genome.fa.s19.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  132  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40340520--40340553	17	1.9	18	88	5	52	50	0	0	50	1.00
40340767--40340850	21	4.1	21	86	6	109	20	1	34	44	1.59
40340769--40340859	14	6.6	14	71	12	64	19	2	35	42	1.64
40340777--40340849	7	10.7	7	71	11	53	17	1	35	45	1.58
40341336--40341421	24	3.8	22	81	14	95	58	0	1	40	1.06
40341358--40341438	22	3.6	22	71	15	67	56	0	3	39	1.17
40341336--40341443	45	2.3	47	79	7	123	58	0	2	37	1.19
40344666--40344809	72	2.0	72	93	0	243	36	10	16	36	1.83
40347906--40347963	28	2.1	28	96	0	107	34	17	15	32	1.91
40351178--40351219	22	1.9	22	85	0	57	54	4	23	16	1.61
40352556--40352627	27	2.7	26	89	8	110	43	8	1	47	1.42
40352682--40352748	27	2.5	26	88	11	100	20	26	31	20	1.98
40352883--40352921	19	2.0	21	85	10	55	23	0	10	66	1.22
40355260--40355429	5	32.8	5	67	18	55	0	29	0	70	0.87
40355267--40355377	24	4.5	25	72	15	79	0	30	0	69	0.89
40355271--40355334	23	2.7	25	79	18	75	0	34	0	65	0.93
40355318--40355456	4	34.0	4	75	18	94	0	29	0	70	0.88
40355289--40355447	18	8.8	18	69	20	84	0	30	0	69	0.88
40355296--40355455	82	2.0	75	83	10	196	0	30	0	70	0.88
40355314--40355430	48	2.4	50	83	7	152	0	29	0	70	0.87
40355318--40355457	23	5.8	24	73	19	82	0	30	0	70	0.88
40355371--40355467	23	4.2	24	71	17	62	0	35	0	64	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40355412--40355467	26	2.2	25	81	12	71	0	39	0	60	0.97
40355604--40355675	28	2.6	28	95	2	128	51	0	6	41	1.29
40365347--40365462	58	2.0	58	91	0	187	18	15	21	44	1.86
40370693--40370843	41	3.7	41	82	3	169	25	27	17	29	1.97
40371179--40371393	77	2.8	75	78	4	225	41	17	3	37	1.68
40371179--40371433	76	3.4	74	76	9	221	41	17	4	36	1.69
40373982--40374085	51	2.0	51	94	0	181	25	15	23	36	1.93
40380376--40380536	83	1.9	83	82	7	191	44	13	9	33	1.75
40381181--40381411	87	2.6	88	81	6	247	32	8	17	41	1.79
40399299--40399329	7	4.4	7	100	0	62	45	0	25	29	1.54
40405819--40405961	25	5.8	24	71	11	101	21	26	18	33	1.96
40408699--40408819	54	2.2	54	95	0	215	33	11	10	44	1.75
40408983--40409023	2	20.5	2	94	0	73	48	0	48	2	1.14
40415640--40415702	20	3.2	20	71	8	65	33	19	28	19	1.96
40419927--40420005	37	2.1	37	88	0	113	25	32	18	22	1.97
40420126--40420459	147	2.3	142	91	4	528	28	30	9	31	1.89
40420124--40420462	47	7.1	47	92	2	516	28	30	9	31	1.88
40427612--40427747	20	6.8	19	70	5	65	36	20	29	13	1.91
40427602--40427760	40	4.0	40	86	0	219	37	19	28	14	1.91
40436560--40436668	40	2.8	40	85	1	148	15	19	23	41	1.90
40437367--40437576	103	2.0	103	98	0	402	37	4	19	39	1.73
40439318--40439428	40	2.8	39	82	5	116	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40443580--40443640	25	2.4	25	97	0	113	40	13	19	26	1.88
40463424--40463501	34	2.3	34	88	0	111	34	11	10	43	1.75
40463676--40463756	23	3.6	23	86	1	110	33	19	25	20	1.97
40463718--40463782	23	2.8	23	83	4	78	40	16	21	21	1.92
40466445--40466470	12	2.2	12	100	0	52	23	30	7	38	1.83
40473229--40473311	27	3.0	28	77	6	82	32	20	20	26	1.97
40473412--40473466	26	2.1	26	89	0	83	38	21	16	23	1.93
40473647--40473734	27	3.3	27	85	3	79	22	11	21	44	1.84
40473661--40473736	27	2.8	26	90	4	107	19	13	19	47	1.82
40480968--40481080	27	4.2	27	85	4	79	21	13	23	42	1.87
40480980--40481084	27	3.9	27	91	0	156	19	13	22	44	1.85
40492494--40492564	7	10.4	7	77	17	51	36	0	49	14	1.43
40492522--40492551	14	2.1	14	100	0	60	30	0	56	13	1.37
40499447--40499491	23	2.0	23	86	4	65	42	2	13	42	1.56
40500293--40500356	27	2.3	27	89	2	92	28	20	15	35	1.93
40502784--40502918	61	2.2	61	89	0	198	31	17	25	25	1.97
