genome.fa.s19.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  133  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40688438--40688479	21	2.0	21	90	0	66	38	4	9	47	1.57
40690044--40690089	23	2.0	22	84	16	58	45	2	26	26	1.65
40691243--40691371	23	5.8	23	82	8	142	18	20	22	38	1.93
40691245--40691376	45	3.0	45	83	6	162	20	18	21	38	1.93
40691243--40691375	68	2.0	66	83	5	169	19	19	21	39	1.93
40694899--40694944	23	2.0	22	84	16	58	45	2	26	26	1.65
40694906--40694954	23	2.0	25	84	7	66	46	4	24	24	1.69
40700740--40700797	18	3.1	18	79	15	64	58	0	1	39	1.08
40700751--40700793	10	4.3	10	82	8	52	65	0	2	32	1.06
40700903--40700946	11	4.2	11	85	5	56	34	0	4	61	1.16
40731446--40731480	17	2.1	17	88	0	52	71	2	8	17	1.23
40733821--40733861	12	3.4	12	87	9	57	56	0	7	36	1.27
40735340--40736759	132	10.8	132	87	6	1787	28	24	18	28	1.98
40735846--40736290	44	10.1	44	64	9	145	28	24	18	28	1.98
40735340--40736759	393	3.6	392	87	4	1860	28	24	18	28	1.98
40741713--40741743	16	1.9	16	93	0	53	32	22	19	25	1.97
40743698--40743739	12	3.5	12	84	12	59	54	0	9	35	1.33
40745940--40745964	3	8.3	3	100	0	50	68	0	0	32	0.90
40749953--40750168	96	2.3	95	82	8	214	34	11	6	48	1.64
40749998--40750190	96	2.0	96	97	0	368	29	13	7	49	1.68
40750637--40750686	19	2.6	19	78	9	57	24	2	8	66	1.29
40750791--40750833	21	2.0	21	90	0	68	11	18	27	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40750914--40751051	43	3.3	42	79	7	136	31	28	18	21	1.97
40752570--40753015	194	2.3	194	82	2	511	39	17	13	29	1.88
40756558--40756624	7	8.6	7	76	20	62	29	49	1	19	1.57
40756562--40756625	16	3.9	16	89	2	101	29	50	1	18	1.57
40756871--40757665	113	7.0	113	88	3	1114	27	26	21	24	1.99
40758181--40758264	45	1.9	43	85	9	116	69	5	0	25	1.11
40759606--40759955	123	2.8	124	92	0	585	30	15	22	32	1.95
40763066--40763090	10	2.5	10	100	0	50	48	0	8	44	1.32
40763074--40763254	55	3.3	55	96	0	344	44	4	12	37	1.64
40763249--40764054	29	27.3	29	82	10	951	27	1	27	44	1.62
40763249--40764054	59	13.6	58	83	10	960	27	1	27	44	1.62
40763249--40764054	88	9.1	88	84	9	1018	27	1	27	44	1.62
40763568--40763620	23	2.3	21	100	0	70	28	0	26	45	1.54
40763580--40763629	23	2.2	23	88	0	73	32	2	24	42	1.66
40764060--40764244	71	2.6	71	92	0	307	44	12	3	38	1.59
40764646--40764680	18	1.9	18	88	0	52	31	8	34	25	1.86
40765332--40765356	7	3.6	7	100	0	50	60	12	0	28	1.32
40770221--40770408	45	4.2	44	79	11	186	20	16	14	48	1.80
40772670--40772732	21	3.2	20	76	12	60	55	1	6	36	1.35
40774103--40774268	28	6.0	28	79	7	164	23	13	5	57	1.56
40774105--40774268	56	3.0	55	80	7	183	23	12	5	58	1.55
40774550--40774623	34	2.2	33	79	13	80	27	16	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40788136--40788509	90	4.1	90	92	1	597	30	21	24	22	1.99
40788207--40788453	43	5.6	43	69	11	165	27	23	25	23	2.00
40797739--40797828	39	2.3	39	86	0	126	26	46	7	18	1.76
40804695--40804919	40	5.7	40	86	5	287	24	21	27	26	2.00
40804734--40804952	80	2.8	80	84	6	243	26	21	27	25	1.99
40812140--40812322	40	4.6	39	82	7	194	24	22	27	25	2.00
40812140--40812320	78	2.3	80	83	7	219	24	23	27	24	2.00
40827073--40827187	41	2.7	42	80	10	126	33	24	15	26	1.95
40827059--40827196	43	3.3	42	74	13	131	33	27	15	23	1.95
40832550--40832654	23	4.4	24	81	12	119	35	16	22	25	1.95
40832551--40832659	47	2.3	49	84	7	143	33	18	21	26	1.96
40842606--40842716	43	2.6	41	73	9	98	28	18	24	27	1.98
40848814--40848952	40	3.5	40	96	3	244	20	23	30	25	1.98
40850538--40850566	15	1.9	15	100	0	58	41	0	0	58	0.98
40851821--40851859	21	1.9	21	89	5	62	28	20	28	23	1.99
