genome.fa.s19.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  108  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32469545--32469766	117	1.9	117	88	1	338	43	18	7	30	1.77
32470731--32470834	40	2.6	40	87	4	149	35	25	23	16	1.95
32470889--32471084	41	4.8	41	93	0	302	21	21	30	27	1.98
32471722--32471780	21	2.8	21	81	2	64	28	0	37	33	1.58
32472249--32472273	4	6.2	4	100	0	50	76	0	0	24	0.80
32477013--32477070	27	2.2	26	81	3	62	27	5	1	65	1.23
32477257--32477588	43	7.7	43	86	0	423	24	18	32	24	1.97
32481202--32481281	39	2.1	39	95	0	142	43	18	6	31	1.75
32481386--32481436	23	2.3	22	83	10	59	68	7	1	21	1.25
32481490--32481564	38	1.9	39	81	7	91	36	5	14	44	1.68
32481808--32481847	18	2.2	18	91	8	64	27	0	7	65	1.20
32493610--32493653	22	2.0	23	90	4	72	47	9	9	34	1.67
32493731--32493772	12	3.5	12	93	0	75	40	16	9	33	1.81
32499877--32499936	31	1.9	31	90	6	95	31	15	25	28	1.95
32504186--32504482	150	2.0	150	96	0	549	43	11	11	32	1.77
32508573--32508607	15	2.3	15	95	0	61	20	14	5	60	1.54
32509067--32509134	6	11.7	6	84	6	68	72	8	5	13	1.28
32509045--32509135	40	2.3	40	86	0	119	74	7	7	9	1.21
32509060--32509128	34	2.0	34	91	0	111	73	8	5	11	1.23
32509066--32509122	28	2.0	28	86	0	78	73	10	3	12	1.21
32510883--32511018	42	3.2	42	65	15	107	27	21	25	26	1.99
32510740--32511628	87	10.3	87	91	1	1403	29	22	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32510740--32511628	173	5.1	173	90	1	1385	29	22	23	24	1.99
32510740--32511628	260	3.4	260	93	0	1498	29	22	23	24	1.99
32515639--32515675	19	1.9	19	88	0	56	67	5	0	27	1.12
32528473--32528522	20	2.5	20	75	15	59	12	20	8	60	1.57
32528725--32528870	50	2.9	50	86	2	204	23	30	21	24	1.99
32528780--32528978	56	3.7	56	85	4	257	25	28	18	27	1.98
32531975--32532014	21	1.9	21	90	10	64	55	7	12	25	1.63
32538480--32538649	50	3.4	50	81	3	200	21	28	23	27	1.99
32541916--32543091	583	2.0	585	96	0	2158	31	21	15	31	1.95
32547181--32547241	30	2.0	30	100	0	122	34	13	22	29	1.92
32552951--32553092	26	5.6	25	68	15	85	59	4	7	29	1.43
32553004--32553052	22	2.3	22	85	3	64	63	2	4	30	1.24
32553221--32553288	25	2.7	26	79	9	68	60	2	4	32	1.32
32553247--32553312	21	3.0	22	84	13	82	63	0	1	34	1.04
32553275--32553327	25	2.1	25	86	6	72	67	1	1	28	1.11
32553813--32553880	24	2.7	25	77	8	59	11	7	23	57	1.59
32554178--32554264	43	2.0	43	93	0	147	27	21	19	31	1.98
32554490--32554902	44	9.3	43	66	17	186	22	25	24	27	2.00
32554454--32554967	89	5.8	89	88	1	710	23	25	23	27	2.00
32566564--32566689	26	4.9	25	71	16	71	58	6	7	26	1.50
32566568--32566618	24	2.2	23	82	3	57	54	5	11	27	1.59
32566666--32566714	21	2.3	21	82	10	55	61	4	6	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32566890--32566957	25	2.7	26	81	9	77	61	2	4	30	1.30
32566842--32566957	53	2.2	53	79	8	132	59	2	5	32	1.33
32566911--32566979	25	3.1	21	84	12	77	66	1	2	28	1.14
32566916--32566987	21	3.2	21	76	21	67	66	0	2	30	1.06
32570335--32570403	29	2.3	29	75	7	68	23	14	20	42	1.89
32581104--32581144	21	2.0	20	85	4	55	48	9	2	39	1.49
32581977--32582053	29	2.5	31	87	4	104	28	12	11	46	1.77
32582208--32582267	27	2.2	26	80	13	68	5	30	1	63	1.25
32590763--32590821	24	2.5	24	86	5	75	16	25	25	32	1.97
32596222--32596348	54	2.4	54	80	6	141	26	26	29	17	1.97
32599637--32599684	25	1.9	25	91	0	78	16	27	18	37	1.92
32599629--32599694	25	2.6	25	77	13	73	22	25	19	31	1.98
32601530--32601555	2	13.0	2	100	0	52	50	50	0	0	1.00
32607807--32607867	30	2.1	30	96	3	115	6	3	18	72	1.21
32612073--32612131	28	2.1	29	87	9	86	50	0	0	49	1.00
32612750--32612794	22	2.0	22	86	0	63	31	2	0	66	1.04