40502811--40502915	32	3.4	31	70	17	92	29	17	26	26	1.97
40502808--40502946	61	2.3	61	83	2	163	31	17	27	23	1.97
40523400--40523478	26	2.9	27	80	12	99	21	13	5	59	1.54
40524318--40524374	17	3.4	17	72	18	64	17	5	12	64	1.44
40524306--40524374	34	2.0	34	100	0	138	17	5	11	65	1.44
40525320--40525357	3	12.7	3	100	0	76	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40525321--40525382	9	7.1	8	81	7	52	27	1	3	67	1.15
40529890--40529940	23	2.2	23	89	0	75	27	11	21	39	1.88
40536994--40537040	23	2.0	23	83	0	58	38	12	17	31	1.87
40540099--40540397	98	3.1	98	90	0	447	30	20	19	30	1.97
40540218--40540379	54	3.2	53	67	16	153	32	16	20	30	1.95
40540290--40540807	143	3.6	143	87	0	685	30	19	22	28	1.98
40540001--40540693	241	2.9	237	71	12	620	29	19	21	29	1.98
40543563--40543887	86	3.8	86	82	4	352	32	20	17	29	1.96
40545269--40545329	22	2.5	26	82	17	78	34	14	26	24	1.94
40547118--40547167	25	2.0	26	96	4	93	54	8	8	30	1.58
40557645--40557749	54	1.9	54	84	3	140	32	22	21	22	1.98
40559496--40559562	30	2.3	29	82	10	82	58	10	7	23	1.57
40561758--40561785	2	14.0	2	100	0	56	50	0	0	50	1.00
40564364--40564457	30	3.1	30	90	0	152	24	32	15	26	1.96
40564432--40564519	42	2.1	42	87	4	124	19	28	26	26	1.99
40567164--40567234	37	1.9	37	85	0	97	28	16	38	16	1.91
40568977--40569019	18	2.4	18	88	0	59	41	44	2	11	1.53
40569144--40569193	9	5.6	9	95	0	91	24	10	28	38	1.87
40569135--40569193	18	3.3	18	95	0	100	23	8	27	40	1.83
40569127--40569194	27	2.5	27	87	0	100	23	7	26	42	1.80
40569749--40569835	21	3.9	22	72	15	72	49	4	1	44	1.30
40569935--40569982	24	2.0	24	83	0	60	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40569971--40570019	25	1.9	26	83	4	64	44	4	0	51	1.20
40575899--40575940	19	2.3	18	84	12	50	78	2	14	4	1.01
40589655--40589976	44	7.3	44	65	9	172	30	21	24	23	1.99
40589649--40590044	132	3.0	132	94	0	684	29	21	25	23	1.99
40593890--40593962	25	2.9	25	91	0	92	21	24	23	30	1.99
40594128--40594187	31	1.9	31	83	6	77	40	1	18	40	1.60
40596584--40596729	40	3.7	40	82	10	140	23	23	27	26	2.00
40604572--40604756	40	4.6	39	84	5	212	23	22	28	25	2.00
40604572--40604754	79	2.3	81	84	7	232	24	22	27	25	2.00
40604625--40604789	79	2.1	79	83	6	201	25	20	27	26	1.99
40614033--40614084	5	10.2	5	82	12	61	23	25	15	36	1.93
40618740--40618783	15	2.9	15	77	12	54	79	0	4	15	0.89
40619498--40620019	44	11.2	44	64	23	126	27	19	19	33	1.96
40619459--40620118	141	4.7	142	95	0	1171	27	20	19	33	1.96
40619943--40620035	44	2.1	44	84	2	116	25	21	21	31	1.98
40637941--40637980	20	2.0	20	100	0	80	30	25	15	30	1.95
40644957--40645334	50	7.6	50	68	3	258	31	20	24	24	1.98
40644955--40645467	100	5.1	100	92	0	760	31	20	23	24	1.98
40645010--40645442	50	8.7	49	68	8	228	30	20	24	24	1.99
40646749--40646823	26	2.9	27	76	11	75	32	12	1	54	1.45
40660519--40660688	85	2.0	85	96	0	313	42	9	14	33	1.77
40666246--40666285	16	2.5	16	83	0	53	52	12	20	15	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40667618--40667671	25	2.2	25	82	0	63	33	9	14	42	1.78
40671019--40671062	23	1.9	22	82	17	54	36	25	0	38	1.56
40671107--40671195	45	2.0	45	95	0	160	34	24	15	24	1.95
40671202--40671342	51	2.8	51	81	4	176	32	27	17	22	1.96
40674823--40674903	39	2.1	39	95	0	144	39	12	17	30	1.86
40676999--40677146	41	3.6	41	89	0	208	23	20	24	31	1.98
40676999--40677165	82	2.1	80	84	4	210	25	20	23	31	1.98
40682227--40682271	22	2.0	22	83	8	56	26	6	31	35	1.82
40683462--40683649	41	4.6	41	83	2	236	27	19	23	29	1.98
40683474--40683649	81	2.2	81	84	2	237	27	19	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207