40852121--40852251	65	2.0	65	95	0	235	26	13	16	42	1.86
40856113--40856200	45	2.0	45	95	0	158	38	26	12	22	1.90
40856129--40856204	21	3.5	21	70	16	64	38	26	13	22	1.91
40866100--40866212	27	4.3	26	80	5	102	19	22	20	38	1.94
40866100--40866212	26	4.3	26	79	9	104	19	22	20	38	1.94
40871375--40871545	46	3.7	46	73	13	170	29	27	20	22	1.98
40871379--40871549	93	1.8	93	89	0	270	29	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40877604--40877828	40	5.7	40	85	5	278	25	21	26	26	2.00
40877611--40877861	79	3.2	79	81	8	217	27	20	26	25	1.99
40882236--40882267	6	5.3	6	96	0	55	3	28	0	68	1.04
40886875--40886956	41	2.0	41	100	0	164	19	21	17	41	1.90
40887579--40887698	56	2.1	56	98	0	231	45	9	23	22	1.81
40888827--40889051	40	5.7	40	86	5	287	24	21	27	26	1.99
40888827--40889084	119	2.2	119	81	6	283	25	21	26	26	1.99
40893232--40893275	18	2.4	18	82	10	54	43	13	4	38	1.65
40899941--40900005	20	3.3	20	68	12	53	40	20	30	9	1.83
40899979--40900045	20	3.3	20	73	8	64	44	14	26	13	1.83
40904093--40904139	22	2.1	22	100	0	94	29	17	4	48	1.65
40910993--40911047	28	2.0	27	82	6	67	54	1	1	41	1.21
40912526--40912555	13	2.3	13	94	0	51	30	6	6	56	1.51
40913171--40913349	85	2.1	85	97	0	340	37	8	27	26	1.85
40914615--40915214	47	12.6	47	93	3	907	33	8	28	28	1.87
40914615--40915214	96	6.3	94	91	3	907	33	8	28	28	1.87
40922779--40922812	16	2.2	15	89	5	50	41	0	2	55	1.15
40927457--40927505	24	2.0	24	100	0	98	42	8	16	32	1.77
40929241--40929788	47	11.5	47	92	2	871	33	8	29	29	1.86
40929241--40929788	96	5.8	94	92	2	880	33	8	29	29	1.86
40929241--40929788	143	3.8	143	96	0	976	33	8	29	29	1.86
40934886--40935042	41	3.8	40	82	4	170	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40934882--40935035	82	1.9	82	83	2	202	24	17	29	29	1.97
40935425--40935458	14	2.3	15	85	5	52	35	0	29	35	1.58
40935606--40935649	13	3.4	12	82	14	52	20	0	38	40	1.53
40935593--40935646	7	7.9	7	80	12	58	18	0	42	38	1.50
40935599--40935642	20	2.2	20	88	8	63	18	0	43	38	1.50
40935540--40935703	90	1.8	90	85	5	235	27	0	27	44	1.59
40940407--40940550	43	3.4	43	84	6	179	22	15	25	36	1.94
40943460--40943493	17	2.0	17	88	0	50	55	5	17	20	1.62
40955598--40956900	659	2.0	658	93	0	2232	26	24	15	34	1.95
40979046--40979146	49	2.1	49	88	0	148	45	10	7	35	1.69
40986255--40986624	187	2.0	186	90	0	587	42	12	17	26	1.86
40988063--40988108	18	2.5	19	75	10	51	45	4	2	47	1.34
40989462--40989544	28	2.9	29	78	3	98	37	20	15	26	1.93
40991576--40991627	9	5.8	9	90	0	77	25	9	26	38	1.86
40991576--40991627	27	1.9	27	92	0	86	25	9	26	38	1.86
41009796--41009825	13	2.3	13	94	0	51	36	26	26	10	1.88
41012830--41013006	27	6.6	27	80	7	80	28	24	14	32	1.94
41012877--41013008	27	4.9	27	86	3	194	29	25	12	33	1.92
41015398--41015445	24	2.0	24	100	0	96	37	25	16	20	1.93
41017714--41017941	27	8.4	27	81	8	250	31	21	9	37	1.86
41017708--41017941	81	2.9	82	83	6	282	32	21	9	36	1.86
41036141--41036508	47	7.7	47	93	1	576	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41037892--41038234	40	8.6	40	89	0	515	25	21	26	25	2.00
41042280--41042736	47	9.7	47	92	3	728	32	8	29	28	1.87
41042310--41042678	183	2.0	185	97	2	697	33	8	28	29	1.87
41045217--41045293	22	3.5	22	80	18	81	23	27	2	46	1.65
41045243--41045293	11	4.6	11	83	7	68	21	31	1	45	1.63
41045742--41045767	7	3.7	7	100	0	52	26	0	15	57	1.38
41046417--41046459	18	2.4	18	88	0	59	18	27	9	44	1.80
41048606--41049029	126	3.4	126	91	0	668	26	21	19	32	1.97
41049066--41049301	94	2.4	100	84	7	295	39	17	2	41	1.61
41049155--41049299	51	3.1	46	71	14	134	36	16	2	44	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207