32612955--32613127	87	2.0	82	89	5	256	40	6	13	38	1.72
32613647--32614216	285	2.0	285	99	0	1122	23	32	17	27	1.96
32618661--32618797	30	4.6	30	73	8	91	35	24	21	18	1.95
32620583--32620617	17	2.1	17	88	0	52	74	0	8	17	1.06
32621223--32621265	18	2.5	17	76	3	50	32	0	4	62	1.15
32626019--32626061	21	2.0	21	100	0	86	51	18	9	20	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32629226--32629292	23	2.9	23	95	0	116	29	29	4	35	1.77
32629617--32629667	21	2.4	21	90	6	77	74	5	3	15	1.16
32629617--32629667	22	2.4	21	90	3	75	74	5	3	15	1.16
32629655--32629716	25	2.6	22	72	16	52	70	1	8	19	1.20
32631790--32631833	20	2.2	21	88	8	65	77	2	13	6	1.07
32636026--32636092	23	2.9	23	95	0	116	29	29	4	35	1.77
32636690--32636719	15	2.0	15	93	0	51	30	20	36	13	1.90
32647293--32647326	16	2.1	16	88	5	50	8	0	14	76	1.01
32665655--32665753	49	2.0	49	98	0	189	29	18	12	40	1.86
32668400--32668510	47	2.4	47	81	3	134	38	23	11	26	1.89
32686257--32686324	28	2.4	28	80	9	84	20	23	30	25	1.98
32686675--32686853	27	6.6	27	79	6	141	18	17	20	44	1.87
32686675--32686853	54	3.3	54	82	6	177	18	17	20	44	1.87
32686685--32686853	81	2.1	81	83	4	207	17	17	19	44	1.86
32687512--32687542	15	2.1	14	94	5	53	61	0	38	0	0.96
32693919--32694009	27	3.4	27	87	0	128	17	18	21	41	1.90
32697012--32697075	32	2.0	32	100	0	128	40	3	21	34	1.69
32698500--32698525	13	2.0	13	100	0	52	61	0	15	23	1.33
32701864--32701930	25	2.7	25	85	0	89	34	17	20	26	1.96
32704850--32705087	50	4.7	50	82	5	239	22	26	21	29	1.99
32704850--32705087	100	2.3	103	81	7	263	22	26	21	29	1.99
32706370--32706446	39	2.0	39	100	0	154	31	16	12	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32707795--32707837	13	3.3	13	83	0	59	32	20	6	39	1.80
32721570--32721652	30	2.8	30	90	0	130	27	27	10	33	1.90
32724089--32724149	28	2.1	28	82	14	72	36	3	8	52	1.48
32724447--32724472	6	4.3	6	100	0	52	15	50	0	34	1.45
32732079--32732148	35	2.0	36	88	2	106	40	14	22	22	1.90
32733978--32734089	33	3.3	33	67	18	86	25	25	16	32	1.97
32733929--32734091	69	2.4	69	89	4	249	25	26	17	30	1.97
32750858--32750891	17	2.1	16	88	5	50	76	14	0	8	1.01
32758901--32758975	6	12.8	6	77	5	66	21	1	2	74	1.01
32758941--32758988	25	1.9	25	83	8	62	29	2	2	66	1.14
32761874--32761996	41	3.0	41	86	1	176	34	17	27	19	1.95
32764568--32764760	51	3.8	49	81	6	190	31	25	16	26	1.96
32774638--32774692	16	3.4	16	78	9	58	43	5	21	29	1.75
32778816--32779227	23	18.0	23	74	10	317	39	23	4	33	1.74
32778816--32779227	46	9.0	46	78	7	353	39	23	4	33	1.74
32778816--32779224	114	3.6	114	77	10	370	39	22	4	33	1.74
32778805--32779227	160	2.6	158	82	6	503	39	23	4	33	1.75
32787007--32787048	22	1.9	22	95	0	75	50	2	0	47	1.14
32788483--32788546	29	2.2	28	81	15	69	53	1	15	29	1.52
32790738--32790777	17	2.2	19	91	8	66	42	0	2	55	1.13
32790737--32790783	24	2.0	24	83	8	60	44	0	4	51	1.21
32792599--32792792	102	1.9	102	80	9	225	36	10	17	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32802795--32802832	19	2.0	19	94	0	67	34	10	23	31	1.89
32809459--32809485	4	6.8	4	100	0	54	48	0	0	51	1.00
32810238--32811083	279	2.9	284	87	7	1187	35	18	6	39	1.77
32813330--32813516	51	3.7	51	75	5	164	23	17	27	32	1.96
32816367--32816430	29	2.2	29	91	2	101	40	18	20	20	1.91
32819083--32819121	20	2.0	20	89	0	60	33	2	35	28	1.71
32819189--32819223	17	2.1	17	100	0	70	28	17	17	37	1.92
32820688--32820934	50	4.8	50	83	4	298	27	22	29	21	1.99
32820688--32821151	100	4.4	103	77	12	460	27	22	28	21	1.99
32820840--32821051	117	1.8	117	85	0	298	27	22	28	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207