	90	4	66	50	28	4	16	1.66
54135006--54135504	72	6.9	71	79	5	446	26	21	18	33	1.96
54135006--54135504	145	3.4	143	78	4	500	26	21	18	33	1.96
54135569--54135660	40	2.3	40	77	11	98	18	22	19	39	1.93
54135600--54135694	40	2.4	40	84	7	113	17	21	21	40	1.92
54141232--54141351	40	3.0	40	77	2	116	35	7	5	52	1.51
54141323--54141394	28	2.8	24	75	15	72	34	5	2	56	1.37
54141510--54141538	13	2.3	13	94	5	51	17	0	13	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54143383--54143429	23	2.0	23	88	8	69	51	14	10	23	1.74
54145639--54145699	13	4.6	13	80	12	63	59	1	3	36	1.24
54145639--54145699	3	19.7	3	81	6	68	59	1	3	36	1.24
54145663--54145699	16	2.3	16	90	9	58	64	0	0	35	0.94
54146211--54146239	2	14.5	2	100	0	58	51	0	48	0	1.00
54146468--54146499	16	1.9	17	93	6	57	0	15	3	81	0.82
54155366--54155396	3	10.0	3	93	6	53	35	0	0	64	0.94
54162251--54162287	3	12.3	3	100	0	74	64	0	0	35	0.94
54163904--54163948	21	2.1	21	87	0	63	68	8	17	4	1.32
54164128--54164173	23	2.0	23	83	8	58	21	10	2	65	1.35
54167485--54167530	23	2.0	22	84	12	58	47	0	2	50	1.13
54177140--54177213	25	2.8	26	79	8	69	35	14	10	39	1.82
54181471--54181497	3	9.0	3	100	0	54	66	0	0	33	0.92
54186900--54186935	17	2.1	17	89	0	54	50	0	5	44	1.25
54191466--54191752	50	5.6	50	79	3	236	22	27	21	28	1.99
54191528--54191800	100	2.7	106	81	5	294	22	28	21	27	1.99
54191726--54191846	48	2.5	48	93	0	206	24	30	18	26	1.98
54192537--54192609	22	3.6	22	66	21	68	36	19	13	30	1.90
54192538--54192630	38	2.4	38	98	0	177	37	19	13	29	1.90
54195920--54195978	29	2.0	29	83	0	73	38	11	8	40	1.72
54196828--54196893	29	2.3	29	82	5	82	43	4	4	46	1.44
54199953--54200057	52	2.0	52	81	7	124	44	16	9	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54219585--54219633	22	2.2	23	88	3	73	36	10	0	53	1.35
54219908--54219937	12	2.5	12	94	0	51	53	10	0	36	1.35
54220247--54220292	22	2.1	22	91	0	74	41	15	13	30	1.85
54220247--54220457	95	2.2	93	91	2	332	40	14	11	33	1.82
54220247--54220457	47	4.5	47	91	3	318	40	14	11	33	1.82
54220709--54220740	14	2.2	15	94	5	57	53	25	0	21	1.46
54221426--54221508	43	1.9	43	83	9	107	33	30	19	16	1.94
54222433--54222463	12	2.6	12	89	0	53	54	3	0	41	1.16
54223499--54223528	15	1.9	16	93	6	53	26	10	16	46	1.78
54225184--54225218	13	2.6	13	90	4	52	34	5	0	60	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207